mRNA_H-paniculata_contig1877.4661.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1877.4661.1
Unique NamemRNA_H-paniculata_contig1877.4661.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1877.4661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1877contigH-paniculata_contig1877:4053..5894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size470
Cds size324
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1877.4661.1prot_H-paniculata_contig1877.4661.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1877 4198..5894 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.2486472-UTR-H-paniculata_contig1877:4052..41971622929445.2486472-UTR-H-paniculata_contig1877:4052..4197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1877 4053..4197 -
1691480864.2744582-UTR-H-paniculata_contig1877:4052..41971691480864.2744582-UTR-H-paniculata_contig1877:4052..4197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1877 4053..4197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.2658198-CDS-H-paniculata_contig1877:4197..44131622929445.2658198-CDS-H-paniculata_contig1877:4197..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1877 4198..4413 -
1691480864.2856278-CDS-H-paniculata_contig1877:4197..44131691480864.2856278-CDS-H-paniculata_contig1877:4197..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1877 4198..4413 -
1622929445.2861266-CDS-H-paniculata_contig1877:5786..58941622929445.2861266-CDS-H-paniculata_contig1877:5786..5894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1877 5787..5894 -
1691480864.2929626-CDS-H-paniculata_contig1877:5786..58941691480864.2929626-CDS-H-paniculata_contig1877:5786..5894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1877 5787..5894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1877.4661.1

>prot_H-paniculata_contig1877.4661.1 ID=prot_H-paniculata_contig1877.4661.1|Name=mRNA_H-paniculata_contig1877.4661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
GGKDGRSHGLDDGRGKPGDVVVQANDGAAAERPSDKRNPSSEEDAPTTPP
PSDGNAAADGGMHNQILSTELLSALTSPRCPPALAEAFADGNSLSLRIPA
PDRWWGV*
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mRNA from alignment at H-paniculata_contig1877:4053..5894-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1877.4661.1 ID=mRNA_H-paniculata_contig1877.4661.1|Name=mRNA_H-paniculata_contig1877.4661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig1877:4053..5894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAAAGATGGTCGTAGTCACGGGCTAGACGATGGAAGAGGGAAACC
TGGGGACGTGGTGGTCCAAGCGAATGATGGTGCGGCGGCTGAACGTCCCT
CAGATAAGGTGTGTACTGCGGCGCAATGCGCGTTACGTGTGTATATAAGT
AAGTGTATTATGTGTGAGTGATCGTTGCTTCGAGAGCTTTGTCGTTAATC
GTCGCTATGGAAGCGTATATGCGGATGTTTCTGTGCAAAGTCAGAGCGAT
TTTTACAAAAGTTGCCAAGTCTTTTATATTGGATGTTTGTAAACTCGGTT
TTTTGTCACATAGTGGTAAGACCAAGTACTTTTCTATAACCATGTTATCA
AAACTCGTTTGAAATTTGGGCCCAAACTTGGACCCAATCGCTCATTTCCC
GTCAGGATTCCTCGTGCAGATCGAATGGGAGTATTTAGACGTTGGGCTCA
AGTTTTCAATCTCTCAACTGTGCGTTTTCATAACGTGATTGTTGAAAATA
CTTGGTGATACTCTACAAGTTGGGCCCTCCAAGAGAGACCAAAAACATTC
CACGGGCGTTTCTCACTTGGTTTTCTGGAGTTTGGAGCTGAAATTTTGAG
GGTAGGTGCGCATCAAAATTTCGGAGGCCTCTATTGTTAATACCTTTTTT
TTTTTAATGTTCCGAAAACAATGGCTCCTGAATAATTTTAGGGTTCAAAG
ATCCGTATTTTTCTTAGGAACAAAAAGAAAAGTCAAAATGGAACAATCAA
TAGAGGCCTCCCTAAAATTTTGATGCACACCTGCCGTCAAAATTTCAGCC
CCCAACACCAAAATAACAAGTAAAGAAGTGCCCGTTTTGTACAAGTGTTA
CGTACGTCCTAATCCCATACAAAAATGCAAATATTATACCCCAGTTTTGC
TTCAGCCTAACTTTGGAACGGTGGGGAGTTGGTAACCCAAACCGGTATCA
CGGTTCTCGTCGTGGTGTCAGCAATTTGCACACCAATTTTGAGAACAGTG
GGGTATGACTCGGGCACATATGTAACATATTTGACTTTTGTATGAGTACG
TTTGGAAAATAGCCGCCGACAGTCCATATTTCGTATTGTCGTATACTTTG
AAACGCTGAACGTACCCCCGATGGCCGATCAAAGCGCGCGGCGTACTCCG
TGGTGCTTACACGGTTGCAGGCCGTCCCACGTTTGTGGCAGTTTTCGCTT
TGGATCATGGCATTTGGCCTGCGGAACGCTTTGGATATTCTTCTATGGGC
CCAGCTTGTATGTGACAAAAATCGAGTTTCCGACGTCCGTAAGAAATGAC
TTAATTGCACCTTTTTCTTCGTTCAATTGACCTCTATTTCGTGCTTCTCT
CTTTTGGTCATGATGTGTTTGTATCGTCTCTGTTTGCCATTTTCGCGCAT
GAACTCTCCAGTCACTCAATTGCAATTGTGTTGTACGTCTCTCTCTCTCT
CTCTCTCTCTCTCGTCCGCCATATTTTTCAGCGCAACCCATCATCGGAAG
AAGATGCACCCACGACGCCTCCTCCTAGCGATGGCAACGCCGCTGCCGAC
GGAGGAATGCACAACCAAATCTTGTCCACTGAACTATTGTCAGCGCTAAC
CTCACCGCGGTGCCCACCGGCCTTGGCTGAAGCTTTTGCTGATGGTAATT
CCCTTTCGCTGAGGATTCCGGCCCCGGACAGGTGGTGGGGAGTTTGAAGA
TTTGGTGACCACATCGGCTGAGGAAGTGATGTCATTCATCTGGGTATTAT
TGGTTTTTGACCCATTATTACTTATTCTTGTTTGTGTGTCACTTGACGGT
GTCAATGAGCGTATGTGTCCCTGTGCGTGTGCCTATGGAGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig1877:4053..5894-

>mRNA_H-paniculata_contig1877.4661.1 ID=mRNA_H-paniculata_contig1877.4661.1|Name=mRNA_H-paniculata_contig1877.4661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig1877:4053..5894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAAAGATGGTCGTAGTCACGGGCTAGACGATGGAAGAGGGAAACC
TGGGGACGTGGTGGTCCAAGCGAATGATGGTGCGGCGGCTGAACGTCCCT
CAGATAAGGGAGGGAAAGATGGTCGTAGTCACGGGCTAGACGATGGAAGA
GGGAAACCTGGGGACGTGGTGGTCCAAGCGAATGATGGTGCGGCGGCTGA
ACGTCCCTCAGATAAGCGCAACCCATCATCGGAAGAAGATGCACCCACGA
CGCCTCCTCCTAGCGATGGCAACGCCGCTGCCGACGGAGGAATGCACAAC
CAAATCTTGTCCACTGAACTATTGTCAGCGCTAACCTCACCGCGGTGCCC
ACCGGCCTTGGCTGAAGCTTTTGCTGATGGTAATTCCCTTTCGCTGAGGA
TTCCGGCCCCGGACAGGTGGTGGGGAGTTTGACGCAACCCATCATCGGAA
GAAGATGCACCCACGACGCCTCCTCCTAGCGATGGCAACGCCGCTGCCGA
CGGAGGAATGCACAACCAAATCTTGTCCACTGAACTATTGTCAGCGCTAA
CCTCACCGCGGTGCCCACCGGCCTTGGCTGAAGCTTTTGCTGATGGTAAT
TCCCTTTCGCTGAGGATTCCGGCCCCGGACAGGTGGTGGGGAGTTTGA
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