mRNA_H-paniculata_contig1879.4668.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A6H5KYC8_9PHAE (RNase III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYC8_9PHAE) HSP 1 Score: 419 bits (1077), Expect = 7.280e-133 Identity = 244/417 (58.51%), Postives = 286/417 (68.59%), Query Frame = 1
Query: 337 VEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGTKILADCFEAVLGAVYVDAGDCTDLAEIHRILSRVIPSYEFERRPHPTRPQSLHSQPAPQHPPSRHPISSGHFPLPSPPPHAVAQEQRKVRGEEPRKIMNLAHRVIQIAKNSNGEEAGVRGTEHQGASAHLPS--------NGVQPDRHEVLRELDGRLRDFQQIILRGGALSYSTAACAEAFGEEVAWFYARTAT-TPRQCVLLDSVLAEESMLKKEFSEAPPGAELVVMEVVIVPAELRLQCFTVVEYLLVNILRQD----VPSHQQAVRLFKSTPHGIETLKLLEIIINESASSLLFTTRQRSVISARLA 1548
VE +LGYRFGD+RLLLTALTHRSFCNE +T +GDFDELEWLGDSVLQLAVSSWLFR+A+GSRRSSG LS TR RFVD+ ACESFA++L L P+LRIGHGQPV GTKILADCFEAVLGAVYVDAG C+DL IH IL+RVIPSY+ +RR L P HP RHP S H + PPP A E PRK+MNLAHR+ QIAK G G Q P+ NG D EV+RE DGRLRDFQ +LRGGALS+S+ A A AFGE+ A F++ AT P +C LLDSVL SML+K F APPGAE VVMEVV+VP+ELRLQ FTVVE+LL N+L+ P+ +RL +S PHG T+ L I+ E+A++LL QR+ ISA +A
Sbjct: 17 VEHALGYRFGDRRLLLTALTHRSFCNETHTASGDFDELEWLGDSVLQLAVSSWLFRSAKGSRRSSGQLSATRQRFVDSHACESFARQLNLLPYLRIGHGQPVGGTKILADCFEAVLGAVYVDAGGCSDLEPIHAILARVIPSYKHDRR--------LQVPRQPPHP--RHPHSHPHGAM-EPPPGPPA--------EGPRKLMNLAHRLTQIAKRDADRVEGGGGRAAQPMQGDAPASPPLSRAANGSDRDPLEVVREFDGRLRDFQGNVLRGGALSFSSRAFAGAFGEDEARFFSAVATGCPERCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLSSIVTETATNLLLNAHQRATISAGVA 414
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A835Z0E4_9STRA (RNase III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E4_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.080e-30 Identity = 78/153 (50.98%), Postives = 99/153 (64.71%), Query Frame = 1
Query: 334 AVEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGT--KILADCFEAVLGAVYVDAGDCTDLAE---IHRILSRVIPSYEFER 777
A E +L Y F +K LLL ALTHRS+CNEN T TGD D LEWLGDSVLQ A+S WL+ + + RS L+ R +FVD AC +A +L L +R GHGQ GT K+ ADCFEAVLGA+Y+D+ + A I R+L+ VIP++ R
Sbjct: 394 AAEAALRYTFSNKLLLLQALTHRSYCNENRTATGDNDALEWLGDSVLQHAISDWLYNSF--AERSVHKLTDLRQQFVDTTACADYASRLGLPDMMRTGHGQATRGTNTKVSADCFEAVLGAMYLDSRSMSPDAPFVPIFRVLADVIPAFTGAR 544
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A835ZIJ8_9STRA (RNase III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ8_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.280e-24 Identity = 74/177 (41.81%), Postives = 103/177 (58.19%), Query Frame = 1
Query: 262 SMASSVVDVGNGLIL------DEQCIQGIW-AVEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGT--KILADCFEAVLGAVYVDAGDCTDLA---EIHRILSRVI 756
S ASS++ + + + DE+ +Q + A EE+LGY F D+ LLL ALT +S+ NE + TGD +EWLGD VLQ AVS WL+ + + R G ++ R +VD AC +A+ L L LR G G + T K+ AD FEAVLGAV++D D A + RIL++VI
Sbjct: 35 STASSIIGIATTIGMLRAPSADEEGLQSLVPAAEEALGYEFLDQMLLLQALTLKSYVNEVESATGDNGAMEWLGDCVLQHAVSDWLYTSTAATHRQEGRMTERRKAYVDTTACARYAQCLGLPRLLRTGAGASASLTSRKVQADAFEAVLGAVHLDCRDAAAAAVPSPVVRILAKVI 211
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: UPI0006802D7F (ribonuclease III n=3 Tax=Anaeromassilibacillus TaxID=1924093 RepID=UPI0006802D7F) HSP 1 Score: 105 bits (262), Expect = 8.360e-22 Identity = 63/151 (41.72%), Postives = 89/151 (58.94%), Query Frame = 1
Query: 340 EESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAG----TKILADCFEAVLGAVYVDAGDCTDLAEIHRILSR-VIPSYEFER 777
EE LGY F +K+LLLTALTH SF NE + LE+LGDSVL V+ +LF+ + G+L+ R V AC FAK++ L F+R+ HG+ +G + ILAD FEAV+ A+Y+DAG + E + + R V+P + +R
Sbjct: 8 EEKLGYHFKNKQLLLTALTHSSFANEAKGKEQSNERLEFLGDSVLGFVVADYLFKN--NTEMPEGDLTKNRAALVCEKACCGFAKQIDLGKFMRLSHGEQNSGGRTRSSILADAFEAVIAAIYMDAG----MEEARKFILRFVLPMLKTQR 152
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: UPI001A9A005C (ribonuclease III n=1 Tax=Comamonas denitrificans TaxID=117506 RepID=UPI001A9A005C) HSP 1 Score: 104 bits (259), Expect = 2.150e-21 Identity = 63/144 (43.75%), Postives = 86/144 (59.72%), Query Frame = 1
Query: 334 AVEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGTK----ILADCFEAVLGAVYVDAGDCTDLAEIHRILSRV 753
A+++ LGYRF D RLL ALTHRSF +++N + LE+LGDSVL LA+SSWL+ S G+LS R V G+ A L L LR+G G+ +G K ILAD EA+LGAVY++AG +H++ ++V
Sbjct: 7 ALQQRLGYRFQDTRLLQRALTHRSFSSDHN------ERLEFLGDSVLGLAISSWLYHKLADS--PEGDLSRARANLVKEGSLYQLALGLGLPELLRLGEGEARSGGKRRPSILADAVEAILGAVYLEAGFPVAEQVVHQLFAKV 142
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A7V0U1E3_9PROT (Ribonuclease 3 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7V0U1E3_9PROT) HSP 1 Score: 104 bits (259), Expect = 2.790e-21 Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 328 IWAVEESLGYRFGDKRLLLTALTHRSFCNENNTGTG-----DFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGTK----ILADCFEAVLGAVYVDAGDCTDLAEIHRILSRVIPSYEFERR 780
I +E LGY F LLL ALTHRS+ NE G G D++ LE+LGD+VL+L VS L+R QG S G LS TR R V+A A FA +L L FLR+G G+ G + +LAD FEA+L A+Y+D G+ + + R++ + E + +
Sbjct: 10 ITGLESILGYVFQRPELLLQALTHRSYLNETR-GEGCIHELDYERLEFLGDAVLELKVSEILYRRFQGE--SEGGLSRTRARIVNAKALAQFADELCLGDFLRLGRGEERQGGRCRPSLLADVFEALLAALYLDGGNAVLESLVQRLVDLSLTETEVDSK 166
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A7C2EN65_9FIRM (Ribonuclease 3 n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2EN65_9FIRM) HSP 1 Score: 103 bits (258), Expect = 4.880e-21 Identity = 61/139 (43.88%), Postives = 85/139 (61.15%), Query Frame = 1
Query: 304 LDEQCIQGIWAVEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGTK----ILADCFEAVLGAVYVDAG 708
L+E+ Q + A++++LG RF D+ +L AL H SF +E GT ++ LE+LGD+VL L VS +LFR Q RS G L+ R R V A ++L+L +L +G G+ G + +LAD EAVLGAVYVDAG
Sbjct: 13 LEERLAQ-LDALQQALGVRFRDRGVLEVALRHDSFAHERGAGTEHYERLEFLGDAVLNLVVSDYLFR--QYPERSEGELAKERARLVSEAALAHLGRRLRLGSYLLLGRGEERGGGRERPGLLADAVEAVLGAVYVDAG 148
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A2A4YKH6_9BACT (Ribonuclease 3 n=1 Tax=Candidatus Aerophobetes bacterium TaxID=2030807 RepID=A0A2A4YKH6_9BACT) HSP 1 Score: 103 bits (256), Expect = 6.070e-21 Identity = 57/129 (44.19%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 337 VEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDE-LEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGTK----ILADCFEAVLGAVYVDAG 708
+E+ LGY F DK LL A THRSF NEN + + +E LE+LGD++L L VS +L++T S+ G+LS R V+A +C F + +++ FL +G G+ + K ILAD FEAV+GA+Y+D+G
Sbjct: 11 IEKKLGYTFKDKGLLKLAFTHRSFVNENKEISSNHNERLEFLGDAILGLMVSEFLYKTLPESKE--GDLSFLRANLVEASSCYQFLQMIEISEFLLMGKGEMMNQGKGRDTILADLFEAVIGAIYIDSG 137
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A0U5ETR8_9BACT (Ribonuclease 3 n=1 Tax=Candidatus Protochlamydia naegleriophila TaxID=389348 RepID=A0A0U5ETR8_9BACT) HSP 1 Score: 101 bits (251), Expect = 3.220e-20 Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 310 EQCIQGIWAVEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGTK----ILADCFEAVLGAVYVDAG 708
EQ IQ A+E LGY F D LL A HRSF NEN T + LE+LGDSVL + +S +L+R + G LS R R V+A +C ++ + L + +L +G G+ + + ILAD FEA++GA+Y+D G
Sbjct: 5 EQLIQHASAIEAKLGYAFKDHSLLALAFVHRSFINENRDITQHNERLEFLGDSVLGMLISDYLYRHLPST--PEGQLSYLRSRLVEASSCVNYIQALNIGNYLLLGKGERMNDGRGRESILADLFEAIIGAIYLDGG 139
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Match: A0A5C8CQS4_9BURK (Ribonuclease 3 n=1 Tax=Alicycliphilus sp. TaxID=1872437 RepID=A0A5C8CQS4_9BURK) HSP 1 Score: 100 bits (250), Expect = 3.380e-20 Identity = 64/144 (44.44%), Postives = 84/144 (58.33%), Query Frame = 1
Query: 334 AVEESLGYRFGDKRLLLTALTHRSFCNENNTGTGDFDELEWLGDSVLQLAVSSWLFRTAQGSRRSSGNLSLTRVRFVDAGACESFAKKLKLHPFLRIGHGQPVAGTK----ILADCFEAVLGAVYVDAGDCTDLAEIHRILSRV 753
A++ L +RF D LL A+THRS+ +E+N + LE+LGDSVL LAVSS LFR QG G LS R V + A +L+L LR+G G+ +G K ILAD EA++GAVY+DAG A +HR+L V
Sbjct: 8 ALQHRLQHRFSDPSLLQRAVTHRSYSSEHN------ERLEFLGDSVLNLAVSSLLFRRMQGL--PEGELSRVRALLVKQDSLHRIAMRLQLPQVLRLGEGESKSGGKLRPSILADALEAIIGAVYLDAGYDQAEALVHRLLEGV 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1879.4668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1879.4668.1 >prot_H-paniculata_contig1879.4668.1 ID=prot_H-paniculata_contig1879.4668.1|Name=mRNA_H-paniculata_contig1879.4668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=506bp MASSVVDVGNGLILDEQCIQGIWAVEESLGYRFGDKRLLLTALTHRSFCNback to top mRNA from alignment at H-paniculata_contig1879:4959..13085+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1879.4668.1 ID=mRNA_H-paniculata_contig1879.4668.1|Name=mRNA_H-paniculata_contig1879.4668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8127bp|location=Sequence derived from alignment at H-paniculata_contig1879:4959..13085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1879:4959..13085+ >mRNA_H-paniculata_contig1879.4668.1 ID=mRNA_H-paniculata_contig1879.4668.1|Name=mRNA_H-paniculata_contig1879.4668.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3036bp|location=Sequence derived from alignment at H-paniculata_contig1879:4959..13085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |