prot_H-paniculata_contig1878.4664.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1878.4664.1
Unique Name	prot_H-paniculata_contig1878.4664.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	429

Homology

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 4.310e-100
Identity = 191/330 (57.88%), Postives = 234/330 (70.91%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLG-RRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVPDALSMEAAPG-----VRRSPGAGSXXXXXXXXXD----------------SSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRR 359
            MT+ EEI++  EV+ L+ YL +RE LE  LG R  TR+EWAASL IS EEL+ Q+  S RAQERIV +NVGL+V+MARRHHP   A  G    D+IQEGS+A+LRAAETFDP +G RF+TYAGWWVRD V RCV++QAR+IRLPQ+VHNF RTA+ ++  L +ELGR PT  E+A+ M VDV RV    N PDA S++ AP      VR   G    XXXXXXXX                 ++  AGYRHE VAC  + PEQRAE+ LF+SKL++L+SVLS DERLVV LRYGL GA PTT  E+A  AG++K+RV+ VE+RALNKLRR
Sbjct:  180 MTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQERIVGANVGLIVVMARRHHPATMAR-GTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMRVDVERVTRLMNCPDAFSLDDAPPPSARIVRDRIGLSGGXXXXXXXXXXXXXXXXXXXXXXXXKAAPGAGYRHERVACSMVNPEQRAEVGLFESKLDKLLSVLSEDERLVVKLRYGLGGASPTTWGEVAARAGSTKHRVRMVETRALNKLRR 508

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.070e-66
Identity = 123/201 (61.19%), Postives = 152/201 (75.62%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLG-RRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVPDALSMEAAP 251
            MT+ EEI++  EV+ L+ YL +RE LE  LG R  TR+EWAASL IS EEL+ Q+  S RAQERIVE+NVGL+V+MARRHHP   A  G    D+IQEGS+A+LRAAETFDP +G RF+TYAGWWVRD V RCV++QAR+IRLPQ+VHNF RTA+ ++  L +ELGR PT  E+A+ M VDV RV    N PDA S++ AP
Sbjct:  178 MTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQERIVEANVGLIVVMARRHHPATMAR-GTITSDVIQEGSLAVLRAAETFDPRLGYRFSTYAGWWVRDRVTRCVTQQARIIRLPQYVHNFRRTASMTEAALLKELGRRPTYDEIAERMEVDVERVTRLMNCPDAFSLDDAP 377

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.910e-50
Identity = 106/313 (33.87%), Postives = 181/313 (57.83%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVP-DALSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRRPARS 363
            +  EEE+++A +V+ +  +   R+ L+++LGR  T +EWA+S+G+  +EL R++     A++ ++ SN+ LV+ +A+R+  +     G+   D+IQEGS+ L+RA E FDP  G +F+TY+ WW++  + R ++ Q+R IRLP H+H+ + T  K   EL   LGR PT  ELA+ M + + ++R        A+SM+A         + +         DS  D           G  P Q  E  + +  +E+L+  LSP E+ V+ +R+GLD  +P TL E+  +   ++ RV+++E+RAL+KLR+P R+
Sbjct:  173 LRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKR-----GLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKD----------DGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRN 470

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.660e-48
Identity = 116/313 (37.06%), Postives = 192/313 (61.34%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVR-LYSNVPDALSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRRPARS 363
            +T +EE+++A  V+ L  +   RE LE  L R  T  EWAA++G+  ++L RQ+  S RA+  ++ESN+ LV+ +A+R+  +      ++  D+ QEGS+ L++A E FDP  G RF+TYA WW++  V R ++ Q+R IRLP H+H+ + T  K   EL  +LGR+PT  E+A+  G+ V +++ L+ +  + +S E      R  GAG XXXXXXXX    +D+    E +      PE++A + L +  ++ L+  LS  E+ V+ +R+GLD  +  TL E+ +    ++ R++++E+RAL+KLR+P R+
Sbjct:  187 LTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNT---LSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQE---IRVGGAGXXXXXXXXXTVILSDSITDKEHM------PEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRN 487

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: A0A3M2FSV9_9CYAN (RNA polymerase sigma factor, RpoD/SigA family n=9 Tax=Cyanobacteria TaxID=1117 RepID=A0A3M2FSV9_9CYAN)

HSP 1 Score: 175 bits (444), Expect = 7.600e-48
Identity = 112/319 (35.11%), Postives = 175/319 (54.86%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLY-SNVPDALSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRRPARSSGHEHL 369
            +T E+E++   +V+ L+A    RE L   L R  TR EWAA+  ISE EL   +E   RA+ ++VE+N+ LVV +A+++  +      V   D+IQEG++ + R  E FDP  G RF+TYA WW+R  + R ++ + R IRLP H+   +    K+  +L + LGR  T++ELA  + +  ++VR Y       LS++   G  +    G                    E +    I+PE+ A     +S LE LM+ L+P +R V+SLR+GL+  QP TL ++ E+   S+ RV+++E  AL+KLR+  R   HE+L
Sbjct:   21 LTHEQEVIYGKQVQQLTAMNEIREKLAAELNREPTRAEWAAAANISEAELETIIENGERAKRKMVEANLRLVVSVAKKYIKR-----NVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTPAQVREYLERARQPLSLDVRVGDNQDTELG--------------------ELLEDSSISPEEFATQSSLRSDLERLMADLTPQQRHVLSLRFGLENGQPLTLAKVGELLNISRERVRQIEREALSKLRK-RRGDIHEYL 313

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: A0A1Z4RRK4_9CHRO (RNA polymerase sigma factor SigA n=7 Tax=Cyanobacteria TaxID=1117 RepID=A0A1Z4RRK4_9CHRO)

HSP 1 Score: 175 bits (444), Expect = 3.300e-47
Identity = 104/314 (33.12%), Postives = 174/314 (55.41%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVPDA-LSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRRPARSS 364
            +  EEEI +A ++  L      ++ LE+ LGR AT +EWA  + +   +  R++ +  RA++++V+SN+ LVV +A++     + + G++  D+IQEGS+ L+RAAE FD   G +F+TYA WW+R  + R ++ Q+R IRLP H++  I    K+   L +E GR+PT  E+A  M + + ++R  +      +S+E   G       G                    + +   G TPE +    L +  LE ++  LSP ER V+ LRYGLD  +  TL E+ ++   ++ R++++E++AL KLR P R+S
Sbjct:   78 LRAEEEIELARQIADLLELERLKDSLEDGLGREATEEEWAREVDMEYRKFRRRLFIGRRAKDKMVQSNLRLVVSIAKK-----YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEQGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG--------------------DFIEADGETPEDQVSKSLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 366

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: UPI0019F4056F (RNA polymerase sigma factor RpoD n=1 Tax=filamentous cyanobacterium LEGE 07170 TaxID=1828880 RepID=UPI0019F4056F)

HSP 1 Score: 175 bits (444), Expect = 3.550e-47
Identity = 105/314 (33.44%), Postives = 175/314 (55.73%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVPDA-LSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRRPARSS 364
            +  +EEI +A ++  L     + E L E+L R  T  EWA ++G+ E    R++ +  RA++++V+SN+ LVV +A++     + + G++  D+IQEGS+ L+RAAE FD   G +F+TYA WW+R  + R ++ Q+R IRLP H++  I    K+   L +E+GR+PT  E+A  M + + ++R  +      +S+E   G       G                    + +   G TPE +    L +  LE ++S LSP ER V+ LRYGLD  +  TL E+ ++   ++ R++++E++AL KLR P R+S
Sbjct:   81 LRADEEIELARKIADLLELEQTGEKLAEKLDREPTYAEWAEAMGMEETAFRRRLFLGRRAKDKMVQSNLRLVVSIAKK-----YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG--------------------DFIESDGETPEDQVSKSLLREDLETVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 369

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: UPI0019DD4219 (RNA polymerase sigma factor RpoD n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019DD4219)

HSP 1 Score: 174 bits (442), Expect = 6.460e-47
Identity = 105/314 (33.44%), Postives = 176/314 (56.05%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVPDA-LSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRRPARSS 364
            +  EEEI +A ++  L      RE LE+RL +  +  EWAA +G++  +  R++ +  RA++++V+SN+ LVV +A++     + + G++  D+IQEGS+ L+RAAE FD   G +F+TYA WW+R  + R ++ Q+R IRLP H++  I    K+   L +E+GR+PT  E+A  M + + ++R  +      +S+E   G       G                    + +   G TPE +    L +  LE ++  LSP ER V+ LRYGLD  +  TL E+ ++   ++ R++++E++AL KLR P R+S
Sbjct:   78 LRAEEEIELARKIADLLELERIRERLEQRLEKIPSDAEWAAEVGMAIPQFRRRLFLGRRAKDKMVQSNLRLVVSIAKK-----YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG--------------------DFIEADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 366

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: A0A2V3IIW3_9FLOR (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW3_9FLOR)

HSP 1 Score: 174 bits (441), Expect = 6.760e-47
Identity = 123/381 (32.28%), Postives = 194/381 (50.92%), Query Frame = 0

Query:    4 RGRLAVRRATSRLLGKEFEGFTGVSYGKVSRSSRQQRPRLPSTSER------------RGMTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVPDALSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRRPARSSGHEHLLPP 372
            RGR   RRA S  L  +       S  K S  +++     PS S+             R +T EEE+    +VR L  +  +R  L + +GR  +  EWA  + I  +  + Q+  + +A++R++  N+ LVV +A+R     + + G+   D+IQEG++ L+RA E FD   G +F+TYA WWVR  V R ++ Q+R IRLP H+++ I    ++   L  ELGR P   E+A+Y  + V ++R        ++M+AA                     +S DA    + +     +PE R E  L +  LE +++ L+P ER VV +RYGLD  +  TL E+  +   +K RV+++ES+AL KLR P RS+  +   PP
Sbjct:    8 RGRPRTRRARSEPLSSDS------STTKTSNPAKKPASSSPSVSDNTVRWYLQLIGSDRLLTAEEEVEYGRQVRKLMHWQRNRVELADTIGREPSDSEWADFVDIDRQTFATQLVDARKAKDRMIVCNLRLVVSIAKR-----YLNRGMPLSDLIQEGTLGLIRACEKFDAEKGFKFSTYATWWVRQAVTRAIADQSRTIRLPVHLYDTITAIRRATKYLTNELGRPPLEREIAEYCNITVEKLR-----STRINMQAA-------------MPLDCPLTNSDDALTLSDVIESDEESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPP 359

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BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Match: UPI001A0CF0F9 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI001A0CF0F9)

HSP 1 Score: 172 bits (437), Expect = 8.740e-47
Identity = 106/309 (34.30%), Postives = 173/309 (55.99%), Query Frame = 0

Query:   52 MTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEELSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGSMALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNFIRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLY-SNVPDALSMEAAPGVRRSPGAGSXXXXXXXXXDSSADAGYRHETVACGGITPEQRAEMFLFQSKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVESRALNKLRR 359
            +T EEEI +  +V++LS     R  L E+LGR  +++EWAA+ GIS  +L R V+   RA+ +++E+N+ LVV +A+++  +      V   D+IQEG++ + R  E FDP+ G RF+TYA WW+R  + R ++ ++R IRLP H+   +    K+  +L + LGR  TV ELA  + +   +VR Y       LS++   G  +    G                    E +   G+TPE   +    + +++ +M+ L+P +R V+SLRYGL+  QP TL+ + E+   S+ RV+++E  AL KLR+
Sbjct:   24 LTHEEEIRLGRQVQSLSQLQDQRTSLAEQLGREPSQEEWAAAAGISLWDLQRIVQAGERAKRKMIEANLRLVVAVAKKYVKR-----NVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATVGELAAELDLTPRQVRDYLERARQPLSLDVRVGDNQDTELG--------------------ELLEDQGLTPEDFTDQTALRHEIQGVMAELTPQQRRVLSLRYGLEDGQPLTLSRIGELLNISRERVRQIEREALTKLRK 307

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1878.4664.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LLA7_ECTSI	4.310e-100	57.88	RNA polymerase sigma factor n=1 Tax=Ectocarpus sil...	[more]
A0A6H5KNQ9_9PHAE	1.070e-66	61.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2WX55_9STRA	2.910e-50	33.87	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S1B782_9STRA	4.660e-48	37.06	Hypothetical protein n=2 Tax=Corethron hystrix Tax...	[more]
A0A3M2FSV9_9CYAN	7.600e-48	35.11	RNA polymerase sigma factor, RpoD/SigA family n=9 ...	[more]
A0A1Z4RRK4_9CHRO	3.300e-47	33.12	RNA polymerase sigma factor SigA n=7 Tax=Cyanobact...	[more]
UPI0019F4056F	3.550e-47	33.44	RNA polymerase sigma factor RpoD n=1 Tax=filamento...	[more]
UPI0019DD4219	6.460e-47	33.44	RNA polymerase sigma factor RpoD n=1 Tax=Pleurocap...	[more]
A0A2V3IIW3_9FLOR	6.760e-47	32.28	RNA polymerase sigma factor SigA n=1 Tax=Gracilari...	[more]
UPI001A0CF0F9	8.740e-47	34.30	RNA polymerase sigma factor, RpoD/SigA family n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 310..322 score: 40.1 coord: 144..157 score: 50.41 coord: 331..346 score: 32.58 coord: 168..176 score: 62.65 coord: 346..357 score: 38.33
None	No IPR available	GENE3D	1.20.120.1810		coord: 28..189 e-value: 9.5E-27 score: 96.3
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 35..368
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 293..373 e-value: 9.8E-17 score: 62.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 190..239 e-value: 4.0E-10 score: 41.6
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 307..359 e-value: 1.9E-11 score: 43.3
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 210..238 e-value: 5.5E-6 score: 26.4
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 111..359 e-value: 8.0E-25 score: 85.3
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 116..189 e-value: 6.4E-10 score: 38.7
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 279..364
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 189..238
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 43..189

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1878	contig	H-paniculata_contig1878:1883..12482 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1878.4664.1	mRNA_H-paniculata_contig1878.4664.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1878 1487..12493 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1878.4664.1 ID=prot_H-paniculata_contig1878.4664.1|Name=mRNA_H-paniculata_contig1878.4664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=429bp
MGLRGRLAVRRATSRLLGKEFEGFTGVSYGKVSRSSRQQRPRLPSTSERR
GMTVEEEIVMAHEVRTLSAYLWSREFLEERLGRRATRKEWAASLGISEEE
LSRQVEVSHRAQERIVESNVGLVVMMARRHHPKIFADLGVTRDDIIQEGS
MALLRAAETFDPNMGCRFATYAGWWVRDGVQRCVSRQARLIRLPQHVHNF
IRTATKSDVELREELGREPTVHELAKYMGVDVSRVRLYSNVPDALSMEAA
PGVRRSPGAGSGGGGGGAGGDSSADAGYRHETVACGGITPEQRAEMFLFQ
SKLEELMSVLSPDERLVVSLRYGLDGAQPTTLTELAEMAGASKYRVQRVE
SRALNKLRRPARSSGHEHLLPPTIVADGDSGGNGDDGKWIGYGVEHGDTS
LLDEYGEQEVAATGQSLAENDQGRERRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000943	RNA_pol_sigma70
IPR036388	WH-like_DNA-bd_sf
IPR007630	RNA_pol_sigma70_r4
IPR007624	RNA_pol_sigma70_r3
IPR014284	RNA_pol_sigma-70_dom
IPR007627	RNA_pol_sigma70_r2
IPR013324	RNA_pol_sigma_r3/r4-like
IPR013325	RNA_pol_sigma_r2