mRNA_H-paniculata_contig188.4672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig188.4672.1
Unique NamemRNA_H-paniculata_contig188.4672.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig188.4672.1 vs. uniprot
Match: A0A6H5K8D8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D8_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.000e-40
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 GQALEVVSSTCLVMMSTLRLDRAGRNGPVPDKYIYDVMCADECVLSDSLREEAMAFTGCTCLQLSSQPADLTYHLLGDWCRKNSGR 258
            GQALEVVSSTC VMM TLRLDRAGRNGPV DKYIYDVMCA+EC LSDS+REEAM  + CTCL+LS+QP++  YH  GDWC +NSGR
Sbjct:  113 GQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGR 198
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BLAST of mRNA_H-paniculata_contig188.4672.1 vs. uniprot
Match: A0A835Z9M4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.300e-26
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 GQALEVVSSTCLVMMSTLRLDRAGRNGPVPDKYIYDVMCADECVLSDSLREEAMAFTGCTCLQLSSQPADLTYHLLGDWCRKNSGR 258
            GQA+E  ++ C + +  LRLDRAGR+GPV + +I+DVMC+DECV SD+LR  AMA  GC CL LS+Q    +Y   GDWC  NSGR
Sbjct:   70 GQAMEKAATKCKLKLEQLRLDRAGRHGPVEEWWIFDVMCSDECVQSDALRRAAMAACGCDCLALSTQAGAPSYRAAGDWCAHNSGR 155
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BLAST of mRNA_H-paniculata_contig188.4672.1 vs. uniprot
Match: A0A482SVE4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVE4_9ARCH)

HSP 1 Score: 80.9 bits (198), Expect = 8.300e-17
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    7 ALEVVSSTCLVMMSTLRLDRAGRNGPVPDKYIYDVMCADECVLSDSLREEAMAFTGCTCLQLSSQPADLTYHLLGDWCRKNSGR 258
            A+ +    C  M  +L L R+GR GP+  +  Y +MC D C+ +D+L E AM  TGC+CL+LS+QP D+++   GDWC +N+ R
Sbjct:   73 AMSLALRGCQRMFESLYLYRSGRMGPINIQDSYKIMCRDYCIENDNLHEIAMNITGCSCLELSTQPGDISFTKEGDWCSQNTAR 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig188.4672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K8D8_9PHAE3.000e-4076.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9M4_9STRA4.300e-2655.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SVE4_9ARCH8.300e-1742.86Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig188contigH-paniculata_contig188:17761..18018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue7e-32
Seed eggNOG ortholog2880.D7FY74
Hectar predicted targeting categoryother localisation
EggNOG OGs2CP61@1,2S42B@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_003540.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929446.6824682-CDS-H-paniculata_contig188:17760..180181622929446.6824682-CDS-H-paniculata_contig188:17760..18018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 17761..18018 +
1691480864.8419583-CDS-H-paniculata_contig188:17760..180181691480864.8419583-CDS-H-paniculata_contig188:17760..18018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig188 17761..18018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig188.4672.1prot_H-paniculata_contig188.4672.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig188 17761..18018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig188.4672.1

>prot_H-paniculata_contig188.4672.1 ID=prot_H-paniculata_contig188.4672.1|Name=mRNA_H-paniculata_contig188.4672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
GQALEVVSSTCLVMMSTLRLDRAGRNGPVPDKYIYDVMCADECVLSDSLR
EEAMAFTGCTCLQLSSQPADLTYHLLGDWCRKNSGR
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mRNA from alignment at H-paniculata_contig188:17761..18018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig188.4672.1 ID=mRNA_H-paniculata_contig188.4672.1|Name=mRNA_H-paniculata_contig188.4672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig188:17761..18018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCAGGCGCTTGAGGTGGTTTCGTCGACTTGCCTGGTTATGATGAGCAC
GCTGCGCTTGGATCGAGCTGGTAGAAATGGCCCCGTCCCTGACAAGTACA
TATATGACGTCATGTGCGCGGACGAGTGCGTCTTGAGTGATTCGCTCAGG
GAAGAAGCCATGGCATTCACGGGGTGTACATGTCTTCAGTTATCAAGTCA
GCCAGCGGATCTAACCTATCACTTGCTCGGTGACTGGTGCCGGAAGAACT
CTGGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig188:17761..18018+

>mRNA_H-paniculata_contig188.4672.1 ID=mRNA_H-paniculata_contig188.4672.1|Name=mRNA_H-paniculata_contig188.4672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig188:17761..18018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCAGGCGCTTGAGGTGGTTTCGTCGACTTGCCTGGTTATGATGAGCAC
GCTGCGCTTGGATCGAGCTGGTAGAAATGGCCCCGTCCCTGACAAGTACA
TATATGACGTCATGTGCGCGGACGAGTGCGTCTTGAGTGATTCGCTCAGG
GAAGAAGCCATGGCATTCACGGGGTGTACATGTCTTCAGTTATCAAGTCA
GCCAGCGGATCTAACCTATCACTTGCTCGGTGACTGGTGCCGGAAGAACT
CTGGAAGGGGTCAGGCGCTTGAGGTGGTTTCGTCGACTTGCCTGGTTATG
ATGAGCACGCTGCGCTTGGATCGAGCTGGTAGAAATGGCCCCGTCCCTGA
CAAGTACATATATGACGTCATGTGCGCGGACGAGTGCGTCTTGAGTGATT
CGCTCAGGGAAGAAGCCATGGCATTCACGGGGTGTACATGTCTTCAGTTA
TCAAGTCAGCCAGCGGATCTAACCTATCACTTGCTCGGTGACTGGTGCCG
GAAGAACTCTGGAAGG
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