mRNA_H-paniculata_contig188.4671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig188.4671.1 vs. uniprot
Match: D7G913_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G913_ECTSI) HSP 1 Score: 488 bits (1257), Expect = 2.740e-156 Identity = 371/866 (42.84%), Postives = 449/866 (51.85%), Query Frame = 3
Query: 114 EQRASEDDDVDVDHYFLPGGILDTLSQREEDMIGGSLLDEIGGVGNVL-LPSTQSKVSRIVGSGDPQAAVEVCEVHVKDLEKRSRQPSPSVGEGLPIRLSVEGTNPMAKEFTPSMDLLALDVAIEAKSGLGAPPSSNQRHISDMPWP---TRAFSTAVGSEVKNGVTEQPCHRTLQRQPRKLARQIPTALPLQRP---SQGVLGGQGQDQ-RHQPG---WAARVTSGQSPARSSMATRATHSSSLVSVKHRLPTVNHGHQALPPRLAPP-VGLQQRGNQDQLQRQAVVPGQWHRRECGIPGTY---DGGKSGQHMGTT--------EDFSDRTPQPKAGPPSDHLAQTQRKHRSQGSVRQLQPGEHGGGHSLPVAKSGSLVAASVRYGRTYEGIGRDQGRVSSKVLLRSSEGEQDAASRRSHANNNNGQHPISKVPSRRGELVQDVAQSGHDSNSGSTGENDADTSVSHWCPTESEGTDHRSTPSQPPRGRLATGRQPVDRNSETVSTEGESTLVIDAYLDLSPVRWSGHTVERGAHQVKSEDDAIGLPQSHAXXXXXXXXXXXKEEKTYKPAP-KQLLEASTKESNRARFGTRLNIWQR----WGELRASILGVARGVLTAIVRAFAYCLSRLHIFRRLLALMSFAASSTVAMLSMVITTASWLLLMGLRVHSLALKEATGSIHVAVCFLFPYFFQYFVSMVDQWAPHWLPACLWYSFLMQMSCTSNHLCQHSIPSHLVPALRALLPVAFLCEVPSGRSYLLALGGSELLLLSFTLAAIRLRCLFSPVFLLSWSFVHHILPLRPTTAQVFAIATFGSSSGLQYCQLLISLASLHTVSMVDIMLNSRFYHARYRAGMSLTSGFRAI 2627
E S++DD++VDHYFLPGGILDT EEDMIGGSLLDEIGGVGNV L + SRIVGSG + ++ R+ + +G G P RLSVEGTNPMAKEFTPS + D A+E +G ++ RH P P R FS AVGSEVK E P +QRQ R L P +Q LG + Q RHQPG W R T S H + KHRL G + VG QR +Q Q AV G R PG G + H + EDF D T QP G L + Q L P E G LP S L +++ R G E RD G S +P+ T S GT +S+ S GR+++ ER + Q + ED++ QSH K+++TY+ AP KQ+L + KE +R + GTR ++ Q+ G LR+S LG+ + AIVR A+ L+RL + RR+L L+SFAASS+V++LS VI + SWL L+GLR+HSLALKE TGSIHVAVCFLFPY FQY VS +D+WAPHWLPACLWYSFLMQM CTSNH +HS+ SHLVPALRALLPVAFLCEVPSGRSYLLALGGSELLLLSFTLAA+RLRC+FSP+FLLSWS QVFA+AT GSS+ LQY Q+L+SLASLH VSMVD+MLNSRFYHARYRAGMSLT+GFR +
Sbjct: 2 EANNSKEDDIEVDHYFLPGGILDT--HHEEDMIGGSLLDEIGGVGNVTALHPAKQMASRIVGSGPRTDLPPAATASDRRPQQFHRKITSVIGGG-PTRLSVEGTNPMAKEFTPSTCSIPADAAVELPTGSL---HAHSRH----PAPETVNRVFSAAVGSEVKTAAAELPYRTAMQRQSRNLQGPPXXXXXXXXPQPAAQRSLGDRAQQHPRHQPGGKPWPVRATVTHS-----------HPGPTLPSKHRLTIAKGGSSTGRDHVHDDTVGRGQRVDQVQ----AVSRGPSRNRIQAQPGVRRVSHGQANSPHQDASTKVSSRRQEDFVDHTAQPSVG---SRLESARDDSSQQPMSTSLFPVEQGQ-EMLPPQASNGLSSSAQRQGSHAERTARDDGEPS--------------------------------LPA-----------------------------------TSSSGTPQQSSSS----GRMSSSN------------------------------------ERSSRQARPEDESACHLQSHVHKEKDKGKFKKKDDRTYRAAPNKQVLGTAVKEPSRMKLGTRPSLSQKIRLMGGYLRSSSLGI----VAAIVRTIAWQLNRLRLVRRMLTLVSFAASSSVSLLSAVILSTSWLFLLGLRLHSLALKEITGSIHVAVCFLFPYCFQYLVSAIDEWAPHWLPACLWYSFLMQMFCTSNHQYKHSMSSHLVPALRALLPVAFLCEVPSGRSYLLALGGSELLLLSFTLAAVRLRCIFSPIFLLSWS------------CQVFALATCGSSASLQYGQVLVSLASLHAVSMVDVMLNSRFYHARYRAGMSLTNGFRTV 715
BLAST of mRNA_H-paniculata_contig188.4671.1 vs. uniprot
Match: A0A7S2Y1S5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S5_9STRA) HSP 1 Score: 136 bits (342), Expect = 5.350e-31 Identity = 87/240 (36.25%), Postives = 118/240 (49.17%), Query Frame = 3
Query: 2025 LLMGLRVHSLALKEATGSIHVAVCFLFPYFFQYFVSMVDQWAPHWLPACLWYSFLMQMSCTSNHLCQHSIPSH-------------------------------------------LVPALRALLPVAFLCEVPSGRSYLLALGGSELLLLSFTLAAIRLRCLFSPVFLLSWSFVHHILPLRPTTAQVFAIATFGSSSGLQYCQLLISLASLHTVSMVDIMLNSRFYHARYRAGMSLTSG 2615
LL+ + +H AL+EA H+A CF FPY F+Y V + WAPHW P CLWYSFL+Q+ C + S L P R LLP+ + E SG S++L L GSELLLLSF LAA+R+RCL SP+FL++W PL ++ A++ FG LQYCQLL +L +L+ VS VD +L+ ++ G + G
Sbjct: 98 LLVVVHLHKCALREALARPHIAFCFAFPYVFRYLVGALADWAPHWAPVCLWYSFLVQLFCHRQPRNPQAPLSQQXXXXXXXXXXXXXXXXXXSPDSQLEPVNGGGDDASPPEPSVTLQPIFRLLLPLLLIAEGASGHSFVLDLDGSELLLLSFFLAAVRMRCLTSPIFLVAW-------PL-----EILAVSAFGPLPVLQYCQLLFALTALYGVSAVDHLLHGGGSPGGHKGGYAYAKG 325
BLAST of mRNA_H-paniculata_contig188.4671.1 vs. uniprot
Match: A0A7S2FCH2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FCH2_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.580e-29 Identity = 84/234 (35.90%), Postives = 125/234 (53.42%), Query Frame = 3
Query: 1956 LMSFAASSTVAMLSMVITTASWLLLMGLRVHSLALKEATGSIHVAVCFLFPYFFQYFVSMVDQWAPHWLPACLWYSFLMQMSCTSNHLCQHS---------------------------------IPSH-----LVPALRALLPVAFLCEVPSGRSYLLALGGSELLLLSFTLAAIRLRCLFSPVFLLSWSFVHHILPLRPTTAQVFAIATFGSSSGLQYCQLLISLASLHTVS 2543
++S S V ++ +V+ + LM L++H A++EA + +VA CF+FP+ FQ+ VS+V +WAPHW P CLWYSFL+Q+ CT S +PS +V R +LP+AF+ E SGR+ LL L G+ELL++SF LAA++++C+ SP+F++SW+ QV A A G LQYCQ +++L SLH S
Sbjct: 332 ILSHVVSFLVCLVGLVLAFMLAIFLMILQLHKYAVREALSNYNVAFCFVFPFNFQFLVSLVKEWAPHWAPVCLWYSFLIQLLCTRGKSSAPSTAGSDVTVGNTASGGMSSQANGTTTNATGGGGAVPSRGTSGGMVSVFRIVLPLAFVAEGVSGRTALLDLNGAELLVVSFLLAAVKMQCISSPIFMVSWAI------------QVLATAATGFHPVLQYCQFVLALTSLHICS 553
BLAST of mRNA_H-paniculata_contig188.4671.1 vs. uniprot
Match: A0A7S2B5U5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5U5_9STRA) HSP 1 Score: 135 bits (341), Expect = 8.500e-29 Identity = 84/234 (35.90%), Postives = 125/234 (53.42%), Query Frame = 3
Query: 1956 LMSFAASSTVAMLSMVITTASWLLLMGLRVHSLALKEATGSIHVAVCFLFPYFFQYFVSMVDQWAPHWLPACLWYSFLMQMSCTSNHLCQHS---------------------------------IPSH-----LVPALRALLPVAFLCEVPSGRSYLLALGGSELLLLSFTLAAIRLRCLFSPVFLLSWSFVHHILPLRPTTAQVFAIATFGSSSGLQYCQLLISLASLHTVS 2543
++S S V ++ +V+ + LM L++H A++EA + +VA CF+FP+ FQ+ VS+V +WAPHW P CLWYSFL+Q+ CT S +PS +V R +LP+AF+ E SGR+ LL L G+ELL++SF LAA++++C+ SP+F++SW+ QV A A G LQYCQ +++L SLH S
Sbjct: 664 ILSHVVSFLVCLVGLVLAFMLAIFLMILQLHKYAVREALSNYNVAFCFVFPFNFQFLVSLVKEWAPHWAPVCLWYSFLIQLLCTRGKSSAPSTAGSDVTVGNTASGGMSSQANGTTTNATGGGGAVPSRGTSGGMVSVFRIVLPLAFVAEGVSGRTALLDLNGAELLVVSFLLAAVKMQCISSPIFMVSWAI------------QVLATAATGFHPVLQYCQFVLALTSLHICS 885
BLAST of mRNA_H-paniculata_contig188.4671.1 vs. uniprot
Match: A0A484E345_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E345_BRELC) HSP 1 Score: 98.6 bits (244), Expect = 3.870e-17 Identity = 61/177 (34.46%), Postives = 92/177 (51.98%), Query Frame = 3
Query: 2037 LRVHSLALKEATGSIHVAVCFLFPYFFQYFVSMVDQWAPHWLPACLWYSFLMQMSCTSNHLCQHSIPSHLVPALRALLPVAFLCEVPSGRSYLLALGGSELLLLSFTLAAIRLRCLFSPVFLLSWSFVHHILPLRPT-----TAQVFAIATFGSSSGLQYCQLLISLASLHTVSMVD 2552
+R+H +A H+ +CF Y + + V WAP W+P CLWY+FL+Q+ CT+ P+ +V A R LLP+ FL + + S+LL L GSELLL+SF + A++ R + +F LS + PL T Q G +Q+ QL ++L SLH ++ D
Sbjct: 866 IRIHRVAFHATMTHRHIGICFAIVYGYPLLIQYVFSWAPPWVPVCLWYAFLVQLFCTNG-------PTAMVTASRVLLPLVFLIKGLAHHSFLLDLNGSELLLISFIVLALKTRKFCNLIFFLSLA----TQPLGHTFFNTQLGQCLLAVCLGPELLVQWLQLTLALYSLHAMAATD 1031 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig188.4671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig188.4671.1 >prot_H-paniculata_contig188.4671.1 ID=prot_H-paniculata_contig188.4671.1|Name=mRNA_H-paniculata_contig188.4671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=849bp MDEQRASEDDDVDVDHYFLPGGILDTLSQREEDMIGGSLLDEIGGVGNVLback to top mRNA from alignment at H-paniculata_contig188:4..10500- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig188.4671.1 ID=mRNA_H-paniculata_contig188.4671.1|Name=mRNA_H-paniculata_contig188.4671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10497bp|location=Sequence derived from alignment at H-paniculata_contig188:4..10500- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig188:4..10500- >mRNA_H-paniculata_contig188.4671.1 ID=mRNA_H-paniculata_contig188.4671.1|Name=mRNA_H-paniculata_contig188.4671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5094bp|location=Sequence derived from alignment at H-paniculata_contig188:4..10500- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |