mRNA_H-paniculata_contig18755.4657.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18755.4657.1
Unique NamemRNA_H-paniculata_contig18755.4657.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.790e-20
Identity = 54/104 (51.92%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    7 GRGGGGILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTGKMDIHLDHDXXXXXXXEAGGGVARPGAMPT 318
            G GGG  L  W D+SG AKVL+ GREG+NRSMHGDTVAV LLP++ WR PTDRKRLT   +E+             DI L+         +  GG A PGAMPT
Sbjct:  314 GAGGGAALDGWTDASGRAKVLVAGREGMNRSMHGDTVAVTLLPRRRWRAPTDRKRLTHAAEEEE------------DIPLEEFQDAEGAGD--GGEAPPGAMPT 403
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A2V2VVM6_TRYCR (Putative rrp44p n=1 Tax=Trypanosoma cruzi TaxID=5693 RepID=A0A2V2VVM6_TRYCR)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-5
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   25 ILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTGKMDI 240
            I G+W +    ++VLL GR  +NR++HGD VAV LLP   WR P D K L     +++  +A AV  G M +
Sbjct:  264 IRGQW-EGHNFSRVLLPGRSNLNRAIHGDIVAVELLPVSSWRGPKDAKPL-----DENATEAAAVAGGYMPV 329
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: V5BIY4_TRYCR (Mitochondrial exoribonuclease DSS-1 n=7 Tax=Trypanosoma cruzi TaxID=5693 RepID=V5BIY4_TRYCR)

HSP 1 Score: 52.0 bits (123), Expect = 1.940e-5
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   25 ILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTGKMDI 240
            I G+W +    ++VLL GR  +NR++HGD VAV LLP   WR P D K L     +++  +A AV  G M +
Sbjct:  264 IRGQW-EGHNFSRVLLPGRSNLNRAIHGDIVAVELLPVSSWRGPKDAKPL-----DENATEAAAVAGGYMPV 329
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A422NN12_9TRYP (Exosome complex exonuclease RRP44 isoform X1 n=3 Tax=Trypanosoma TaxID=5690 RepID=A0A422NN12_9TRYP)

HSP 1 Score: 51.2 bits (121), Expect = 3.610e-5
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   25 ILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDSGADADAVDTG 228
            I G+W +     +VLL GR  +NR++HGD VAV LLP  +WR P D K L    ++D+  +A A+  G
Sbjct:  264 IRGQW-EGHNFPRVLLPGRANLNRAIHGDIVAVELLPMSLWRGPKDAKPL----EDDATTEAAALAAG 326
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A833WGM2_PHYIN (DIS3-like exonuclease 1 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WGM2_PHYIN)

HSP 1 Score: 51.2 bits (121), Expect = 3.670e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   61 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 222
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++D+V+
Sbjct:  348 KVFVFGRAAMNRGVHGDRVAVEILPKAHWRAPQSDRLLVHYTQDEERERESDSVE 402
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: D0NJG3_PHYIT (DIS3-like exonuclease 1 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NJG3_PHYIT)

HSP 1 Score: 51.2 bits (121), Expect = 3.670e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   61 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 222
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++D+V+
Sbjct:  555 KVFVFGRAAMNRGVHGDRVAVEILPKAHWRAPQSDRLLVHYTQDEERERESDSVE 609
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A2D4BNP4_PYTIN (DIS3-like exonuclease 1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNP4_PYTIN)

HSP 1 Score: 51.2 bits (121), Expect = 3.690e-5
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:   31 GEWIDSSGSA------KVLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDRKRLTFVPDEDS 198
            G  I S G+A      +VL+LGR+ +NR +HGD V V+LLP+  WR P   ++L     ED+
Sbjct:  574 GTTITSDGTAVVPAPERVLVLGRDAMNRGVHGDKVVVQLLPRAQWRAPRSDRQLVHYASEDT 635
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A067Q0I7_9AGAM (Uncharacterized protein n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q0I7_9AGAM)

HSP 1 Score: 50.8 bits (120), Expect = 4.940e-5
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   64 VLLLGREGINRSMHGDTVAVRLLPKKMWRVPTDR--KRLTFVPDEDSGADADAVDTGKMDIHLDHDXXXXXXXEAGGGVA 297
            +LL+GRE +NRS+HGD VAV + P+  W+ P D    + T + ++D+    D+ + G+ D  +D +       EA G VA
Sbjct:  295 ILLVGRENMNRSVHGDVVAVEVFPESEWKAPADEVVDQETTLKNDDA---EDSEEEGEGDEVIDKERKVLGTGEASGRVA 371
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BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: A0A0W8BJN7_PHYNI (DIS3-like exonuclease 1 n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BJN7_PHYNI)

HSP 1 Score: 50.8 bits (120), Expect = 4.970e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   61 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 222
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++++VD
Sbjct:  347 KVFVFGRAAMNRGVHGDRVAVEMLPKAHWRAPQSDRLLVHYTQDEEREHESESVD 401
[Close]
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Match: W2QZJ8_PHYPN (DIS3-like exonuclease 1 n=11 Tax=Phytophthora TaxID=4783 RepID=W2QZJ8_PHYPN)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-5
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   61 KVLLLGREGINRSMHGDTVAVRLLPKKMWRVP-TDRKRLTFVPDEDSGADADAVD 222
            KV + GR  +NR +HGD VAV +LPK  WR P +DR  + +  DE+   ++++VD
Sbjct:  347 KVFVFGRAAMNRGVHGDRVAVEMLPKAHWRAPQSDRLLVHYTQDEEREHESESVD 401
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18755.4657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LN43_ECTSI6.790e-2051.92DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A2V2VVM6_TRYCR1.870e-541.67Putative rrp44p n=1 Tax=Trypanosoma cruzi TaxID=56... [more]
V5BIY4_TRYCR1.940e-541.67Mitochondrial exoribonuclease DSS-1 n=7 Tax=Trypan... [more]
A0A422NN12_9TRYP3.610e-542.65Exosome complex exonuclease RRP44 isoform X1 n=3 T... [more]
A0A833WGM2_PHYIN3.670e-543.64DIS3-like exonuclease 1 n=1 Tax=Phytophthora infes... [more]
D0NJG3_PHYIT3.670e-543.64DIS3-like exonuclease 1 n=1 Tax=Phytophthora infes... [more]
A0A2D4BNP4_PYTIN3.690e-541.94DIS3-like exonuclease 1 n=1 Tax=Pythium insidiosum... [more]
A0A067Q0I7_9AGAM4.940e-536.25Uncharacterized protein n=1 Tax=Jaapia argillacea ... [more]
A0A0W8BJN7_PHYNI4.970e-543.64DIS3-like exonuclease 1 n=2 Tax=Phytophthora nicot... [more]
W2QZJ8_PHYPN5.010e-543.64DIS3-like exonuclease 1 n=11 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18755contigH-paniculata_contig18755:2359..3883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue7.8e-17
Seed eggNOG ortholog2880.D8LN43
Preferred nameDIS3L
KEGG koko:K12585,ko:K18681
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000177,GO:0000178,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0019899,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons3
Model size321
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18755.4657.1prot_H-paniculata_contig18755.4657.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18755 2359..3881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929444.7680917-CDS-H-paniculata_contig18755:2358..24211622929444.7680917-CDS-H-paniculata_contig18755:2358..2421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18755 2359..2421 +
1691480864.0377207-CDS-H-paniculata_contig18755:2358..24211691480864.0377207-CDS-H-paniculata_contig18755:2358..2421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18755 2359..2421 +
1622929444.7826724-CDS-H-paniculata_contig18755:3285..33651622929444.7826724-CDS-H-paniculata_contig18755:3285..3365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18755 3286..3365 +
1691480864.047325-CDS-H-paniculata_contig18755:3285..33651691480864.047325-CDS-H-paniculata_contig18755:3285..3365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18755 3286..3365 +
1622929444.8015585-CDS-H-paniculata_contig18755:3706..38811622929444.8015585-CDS-H-paniculata_contig18755:3706..3881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18755 3707..3881 +
1691480864.05702-CDS-H-paniculata_contig18755:3706..38811691480864.05702-CDS-H-paniculata_contig18755:3706..3881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18755 3707..3881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18755.4657.1

>prot_H-paniculata_contig18755.4657.1 ID=prot_H-paniculata_contig18755.4657.1|Name=mRNA_H-paniculata_contig18755.4657.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
EGGRGGGGILGEWIDSSGSAKVLLLGREGINRSMHGDTVAVRLLPKKMWR
VPTDRKRLTFVPDEDSGADADAVDTGKMDIHLDHDHMDDDHMEAGGGVAR
PGAMPT
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mRNA from alignment at H-paniculata_contig18755:2359..3883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18755.4657.1 ID=mRNA_H-paniculata_contig18755.4657.1|Name=mRNA_H-paniculata_contig18755.4657.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1525bp|location=Sequence derived from alignment at H-paniculata_contig18755:2359..3883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGAGGAAGAGGAGGGGGAGGCATACTGGGCGAATGGATTGATTCAAG
CGGCAGTGCAAAGGTGGCCGTTTTTTGCACGTCGGATGAGACAAAACCAG
CTGTTTTTTTTTTTTTTCAAGATGTTCGATTTCGTTCTGTTTACAATGCT
CTCTATGCAACAGAGCAGATATAAAACACGCGCGATGTGTGAAAGAATTG
GAAAATGACCTTGAGGCTGAAAACAACACAGTGAAGTTATTATAACGGCT
TGTAACGCTGCACTAGTCAAACGTCAACTTTTTCCGGCGTTTTTTTTCTT
ATTTTTTTGTTTCACAGAATTTGAACAATAATAGAGAGCTAGACATCGCC
ATTTTCTATGTGCTGTTGGAAAATATTTTGCTGTTCAGTAGGACGGGTAT
TATTCCCCATGTGCTGTTGTGGTAAGACAATCTCAATTCGATTCATATCA
ACTTACATGTGGCACGAATTTGCATTGCGGTTGATGTGTTTTTGCGTTTG
AGTTGAGTTGCACAGAAAAACCTGTCTTGCTTTTGTTTTTTCCATCTCTT
TTTCAGCCTTTCTTTTTTGCTGTCAACCCCACTACTAGTAGATAATACAC
TACCTCTCCCCCCTCTCCCACTAAAAACCACTTGGTTCAGTTTTTGTCCG
GTGTATACCTGGGGCGTGTTTGACCCCTCTCGGAAGGCATGCGCGTCATG
CATGGTCCGTTTGGTCATACTTTATTCTCGATAGCGCTACTGATGACAAT
GCAGTTTCACACACTCCTGTATGTACTGTGCGGACGGAATTCGGGTTATT
GTATCACATTGCGTCGTATCGCTGCATCACTAAGCGCACGCTTCCACCGT
CATCGCAACTACTGCTACTATCACTGCTGCTGTCTACCTTGTGTCGTGGC
TTGGCTTGGCATGCCATGGCGCGACAGGTTTTATTGTTGGGTCGAGAAGG
CATAAACCGGTCGATGCACGGTGACACGGTGGCGGTTAGACTGCTGCCCA
AGAAGATGTGAGAGTGGGGACACCGTAGGAAATTACCGTAGTTCACACGG
CATGTACCGCTTAGAAGAAAGTCTTCCTTCTTACTTCGGGTGAGACTCGA
AAGCTTTAGGTTGTTGTGTAGCAACCTCACCCAAAGTATGAGCCTTTCTC
ATGATCGATGGAGCGCCCGTCATCTCATGGACCAGCCGAAAGTGATTAAT
TAGGCGAATGGTTGATGGAAGTACCATTCGTACACAGCGACCATCGAATA
CGAACGATCCGCCGAATAACAGTCACCAACGAAATGAAATGAAATGAAAT
AGAGCAAAATGAAAATATTCAATTAGCACAGATTTAATGACTAATCAGGT
GGCGTGTGCCCACTGACCGCAAGAGACTGACTTTCGTCCCGGACGAGGAT
TCGGGGGCTGATGCTGATGCTGTTGACACCGGCAAGATGGACATACACTT
GGACCATGACCACATGGATGATGACCATATGGAGGCAGGAGGTGGAGTAG
CGCGTCCCGGTGCAATGCCGACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18755:2359..3883+

>mRNA_H-paniculata_contig18755.4657.1 ID=mRNA_H-paniculata_contig18755.4657.1|Name=mRNA_H-paniculata_contig18755.4657.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig18755:2359..3883+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGAGGAAGAGGAGGGGGAGGCATACTGGGCGAATGGATTGATTCAAG
CGGCAGTGCAAAGGAGGGAGGAAGAGGAGGGGGAGGCATACTGGGCGAAT
GGATTGATTCAAGCGGCAGTGCAAAGGTTTTATTGTTGGGTCGAGAAGGC
ATAAACCGGTCGATGCACGGTGACACGGTGGCGGTTAGACTGCTGCCCAA
GAAGATGTTTTATTGTTGGGTCGAGAAGGCATAAACCGGTCGATGCACGG
TGACACGGTGGCGGTTAGACTGCTGCCCAAGAAGATGTGGCGTGTGCCCA
CTGACCGCAAGAGACTGACTTTCGTCCCGGACGAGGATTCGGGGGCTGAT
GCTGATGCTGTTGACACCGGCAAGATGGACATACACTTGGACCATGACCA
CATGGATGATGACCATATGGAGGCAGGAGGTGGAGTAGCGCGTCCCGGTG
CAATGCCGACAGTGGCGTGTGCCCACTGACCGCAAGAGACTGACTTTCGT
CCCGGACGAGGATTCGGGGGCTGATGCTGATGCTGTTGACACCGGCAAGA
TGGACATACACTTGGACCATGACCACATGGATGATGACCATATGGAGGCA
GGAGGTGGAGTAGCGCGTCCCGGTGCAATGCCGACA
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