prot_H-paniculata_contig18755.4657.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18755.4657.1
Unique Nameprot_H-paniculata_contig18755.4657.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length106
Homology
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.790e-20
Identity = 54/104 (51.92%), Postives = 63/104 (60.58%), Query Frame = 0
Query:    3 GRGGGGILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTGKMDIHLDHDXXXXXXXEAGGGVARPGAMPT 106
            G GGG  L  W D+SG AKVL+ GREG+NRSMHGDTVAV LLP++ WR PTDRKRLT   +E+             DI L+         +  GG A PGAMPT
Sbjct:  314 GAGGGAALDGWTDASGRAKVLVAGREGMNRSMHGDTVAVTLLPRRRWRAPTDRKRLTHAAEEEE------------DIPLEEFQDAEGAGD--GGEAPPGAMPT 403          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A2V2VVM6_TRYCR (Putative rrp44p n=1 Tax=Trypanosoma cruzi TaxID=5693 RepID=A0A2V2VVM6_TRYCR)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-5
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0
Query:    9 ILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTGKMDI 80
            I G+W +    ++VLL GR  +NR++HGD VAV LLP   WR P D K L     +++  +A AV  G M +
Sbjct:  264 IRGQW-EGHNFSRVLLPGRSNLNRAIHGDIVAVELLPVSSWRGPKDAKPL-----DENATEAAAVAGGYMPV 329          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: V5BIY4_TRYCR (Mitochondrial exoribonuclease DSS-1 n=7 Tax=Trypanosoma cruzi TaxID=5693 RepID=V5BIY4_TRYCR)

HSP 1 Score: 52.0 bits (123), Expect = 1.940e-5
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0
Query:    9 ILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTGKMDI 80
            I G+W +    ++VLL GR  +NR++HGD VAV LLP   WR P D K L     +++  +A AV  G M +
Sbjct:  264 IRGQW-EGHNFSRVLLPGRSNLNRAIHGDIVAVELLPVSSWRGPKDAKPL-----DENATEAAAVAGGYMPV 329          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A422NN12_9TRYP (Exosome complex exonuclease RRP44 isoform X1 n=3 Tax=Trypanosoma TaxID=5690 RepID=A0A422NN12_9TRYP)

HSP 1 Score: 51.2 bits (121), Expect = 3.610e-5
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 0
Query:    9 ILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTG 76
            I G+W +     +VLL GR  +NR++HGD VAV LLP  +WR P D K L    ++D+  +A A+  G
Sbjct:  264 IRGQW-EGHNFPRVLLPGRANLNRAIHGDIVAVELLPMSLWRGPKDAKPL----EDDATTEAAALAAG 326          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A833WGM2_PHYIN (DIS3-like exonuclease 1 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WGM2_PHYIN)

HSP 1 Score: 51.2 bits (121), Expect = 3.670e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 0
Query:   21 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 74
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++D+V+
Sbjct:  348 KVFVFGRAAMNRGVHGDRVAVEILPKAHWRAPQSDRLLVHYTQDEERERESDSVE 402          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: D0NJG3_PHYIT (DIS3-like exonuclease 1 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NJG3_PHYIT)

HSP 1 Score: 51.2 bits (121), Expect = 3.670e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 0
Query:   21 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 74
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++D+V+
Sbjct:  555 KVFVFGRAAMNRGVHGDRVAVEILPKAHWRAPQSDRLLVHYTQDEERERESDSVE 609          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A2D4BNP4_PYTIN (DIS3-like exonuclease 1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNP4_PYTIN)

HSP 1 Score: 51.2 bits (121), Expect = 3.690e-5
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 0
Query:   11 GEWIDSSGSA------KVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDS 66
            G  I S G+A      +VL+LGR+ +NR +HGD V V+LLP+  WR P   ++L     ED+
Sbjct:  574 GTTITSDGTAVVPAPERVLVLGRDAMNRGVHGDKVVVQLLPRAQWRAPRSDRQLVHYASEDT 635          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A067Q0I7_9AGAM (Uncharacterized protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q0I7_9AGAM)

HSP 1 Score: 50.8 bits (120), Expect = 4.940e-5
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
Query:   22 VLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDR--KRLTFVPDEDSGADADAVDTGKMDIHLDHDXXXXXXXEAGGGVA 99
            +LL+GRE +NRS+HGD VAV + P+  W+ P D    + T + ++D+    D+ + G+ D  +D +       EA G VA
Sbjct:  295 ILLVGRENMNRSVHGDVVAVEVFPESEWKAPADEVVDQETTLKNDDA---EDSEEEGEGDEVIDKERKVLGTGEASGRVA 371          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A0W8BJN7_PHYNI (DIS3-like exonuclease 1 n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BJN7_PHYNI)

HSP 1 Score: 50.8 bits (120), Expect = 4.970e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 0
Query:   21 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 74
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++++VD
Sbjct:  347 KVFVFGRAAMNRGVHGDRVAVEMLPKAHWRAPQSDRLLVHYTQDEEREHESESVD 401          
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: W2QZJ8_PHYPN (DIS3-like exonuclease 1 n=11 Tax=Phytophthora TaxID=4783 RepID=W2QZJ8_PHYPN)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 0
Query:   21 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 74
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++++VD
Sbjct:  347 KVFVFGRAAMNRGVHGDRVAVEMLPKAHWRAPQSDRLLVHYTQDEEREHESESVD 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LN43_ECTSI6.790e-2051.92DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A2V2VVM6_TRYCR1.870e-541.67Putative rrp44p n=1 Tax=Trypanosoma cruzi TaxID=56... [more]
V5BIY4_TRYCR1.940e-541.67Mitochondrial exoribonuclease DSS-1 n=7 Tax=Trypan... [more]
A0A422NN12_9TRYP3.610e-542.65Exosome complex exonuclease RRP44 isoform X1 n=3 T... [more]
A0A833WGM2_PHYIN3.670e-543.64DIS3-like exonuclease 1 n=1 Tax=Phytophthora infes... [more]
D0NJG3_PHYIT3.670e-543.64DIS3-like exonuclease 1 n=1 Tax=Phytophthora infes... [more]
A0A2D4BNP4_PYTIN3.690e-541.94DIS3-like exonuclease 1 n=1 Tax=Pythium insidiosum... [more]
A0A067Q0I7_9AGAM4.940e-536.25Uncharacterized protein n=1 Tax=Jaapia argillacea ... [more]
A0A0W8BJN7_PHYNI4.970e-543.64DIS3-like exonuclease 1 n=2 Tax=Phytophthora nicot... [more]
W2QZJ8_PHYPN5.010e-543.64DIS3-like exonuclease 1 n=11 Tax=Phytophthora TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.690coord: 11..76
e-value: 1.2E-10
score: 43.0
IPR033771Rrp44-like cold shock domainPFAMPF17216Rrp44_CSD1coord: 19..54
e-value: 7.3E-5
score: 22.5
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 18..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18755contigH-paniculata_contig18755:2359..3881 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18755.4657.1mRNA_H-paniculata_contig18755.4657.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18755 2359..3883 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18755.4657.1 ID=prot_H-paniculata_contig18755.4657.1|Name=mRNA_H-paniculata_contig18755.4657.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
EGGRGGGGILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWR
VPTDRKRLTFVPDEDSGADADAVDTGKMDIHLDHDHMDDDHMEAGGGVAR
PGAMPT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033771Rrp44_CSD1
IPR012340NA-bd_OB-fold