mRNA_H-paniculata_contig18790.4670.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.690e-32 Identity = 71/193 (36.79%), Postives = 113/193 (58.55%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
I + ++ K E G +V K R VARG QI + + +SS P AA+ K ++ AT + +L H D +QAYI A +++EI++ PE + G V ++++A+YGL+Q+GR ++ L G+EQ DPC+F K+VDGE V IV+Y+DD+L++ + + L L + +KG+GE + GC I
Sbjct: 147 IGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EGLFASLNKNFPVKGMGECTWVDGCAI 338
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.090e-31 Identity = 72/193 (37.31%), Postives = 111/193 (57.51%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
I + ++ K E G +V K R VARG QI + + +SS P+AA+ K ++ AT + +L H D +QAYI A + +EI++ PE G V ++++A+YGL+Q GR + L G+EQ DPC+F K+VDGE V IV+Y+DD+L++ + +EL L + +K LGE ++ GC I
Sbjct: 545 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKKFPVKDLGECTWYDGCAI 736
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 4.190e-31 Identity = 72/193 (37.31%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
I + ++ K E G +V K R VARG QI + + +SS P+AA+ K ++ AT + +L H D +QAYI A + +EI++ PE G V ++++A+YGL+Q+GR + L G+EQ DPC+F K+VDGE V IV+Y+DD+L++ + +EL L + +K LGE ++ GC I
Sbjct: 404 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGER-EELFASLNKKFPVKDLGECTWYDGCAI 595
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 128 bits (321), Expect = 8.650e-31 Identity = 70/193 (36.27%), Postives = 112/193 (58.03%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
I + ++ K E G +V K R VARG QI + + +SS P+AA+ K ++ AT + +L H D +QAYI A + +EI++ PE G V ++++A+YGL+Q+GR + L G+EQ DPC+F K+VDGE V IV+Y+DD++++ + +EL L + +K +GE ++ GC I
Sbjct: 258 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGER-EELFASLNKKFPVKDVGECTWYDGCAI 449
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.640e-30 Identity = 71/184 (38.59%), Postives = 108/184 (58.70%), Query Frame = 1
Query: 46 KITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
K +E G +V K R VARG QI + + +SS P+AA+ K ++AAT + +L H D +QAYI A + +EI++ PE G V +++ A+YGL+Q+GR + L G+EQ DPC+F K+VDGE V IV+Y+DD+L++ + +EL + +K LGE ++ GC I
Sbjct: 162 KTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVEHALYGLKQSGREWGFEAADALIENGYEQCGVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASPNKKFPMKDLGECTWYDGCAI 344
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 124 bits (310), Expect = 3.650e-30 Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 1
Query: 91 VARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
VARG QI + +R +SS P+AA+ K ++ AT + +L H D +QAYI A + +EI++ PE G V ++++A+YGL+Q+GR + L G+EQ DPC+F K+VDGE V IV+Y+DD+L++ + +EL L + +K LGE ++ GC I
Sbjct: 2 VARGFSQIPGIDFRHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDR-EELFASLNKKFPVKDLGECTWYDGCAI 169
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE) HSP 1 Score: 126 bits (316), Expect = 4.530e-30 Identity = 71/193 (36.79%), Postives = 111/193 (57.51%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
I + ++ K E G +V K R VARG QI + + +SS P+AA+ K ++ AT + +L H D +QAYI A + +EI++ PE G V ++++A+YGL+Q+GR + L G+EQ DPC+F K+VDGE V IV+Y+DD++++ + +EL L + +K LGE + GC I
Sbjct: 310 IGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIVAADEG-EPEELFASLNKKFPVKDLGECTCYDGCAI 501
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE) HSP 1 Score: 124 bits (312), Expect = 4.890e-30 Identity = 69/191 (36.13%), Postives = 111/191 (58.12%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGC 591
I + ++ K E G +V K R VARG +I + + +SS P+AA+ K ++ AT + +L H D +QAYI A +++EI++ PE G V ++++A+YG +Q+GR + L G+EQ DPC+F K+VDGE V IV+Y+DD+L++ + +EL L + +K LGE ++ GC
Sbjct: 61 IGSKWVFSWKTNEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKKVPVKDLGECTWYDGC 250
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 124 bits (312), Expect = 5.030e-30 Identity = 69/193 (35.75%), Postives = 109/193 (56.48%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
I + ++ K E G +V K R +ARG QI + + + S P+AA+ K ++ AT +L H D +QAYI A + +E + PE Y G V ++++A+YGL+Q+GR + L G+EQ DPC+F K+VDGE V+ IV+Y+DD+L+ + +EL L + ++ LGE ++ GC I
Sbjct: 27 IGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIENGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEGER-EELFASLNKKFPVESLGEYTWYDGCAI 218
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE) HSP 1 Score: 124 bits (310), Expect = 5.540e-30 Identity = 69/193 (35.75%), Postives = 110/193 (56.99%), Query Frame = 1
Query: 19 ISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAATTKMKLSAATVQDWELRHVDFEQAYIQAPIDQEIFIGIPEEYWEFPGAVRRLDKAIYGLEQAGRC*HMKITYDLKARGFEQSHADPCLFCKIVDGEAVAAIVVYMDDLLISTKGSTKMDELLVDLAEGNKLKGLGEVKYHLGCHI 597
I + ++ K E G +V K R VARG Q + + +SS P+AA+ K ++ AT + +L H D +QA+I A + +EI++ PE G ++++A+YGL+Q+GR + L G+EQ ADPC+F K+VDGE V IV+Y+DD+L++ + +EL + +K LGE ++ GC I
Sbjct: 235 IGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFPEGCGSMFGKAVKVERALYGLKQSGREWGFEAADALIENGYEQCRADPCVFRKLVDGEVVGLIVIYVDDILVAADEGER-EELFASFNKNFPVKNLGECAWYDGCAI 426 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18790.4670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18790.4670.1 >prot_H-paniculata_contig18790.4670.1 ID=prot_H-paniculata_contig18790.4670.1|Name=mRNA_H-paniculata_contig18790.4670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp MIISTMMLYKRKITEDGNVVKHKRRFVARGNRQIKNLHYREASSLAPAAAback to top mRNA from alignment at H-paniculata_contig18790:4175..4771- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18790.4670.1 ID=mRNA_H-paniculata_contig18790.4670.1|Name=mRNA_H-paniculata_contig18790.4670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig18790:4175..4771- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18790:4175..4771- >mRNA_H-paniculata_contig18790.4670.1 ID=mRNA_H-paniculata_contig18790.4670.1|Name=mRNA_H-paniculata_contig18790.4670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig18790:4175..4771- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |