mRNA_H-paniculata_contig188.4673.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig188.4673.1
Unique NamemRNA_H-paniculata_contig188.4673.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-12
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  255 PYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVR 542
            P A AA IR+        D+E+ H+D +QA+  + +D E+++ LP   G   G V RLNK++YGL Q  R +  +L  DLK   FEQS  D CV+R
Sbjct:  867 PTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLR 962
[Close]
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5JZZ0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 5.080e-12
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 3 
Query:  165 KTRRGSPIQVPLRRPGLPSEQGATL*GVIVPYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVRNFVPG 557
            +TR+ S  +      G   + G        P A AA IR+        ++E+ HFD DQA+  +++D E+++ LP +     G + RL+K++ GL Q  + +  +L  DL    FEQS  D CV+R F+ G
Sbjct:    9 RTRQDSEAKARFVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYNLELLHFDIDQAFVQSELDHEVFIKLPPDCESMSGKLVRLDKSLCGLRQASKTFQKRLVSDLNKIGFEQSLSDPCVLR-FIMG 138
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BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.090e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  255 PYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVR 542
            P A AA  R+        ++E+ H+D +QA+  +++D E+++ LP   G   G V RLNK++YGL Q  R +  +L  +LK   FEQS  D CV+R
Sbjct:   69 PTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLR 164
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BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.580e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  255 PYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVR 542
            P A AA  R+        ++E+ H+D +QA+  +++D E+++ LP   G   G V RLNK++YGL Q  R +  +L  +LK   FEQS  D CV+R
Sbjct:  634 PTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLR 729
[Close]
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.710e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  255 PYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVR 542
            P A AA  R+        ++E+ H+D +QA+  +++D E+++ LP   G   G V RLNK++YGL Q  R +  +L  +LK   FEQS  D CV+R
Sbjct:  535 PTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLR 630
[Close]
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.140e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 3 
Query:  255 PYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVR 542
            P A AA  R+        ++E+ H+D +QA+  +++D E+++ LP   G   G V RLNK++YGL Q  R +  +L  +LK   FEQS  D CV+R
Sbjct:  802 PTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLR 897
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BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A371HD92_MUCPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HD92_MUCPR)

HSP 1 Score: 70.5 bits (171), Expect = 9.040e-11
Identity = 49/174 (28.16%), Postives = 88/174 (50.57%), Query Frame = 2 
Query:  572 LVVHVDNLLALTTTKGVMEALVGDLRLKYRVKDLGEASYYMGCHIIHNREKKELKFDQHLYAQTITDHFEINKTA------VKEDE---SQTPE---EKEEMGGIPYHKTVGG-----------WKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSES 1024
            LV++VD++L  ++  G++      L   + +KDLGE S+ +G  I+ +  +  L+  Q  Y   + + F +  +        K D+    Q P    E+ EM  IPY  TVG            WKAV ++++Y+RRT+G  + +   ++  +E+  ++DS+ A C D++ S S
Sbjct:    3 LVLYVDDILLASSDTGLLHETKRFLTKNFEMKDLGEVSFVLGIQILRDHSQGILRLSQENYISKVLERFGMKDSKPGDTPIAKGDKFSLKQCPNNDLERNEMQKIPYASTVGSLMYLNDPGMQHWKAVKRVMRYLRRTKGYMLTYR--KSEGLEIIMYSDSDFAGCQDSKHSTS 174
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BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5JJC4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-10
Identity = 40/116 (34.48%), Postives = 62/116 (53.45%), Query Frame = 3 
Query:  210 GLPSEQGATL*GVIVPYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVRNFVPG 557
            G   + G        P A AA IR+        ++E+ HFD +QA+  +++D E+++ LP +     G V RL+K++YGL Q  R ++ +   DLK   FEQ   D CV+R F+ G
Sbjct:   87 GFEQKHGVDYLETFSPTANAASIRLLVALTCKYNLELLHFDIEQAFFQSELDHEVFMKLPPDCESMSGKVVRLDKSLYGLRQASRTFHRRQVWDLKAIGFEQPLFDPCVLR-FIMG 201
[Close]
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.770e-10
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3 
Query:  255 PYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVR 542
            P A AA  R+        ++E+ H+D +QA+  +++D E+++ +P   G     V RLNK++YGL Q  R +  +L  +LK   FEQS  D CV+R
Sbjct:  976 PTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLR 1071
[Close]
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.340e-9
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 3 
Query:  255 PYARAARIRMAFTTMATTDMEIRHFDFDQAYQLADIDTEMYVDLPEEYGEFPGAVRRLNKAIYGLMQVGRCWNMKLTDDLKTSEFEQSHGDACVVR 542
            P A AA  R+        ++E+ H+D +QA+  +++D E+++ LP   G   G V RLNK++Y L Q  R +  +L  +LK   FEQS  D CV+R
Sbjct:   69 PTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSELKRIGFEQSMSDPCVLR 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB16_9PHAE2.600e-1241.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZZ0_9PHAE5.080e-1232.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE3.090e-1138.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3Y0_9PHAE5.580e-1138.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE5.710e-1138.54Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE6.140e-1138.54Integrase catalytic domain-containing protein n=2 ... [more]
A0A371HD92_MUCPR9.040e-1128.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJC4_9PHAE2.800e-1034.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZH7_9PHAE4.770e-1036.46Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B2_9PHAE1.340e-937.50Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig188contigH-paniculata_contig188:19363..20406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1027
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig188.4673.1prot_H-paniculata_contig188.4673.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig188 19363..19767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929446.73226-CDS-H-paniculata_contig188:19362..197671622929446.73226-CDS-H-paniculata_contig188:19362..19767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 19363..19767 -
1691480864.8547027-CDS-H-paniculata_contig188:19362..197671691480864.8547027-CDS-H-paniculata_contig188:19362..19767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 19363..19767 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929446.7492192-UTR-H-paniculata_contig188:19767..202261622929446.7492192-UTR-H-paniculata_contig188:19767..20226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig188 19768..20226 -
1691480864.8672228-UTR-H-paniculata_contig188:19767..202261691480864.8672228-UTR-H-paniculata_contig188:19767..20226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig188 19768..20226 -
1622929446.7677891-UTR-H-paniculata_contig188:20243..204061622929446.7677891-UTR-H-paniculata_contig188:20243..20406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig188 20244..20406 -
1691480864.8766804-UTR-H-paniculata_contig188:20243..204061691480864.8766804-UTR-H-paniculata_contig188:20243..20406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig188 20244..20406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig188.4673.1

>prot_H-paniculata_contig188.4673.1 ID=prot_H-paniculata_contig188.4673.1|Name=mRNA_H-paniculata_contig188.4673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MEALVGDLRLKYRVKDLGEASYYMGCHIIHNREKKELKFDQHLYAQTITD
HFEINKTAVKEDESQTPEEKEEMGGIPYHKTVGGWKAVVKILQYVRRTQG
MGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG
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mRNA from alignment at H-paniculata_contig188:19363..20406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig188.4673.1 ID=mRNA_H-paniculata_contig188.4673.1|Name=mRNA_H-paniculata_contig188.4673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig188:19363..20406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTCCCCCCCGAGCCCCCGAACCACCGTGAAGCCATGGAATCACCGCA
GTGGGAATTCTGGGACGCGGCGAAGAGGACAGAGATCGTCGACTTAATCA
GAAAGGGAGTATGGACGCAGTGCCCGCGGCCCGAAGGAAATGTGGTGCTG
GGTAAAAGCGACTGTACAGCGGGAAGATAGGAAAACACGGCGAGGTAGTC
CAATACAAGTGCCGCTTCGTCGCCCAGGGCTTCCGTCAGAGCAAGGCGCT
ACATTATGAGGAGTCATCGTCCCTTACGCTCGCGCGGCCAGAATTCGCAT
GGCGTTTACGACCATGGCAACGACGGACATGGAGATACGCCATTTCGACT
TCGATCAGGCGTACCAGCTGGCCGACATCGACACCGAGATGTACGTCGAT
CTACCGGAGGAGTACGGGGAGTTTCCGGGCGCAGTGAGAAGGCTGAACAA
GGCAATCTACGGCCTGATGCAGGTCGGCAGGTGCTGGAACATGAAGCTCA
CCGACGACCTAAAGACGTCGGAATTTGAGCAGTCACATGGCGATGCCTGC
GTTGTCCGAAATTTTGTTCCGGGGAGCTGGTGGCGACGCTCGTGGTGCAC
GTGGACAACCTTCTAGCCCTGACCACCACGAAGGGGGTAATGGAGGCGCT
CGTGGGGGACCTGCGCTTGAAGTACAGGGTCAAGGATCTAGGGGAGGCGT
CGTACTACATGGGCTGCCATATCATCCATAACCGAGAGAAGAAGGAGCTA
AAGTTCGACCAGCACCTCTATGCGCAGACGATTACGGACCACTTCGAGAT
TAACAAGACTGCTGTTAAGGAGGACGAGTCCCAGACCCCAGAGGAGAAGG
AGGAAATGGGCGGAATCCCGTACCACAAGACAGTGGGGGGCTGGAAGGCT
GTGGTGAAGATCCTACAGTACGTGCGGAGGACCCAGGGTATGGGAATCCC
CTTCGGCGGAGACAGGAACGGCAGGATCGAGATGCCGGCATTCGCCGATT
CGAACCACGCTACCTGCCCGGACACCAGGCGGTCGGAATCCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig188:19363..20406-

>mRNA_H-paniculata_contig188.4673.1 ID=mRNA_H-paniculata_contig188.4673.1|Name=mRNA_H-paniculata_contig188.4673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig188:19363..20406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCGCTCGTGGGGGACCTGCGCTTGAAGTACAGGGTCAAGGATCT
AGGGGAGGCGTCGTACTACATGGGCTGCCATATCATCCATAACCGAGAGA
AGAAGGAGCTAAAGTTCGACCAGCACCTCTATGCGCAGACGATTACGGAC
CACTTCGAGATTAACAAGACTGCTGTTAAGGAGGACGAGTCCCAGACCCC
AGAGGAGAAGGAGGAAATGGGCGGAATCCCGTACCACAAGACAGTGGGGG
GCTGGAAGGCTGTGGTGAAGATCCTACAGTACGTGCGGAGGACCCAGGGT
ATGGGAATCCCCTTCGGCGGAGACAGGAACGGCAGGATCGAGATGCCGGC
ATTCGCCGATTCGAACCACGCTACCTGCCCGGACACCAGGCGGTCGGAAT
CCGGGATGGAGGCGCTCGTGGGGGACCTGCGCTTGAAGTACAGGGTCAAG
GATCTAGGGGAGGCGTCGTACTACATGGGCTGCCATATCATCCATAACCG
AGAGAAGAAGGAGCTAAAGTTCGACCAGCACCTCTATGCGCAGACGATTA
CGGACCACTTCGAGATTAACAAGACTGCTGTTAAGGAGGACGAGTCCCAG
ACCCCAGAGGAGAAGGAGGAAATGGGCGGAATCCCGTACCACAAGACAGT
GGGGGGCTGGAAGGCTGTGGTGAAGATCCTACAGTACGTGCGGAGGACCC
AGGGTATGGGAATCCCCTTCGGCGGAGACAGGAACGGCAGGATCGAGATG
CCGGCATTCGCCGATTCGAACCACGCTACCTGCCCGGACACCAGGCGGTC
GGAATCCGGG
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