mRNA_H-paniculata_contig188.4675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig188.4675.1
Unique NamemRNA_H-paniculata_contig188.4675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 7.010e-106
Identity = 161/169 (95.27%), Postives = 164/169 (97.04%), Query Frame = 1 
Query:    1 GLQLPDFEESDFYVEQEQVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMARE 507
            GLQLPDFEESDFYVEQEQV IGPAVGEGAFSTV+IGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAK+RGQLHAV IITEYAQGGDLLKLLLR +TPLGWRFRIQIAKEG EALEYLHSQQLIHRDIKSSNFLLD DWHCKLSDFGMARE
Sbjct:    6 GLQLPDFEESDFYVEQEQVTIGPAVGEGAFSTVYIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKSRGQLHAVYIITEYAQGGDLLKLLLRTETPLGWRFRIQIAKEGAEALEYLHSQQLIHRDIKSSNFLLDGDWHCKLSDFGMARE 174
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A835YUS4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUS4_9STRA)

HSP 1 Score: 287 bits (735), Expect = 1.320e-88
Identity = 137/169 (81.07%), Postives = 154/169 (91.12%), Query Frame = 1 
Query:    1 GLQLPDFEESDFYVEQEQVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMARE 507
            G +LPDF +SDFYV  + V +GP++GEGAFSTV+ G+YFGD VAVKKQTR+G+DLEKYLLREL VLK+IRH NMLEYIGAYNVIAK+RGQLHAV IITEYA GGDLLKLLLRKD  LGW+FRI++AKEG+EALEYLHSQ+LIHRDIKSSNFLLDADW CKLSDFGMARE
Sbjct:   84 GNKLPDFADSDFYVNPDSVTLGPSIGEGAFSTVYAGRYFGDTVAVKKQTRKGKDLEKYLLRELQVLKFIRHPNMLEYIGAYNVIAKSRGQLHAVYIITEYAAGGDLLKLLLRKDQELGWKFRIRVAKEGLEALEYLHSQELIHRDIKSSNFLLDADWRCKLSDFGMARE 252
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A7S2SRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRX7_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.430e-52
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:   10 LPDFEESDFYVEQEQVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVI------AKARG----QLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMARE 507
            +P FE+SD+ ++   V IGP +GEG FS V++G+YFG+VVAVK   R+   LE Y+LREL+VL YI H+ ML YIGA N +      A + G      H++ I+TE A+GGDL  LLL+ D  LGW+F  ++  E VE L YLH + +IHRD+K SN LLD +W  K++DFG+ARE
Sbjct:    8 IPSFEDSDYSLDLSDVEIGPLLGEGMFSKVYVGRYFGEVVAVKIMEREQERLETYVLRELAVLNYIDHERMLGYIGACNKVNPRSRFAGSEGLDAAPPHSLFIVTELAEGGDLHSLLLKTDQELGWKFLTRLVLEAVEGLRYLHERCIIHRDVKPSNLLLDRNWRIKIADFGLARE 183
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.020e-50
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 1 
Query:    1 GLQLPDFEESDFYVEQEQVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMARE 507
            G     F +SDFY+  + V+IGP +G+GAFS V++G+YFG++VAVKKQ R+  DLE YL+REL+VLK+ +H+N+L+Y+GA N  +   G    V I+TE A GGDLL LLL  +  +GW+ R+ I  +   AL++LH + LIHRDIKS N LLD+   CKL+DFGMAR+
Sbjct:   23 GDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVAVKKQARREADLEAYLMRELAVLKHFQHENLLQYVGASNAASAEPGGTGHVFIVTELACGGDLLALLL-SEKQVGWKLRVSILMDAARALDFLHRKSLIHRDIKSPNILLDSRHRCKLADFGMARQ 190
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A6H5L3U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3U3_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.800e-49
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:  235 GAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMARE 507
             AYNVIAK+RGQLHAV IITEYAQGGDLLKLLLR +TPLGWRFRIQIAKEG EALEYLHSQQLIHRDIKSSNFLLD DWHCKLSDFGMARE
Sbjct:   13 SAYNVIAKSRGQLHAVYIITEYAQGGDLLKLLLRTETPLGWRFRIQIAKEGAEALEYLHSQQLIHRDIKSSNFLLDGDWHCKLSDFGMARE 103
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.800e-48
Identity = 89/167 (53.29%), Postives = 120/167 (71.86%), Query Frame = 1 
Query:   10 LPDFEESDFYVEQEQVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRD-LEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMARE 507
            LP FEESDFY+  + V +G  +G+GAFS V++GKY G++VAVKKQ R   D LE YLLREL+VLK+  H N+L Y+GA +V  +      A+ I+TE A+ GDLL LLL   + LGW+ R+ +  +   ALE+LHS+ LIHRDIKS N LLD +++CK++DFGMAR+
Sbjct:   29 LPAFEESDFYLNMDDVLLGAQIGQGAFSKVYVGKYLGELVAVKKQKRAVNDGLETYLLRELAVLKHFEHPNLLSYLGASDVPGEGIDGASAIYIVTELAEHGDLLALLLGNYS-LGWKLRVSMLLDAARALEFLHSKSLIHRDIKSPNMLLDLNFNCKIADFGMARQ 194
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A836CNH5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH5_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.500e-46
Identity = 85/170 (50.00%), Postives = 116/170 (68.24%), Query Frame = 1 
Query:   10 LPDFEESDFYVEQEQVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKL-----SDFGMAR 504
            LP F+E+D Y+    + +G  +G+GAFS V++G+Y G++VAVKKQ R   +LE YLLREL+VLK+ +H+NM+ Y+G   V  +  G  H V I+TE A+ GD+L LLL     +GWR R  I  +   ALEYLH ++LIHRDIKS+N LLD +++CKL     S FGMAR
Sbjct:    3 LPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQV-CQPDGTAH-VYIVTELAEHGDVLALLLC-GAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMAR 169
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A3R7XCZ5_9PROT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TMED89 TaxID=1986647 RepID=A0A3R7XCZ5_9PROT)

HSP 1 Score: 145 bits (366), Expect = 1.730e-41
Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:  133 VKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMAREA 510
            +KKQ R+  +LE +LLREL+VLK ++H+NMLEY+GAYN +  A G  HAV I+TE A GGDLL LLL +   LGW+F  +I +     LE+LHS  LIHRD+K+SN LLDA W CKL+DFG+ REA
Sbjct:    1 MKKQVREQEELETHLLRELAVLKCMKHENMLEYLGAYNEVDPA-GATHAVYIVTELAAGGDLLSLLLSEHA-LGWKFLAKICRGAAAGLEHLHSHNLIHRDVKASNLLLDARWACKLADFGLCREA 124
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A1V9ZG44_9STRA (Protein kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG44_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.440e-35
Identity = 74/171 (43.27%), Postives = 109/171 (63.74%), Query Frame = 1 
Query:   10 LPDFEESDFYVEQE----QVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMAREA 510
            L D   +DF +E       V++GP +G GAFSTV+   Y G  VA+K+QT+       ++LREL++L+ I H ++L+YIG+         +   V I++E+ +GGD+ KLL +K  PL W   +QIA +  EAL+YLH + +IHRD+KS+N LLDA+  C+L DFG AR+A
Sbjct:   29 LDDDMVADFVLEHSLSPSDVSLGPIIGHGAFSTVYSATYEGRAVALKRQTKDA-----HILRELAILQQIDHPHLLKYIGSCEYEHMGTKE---VWILSEFYKGGDVSKLLKKKKKPLSWLQTVQIALDAAEALQYLHERNIIHRDVKSANILLDANLRCRLCDFGFARKA 191
[Close]
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Match: A0A7S3JXJ9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXJ9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.660e-34
Identity = 75/159 (47.17%), Postives = 98/159 (61.64%), Query Frame = 1 
Query:   52 QVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTRQGRDLE-----KYLLRELSVLKYIRHQNMLEYIGAYNVIAKARG--QLHAVLIITEYAQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSNFLLDADWHCKLSDFGMARE 507
            Q+ +GP +GEG F+ VFI +  G+ VAVKKQ     D E     KYL  E+SVL +  H N+L+YIG      K      +    I+TEY   GDLL+LL  K T + W  R+++++E  +A+ YLHS+ L+HRDIKSSN LLD  WH KL DFGMA E
Sbjct:   26 QIELGPKIGEGQFAKVFIARLAGEYVAVKKQLTDESDEEEMTMAKYLKLEVSVLAFCSHPNILKYIGCCLTQEKEDNGNDIKVTWIVTEYVACGDLLRLLEDKSTDIEWYMRLRMSRELGDAVSYLHSRNLMHRDIKSSNVLLDGAWHVKLGDFGMATE 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig188.4675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G911_ECTSI7.010e-10695.27LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
A0A835YUS4_9STRA1.320e-8881.07Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2SRX7_9STRA2.430e-5250.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5JRN5_9PHAE1.020e-5052.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L3U3_9PHAE1.800e-4992.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKA0_9STRA2.800e-4853.29LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A836CNH5_9STRA3.500e-4650.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A3R7XCZ5_9PROT1.730e-4157.94Non-specific serine/threonine protein kinase (Frag... [more]
A0A1V9ZG44_9STRA6.440e-3543.27Protein kinase n=1 Tax=Achlya hypogyna TaxID=12027... [more]
A0A7S3JXJ9_9STRA1.660e-3447.17Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig188contigH-paniculata_contig188:34303..40129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue2.3e-87
Seed eggNOG ortholog2880.D7G911
KEGG koko:K04427,ko:K20717,ko:K20718
KEGG Pathwayko04010,ko04013,ko04016,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04016,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1,2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons4
Model size511
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig188.4675.1prot_H-paniculata_contig188.4675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig188 34303..40128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.0536268-CDS-H-paniculata_contig188:34302..343561622929447.0536268-CDS-H-paniculata_contig188:34302..34356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 34303..34356 +
1691480865.0358078-CDS-H-paniculata_contig188:34302..343561691480865.0358078-CDS-H-paniculata_contig188:34302..34356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 34303..34356 +
1622929447.071215-CDS-H-paniculata_contig188:34631..348131622929447.071215-CDS-H-paniculata_contig188:34631..34813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 34632..34813 +
1691480865.049166-CDS-H-paniculata_contig188:34631..348131691480865.049166-CDS-H-paniculata_contig188:34631..34813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 34632..34813 +
1622929447.0919719-CDS-H-paniculata_contig188:39567..397151622929447.0919719-CDS-H-paniculata_contig188:39567..39715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 39568..39715 +
1691480865.0639026-CDS-H-paniculata_contig188:39567..397151691480865.0639026-CDS-H-paniculata_contig188:39567..39715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 39568..39715 +
1622929447.1105454-CDS-H-paniculata_contig188:40002..401281622929447.1105454-CDS-H-paniculata_contig188:40002..40128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 40003..40128 +
1691480865.0764565-CDS-H-paniculata_contig188:40002..401281691480865.0764565-CDS-H-paniculata_contig188:40002..40128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 40003..40128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig188.4675.1

>prot_H-paniculata_contig188.4675.1 ID=prot_H-paniculata_contig188.4675.1|Name=mRNA_H-paniculata_contig188.4675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
GLQLPDFEESDFYVEQEQVNIGPAVGEGAFSTVFIGKYFGDVVAVKKQTR
QGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKARGQLHAVLIITEY
AQGGDLLKLLLRKDTPLGWRFRIQIAKEGVEALEYLHSQQLIHRDIKSSN
FLLDADWHCKLSDFGMAREA
back to top

mRNA from alignment at H-paniculata_contig188:34303..40129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig188.4675.1 ID=mRNA_H-paniculata_contig188.4675.1|Name=mRNA_H-paniculata_contig188.4675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5827bp|location=Sequence derived from alignment at H-paniculata_contig188:34303..40129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCTGCAACTCCCGGATTTCGAGGAATCTGATTTCTATGTGGAACAGGA
GCAGGTGATCAATCAAGTACTGGTAGGGTGTGAGGTACGCTCTTTATTGT
TTACCTGTCTCGCTTCCACGGGTGGAAAGTTCTAGTGAAGCATCATCCCG
GCTATAGGCCGACATATAGTCACTCAGTATGATGAAGCGCTACAGTGATT
TCTTTTATAAATGCGAAGTTGGAAGTGAGAATTGGGAGAAATGTCCCTGT
GTTTTTCTGTTTTTGTTACAGTCACGAAGAAGAGAAGTTCGGGCGGCTTG
TGTGACGAAACGCTCAAACGTCTCGACAGGTGAACATAGGACCCGCGGTG
GGGGAAGGCGCGTTCTCCACGGTTTTTATTGGGAAATACTTCGGAGATGT
GGTGGCCGTGAAAAAGCAGACACGGCAGGGCCGGGATCTGGAAAAATACT
TGCTGCGGGAGCTGTCGGTGTTGAAGTATATTCGACATCAGAATATGCTG
GAATACATTGGGTGAGAAACACTCCGCAGAGATCTCTGAAGTGCAGTGAA
TGTCGACGGTCGTAAACTCCTTTGCACTCACCTTCGGGGACTGCTCTACT
CATGAACACTTTCTACTCCAGGTACATTTACATGTTTTTTTGTTCTGAAG
TTCCTGTCCATAGCTCAGAGAGCATGTTGCAGTTCTACAACTTGAGTTAT
GTTGTGATTTGTATTGCAAAAAACTACAAGCAACAGGCAGGCTCGGCGAC
ACCAGTGGCATACCCCTGAAACTGTTCCTTGTCACATGACACTTTGAAAA
AGACTTGAATTGAGACAAGAAATTGTTCCGAGATAAGTTAATCGTCATAA
TCGTGTAGATACATTGTACTGTCTGTCGCTGTATATAGGTTTGCTGGTAT
CAATACCTTCGGAACGCGGCTTTTGTTTCAAAAAGCCGCAGTCTCACTTG
GTGTCAACAAAACTTTTAGTCAAGATCATGAAATCCCAATTTTTTGCTGT
GAAATAAAATGATTGGGAACAATTGATTGCTCATCTTATGGGGTCGGGCC
TGAGTCGAAAACATAAAATGTTGTCAGTTAAATGTTTGGTCGCTTTTTGC
TAGTGGCGCAATTAAGTTGAGAGAATTTCGAACACACGAGTTCTCTTCCA
GCACACCCTCATCCTGTGAAAGCGGACCACCATGATGCACCATCCACCGC
AATGTTTGTCAAGGCAAAAACCCTTGCGTGGAATGGGTGTTGAAGGAAAT
GAGGGCTCAGGGATTACATTCGGGTGTGTGCAAGACACAATGGATCATTC
TACAGAATGTACCACAGGGGTGCGCTTGTACGCCTGTAAAGAAGAACGGT
GGAACCCTGCCCCTGAGCGAGAGGTACAAGAAGGTGGTGCAGCTATACAT
GGATTTCGCCGTTGACAGCTTCTTTCGCTGGGTGGAGTAAACGCCCGAGT
TCGATCTCCCTGGGTGGGCGACTCACAGACTGTTTGGAAAGATAACAAGC
GCCGCTGGACCCATGCGTCGATTGTGTCTGTCGTCCTCGTCTAGAAAATA
TCGACGGCCGCCACTACAGCAGCGAGCGCCGCCGATATGAACGATTGCAA
TTGCTGCAGATCTTCCATAGAGCGGTTGGGCTTACACCTTGGATTTTGTG
TACGTGCGTCGTACTGGCATCTGTGACCAGCGCGGGTGTTTTACTGTGGG
CTATGAGACGTCATCCAGGAGAACACGCCTTTGTATCTCGTTGAAGTACC
ATTTTCATGATTTTGCGGGGGTGTCATTCTCGAGTAAAAAAAATGTGATT
TGTTTTACTCGGGGATCTGTCGATCCTCCACGATCATGAAATTCGTGTCG
AACAAACTGTTTTTTCACCAAAAAATAATGGATAAAAATCTTCCGTAAAA
ATTGGGATTTTCTGAAAGTGATGGGAGTTTTTGACACCGTAAGAGATGGT
CTTAACCTACCTCGACCCTATTTTTATTGTTTTCCAATATATAACGCCAT
ATCGCATTCGAAATGCATGGCCCAAAAGCAGATCCCAGAAAACAGATTTT
CAAGGTGTGAGCCCCTCAGCCGTCAACTTCTACCGAATGGAGCACAACTC
TCATAGAGCGCTCGCAGTCTACGAATAATACTTGATTTTATCTACAATTC
TCTTTACATTCAGTGCAGAAGCTGAGTTTTGTCCAGAGCAAAAATCGTTT
CTCGCCAAATCGAATATTTCCAGATTATGGGGCAGAAATCATTTTTTTTT
CTTAACGAGAGAACGGATTTGGGTGTCGGAGACAGTGGAGTTCACCACTT
TGTCGAATGCGATGGTTGAGGTATACAAACCTAGCATACCACGATGATTG
ATGACGTCATGTCGACGTCACGCGCTGGAGGACCCACAACGTGCCCAAAG
ATTGAACTCTGCTAACGCACACTAGGTCTAAGGGATGGGAGTAAGGGCGA
GGAGTAGCGGTAGTTTCGGTATTGTTTATTCCCTCGTCGGCACACAACAA
AGGATGAACCACAAAACAGATAACTATCAACCCCGGAGATGTCGAGTTTT
GTACTGCTGACTGTTGCAAATTGGTTGGGGGTAGCAAAGTCCAGTAAATG
TCAGAAAAAATGAAGTGAGGAGCACTGCACACAGATATCTCATCGATATC
ACCAATACGAAGGTCCTTGTTGTCGACTGAAACCTCTGGTGAGTGACGCT
CAAGTTCTTCTGTGCTGTGTCATCGAGGAGATCCAATTTCATCCTCGGCT
AAAGACCAACAGTTTTACAGTGTGCGAGGTGGCTGGAGTGCTCCTCTTGG
GGACCCTCCTTCGAGGCCTCGAACGAGCATTTATGTATGAAGATTATCGG
AATTTGACGGTTGAAACCTGTTCTAAAAGTTTGGAAACCGGCGATGGATT
TGAATCTTGGTGTACTGCACATGTGTGTAGTGGAATTTCCAATATGAGCT
ACTTCTCCGAAAACCCTGGCTTCTACAAAGTGTCTCAAAGCAACACGCAC
AGAGGCAGAATATGCACTGGTCCGTGCAGTAGCTCTTACTCAGTTGTATG
CGCCAGGCCTGGTTTGACGGAAGTACACCCTGTATTGGGGGAGCTATAGC
TGTTCACGTGTCATTTGGAATTACCAAACGCTCTTGAGCCTGCCTATTTC
GGCTGGTTTGTCCACGAAACATACCTGTTCTCTTTCATATTTCAACTGAT
TCTGCCCAAACAAAGTAAAGGGGCTTAGTTGATCGATGACTATGGTCCGG
ACTACGTTCTGTACACCCGGGCAGTGTTGATTTATTTGGCCGAGAAATAG
CAAATATGATCATGGTGTCTTCTGCTAAAGGACATGCCAACGACACGAAA
ATTGGACCACATGCTGCCAGGGCTTACACCACTCTCTCAGCCAACTCTCA
ATCCAAATCGGACCATTTTGAGCTTGTACGGTGATTATTTCGTAAGTTAG
TGTCCGTTTTGAAATTATATCCTACGTCGCGCACACACCCGAACAGCCTT
TTCTTCGCTGAAATGACGGGCCACATCCCACACGACACGGTGGAAGTAAC
CGTGGTGAGGAATATGTCGCCTAGCGAAAGATATTCCTACCGGACCACAA
AGTACAAAACAAGAAAATGAAGCTTCCATGCCCAATTTTCAAGATTCATT
TAGCGATCAAAATTTTAAGAATTTAAGTGTCAAATTGCATCATCAGTGTC
CATTAAAAAATATCATAGATTTTAGCCATACCATTGAAACATGTCCTCCT
TCTGTGAAATGATAGGGTACATCCCATACTACACGATGGGAAAACCTGCA
CTACAGGGCACCCCGTTCCGCCAAAGATATGCCCACAGGACCAAACAGTG
TAAAACAAGACGACAGAGTTGGCATGTACTAACTTCAAGATGTGTTTACT
AATTCAACTGACTTTACAATCCACGACAAATCTGGTTGCTAAAAACATGT
TAAAATTTGTCCAAGGAAGCGGTATTTTCTTGTTTGGTATTGTGTGGTCT
GGTCGGGATATCTTCCGATAAGCGGCGTGTTCCTCATCGTGGTTCCTTCC
ACTGTATAGTACGAGATGCAGCCCGTCATTTCACCGAAGAATGAGCTTTT
TGGGGGGTGTGCGCGACGTAGGATGTCGTTTCAAAACGGACACTAAATAC
GAAACAATCACCGTACAGGCTCAAAATAGCTGCGCGCGAAGGGTGTGATA
TTTGTTTGGGCGAGTTAACTTCAAATAGTCATAATCTAGGGAGATCCCAA
GGATCCTATTGTCCTGCATGTTTGTTATTGGTTCGGTAGATTTTTACTTT
CAATTGCGGATATAAAGTACTGAGATTGTGCAGCAGCGATCATTGCAGCT
TCATGTACAGATTTTTTTATCTCCGCGAGCGATTTTAAAGACACACAGCA
ACCAGTGGCTCTGAGAAAAGCGACCAAAATCGCATTATCGTTGTCATTTT
CCAGCCAAATATATTACCACGTTGGAAGCGTAATCATCAGAATCACTGTA
TTGAATTCCTTTGTCACACGTTGCAATTTACCGCCTTTGGCCTCTTGGTC
GACATCAAGGGGCTTGGTCGTACCTTCGCCGCCGTCTTCCAATCATAGGC
ATGATCTTGTTCAGTTTTGCGCCCTTCAACAATAAAATCTCAAATCTGAT
TCGAAAAGTATTTTTGACTATCCATAATCTGCGCTGTAGAATCGGGTTTT
TGGCATTGTGAAGGCGTGACCAGTAGCGACCAGCGTTCGGACCAGTTTCC
CAACCAATCACAGACCATCTAGCCAGAATCGATTTCTTGGGAGTTTGACA
AAAAGCTTGTTTTTCTTTCAACAAGACTCGGCCTCAGATACTCGGTCAAA
TAATGAGCATGCCGCAGTACATAATGCACTCGGAAAATCTACATTTTTGC
CAAATACAGCCATTGCAAGTATCTGATCGCTCTTATATTCACAATTCGGC
TCTACAGCACAACGAGCCTGCTGTGAAAGCATGCCCCAATTTCATCCTTG
TTCACTCTCCGGATGTCGCCAGATATCACTACACTTGAATTAAAACCCTG
TAGTTCAGAGTCTACAAATCGCACATATTTATAACTTGTTTTTTCACAAC
ATATAGCGAGTATTTCCATGGCTGAGCATTACTATAACCACATGTGGAAT
GTTTTCAAACGCAAGTTCTGAAGCAAACGTAGAGAAGATATGATGTCGGT
TGCTTTAGTTTGTTTGTTCGCCTTGAGTGCAGACCTTGTCGCTATCCTTG
TGCCGTTCGTTTCAGTGCATATAACGTGATCGCGAAGGCGCGAGGGCAGC
TCCATGCGGTGTTAATCATAACAGAGTATGCTCAAGGAGGCGACCTGCTC
AAGCTGCTGTTGAGGAAGGATACGCCTCTTGGATGGAGATTCCGGATACA
GATTGCGAAGGAGGTATGTGCTGCTGAGGAGTCGGGCACGCAGTTCACGA
CACTGATACGAGGATGTTACACTACCCGTACATTTATTCAAGCTTCAGTT
GACAAACCAGTAACTTGAAATGTGGACCCTTCTGCTCCACGAAGTAGGAG
ACCTCCCTTGCAGAAGGCAAACTTGCCTAAGCCTAAGCTGCATATAGAGC
ACCGCTGAGAGTACTCAGCACGGCAGATTTTGGTGGCGTAACCAGCGACG
TGTTGTGAAGTTGACGTCATCTTTCTTCACATTAAATCAATTTCCGCCAG
GGCGTGGAGGCACTTGAGTACTTGCACAGCCAGCAGCTGATCCACCGCGA
TATCAAGAGCAGCAATTTTTTGCTGGACGCGGACTGGCACTGCAAGCTAA
GCGACTTCGGCATGGCGAGGGAGGCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig188:34303..40129+

>mRNA_H-paniculata_contig188.4675.1 ID=mRNA_H-paniculata_contig188.4675.1|Name=mRNA_H-paniculata_contig188.4675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig188:34303..40129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCTGCAACTCCCGGATTTCGAGGAATCTGATTTCTATGTGGAACAGGA
GCAGGGCCTGCAACTCCCGGATTTCGAGGAATCTGATTTCTATGTGGAAC
AGGAGCAGGTGAACATAGGACCCGCGGTGGGGGAAGGCGCGTTCTCCACG
GTTTTTATTGGGAAATACTTCGGAGATGTGGTGGCCGTGAAAAAGCAGAC
ACGGCAGGGCCGGGATCTGGAAAAATACTTGCTGCGGGAGCTGTCGGTGT
TGAAGTATATTCGACATCAGAATATGCTGGAATACATTGGGTGAACATAG
GACCCGCGGTGGGGGAAGGCGCGTTCTCCACGGTTTTTATTGGGAAATAC
TTCGGAGATGTGGTGGCCGTGAAAAAGCAGACACGGCAGGGCCGGGATCT
GGAAAAATACTTGCTGCGGGAGCTGTCGGTGTTGAAGTATATTCGACATC
AGAATATGCTGGAATACATTGGTGCATATAACGTGATCGCGAAGGCGCGA
GGGCAGCTCCATGCGGTGTTAATCATAACAGAGTATGCTCAAGGAGGCGA
CCTGCTCAAGCTGCTGTTGAGGAAGGATACGCCTCTTGGATGGAGATTCC
GGATACAGATTGCGAAGGAGTGCATATAACGTGATCGCGAAGGCGCGAGG
GCAGCTCCATGCGGTGTTAATCATAACAGAGTATGCTCAAGGAGGCGACC
TGCTCAAGCTGCTGTTGAGGAAGGATACGCCTCTTGGATGGAGATTCCGG
ATACAGATTGCGAAGGAGGGCGTGGAGGCACTTGAGTACTTGCACAGCCA
GCAGCTGATCCACCGCGATATCAAGAGCAGCAATTTTTTGCTGGACGCGG
ACTGGCACTGCAAGCTAAGCGACTTCGGCATGGCGAGGGAGGCAGGCGTG
GAGGCACTTGAGTACTTGCACAGCCAGCAGCTGATCCACCGCGATATCAA
GAGCAGCAATTTTTTGCTGGACGCGGACTGGCACTGCAAGCTAAGCGACT
TCGGCATGGCGAGGGAGGCA
back to top