mRNA_H-paniculata_contig18753.4656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18753.4656.1
Unique NamemRNA_H-paniculata_contig18753.4656.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A8J4F9E6_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F9E6_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 4.200e-10
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   31 GAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            GA+ LG N   S R KHIDV+HH+VR+    G+V + Y  T+D  AD+LTK +   KF K  KA+
Sbjct:   33 GALSLGNNPITSARLKHIDVQHHLVRERVARGEVAISYCSTEDMVADILTKAVGEIKFKKCQKAM 97
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BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A4Y2HGZ5_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HGZ5_ARAVE)

HSP 1 Score: 63.5 bits (153), Expect = 6.220e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   28 RGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            +GA+KL  N    RRTKHID+ HH VR+A +   + + Y+ T+D  AD+LTK L   K YK  +AL
Sbjct:  245 KGAIKLAENPIFHRRTKHIDIRHHFVREALNNNVINIKYISTEDMAADVLTKALPFPKHYKCLEAL 310
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A4Y2HRV3_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HRV3_ARAVE)

HSP 1 Score: 63.2 bits (152), Expect = 7.230e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   28 RGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            +GA+KL  N    RRTKHID+ HH VR+A +   + + Y+ T+D  AD+LTK L   K YK  +AL
Sbjct:  245 KGAIKLAENPIFHRRTKHIDIRHHFVREALNNNVINIKYISTEDMAADVLTKALPSPKHYKCLEAL 310
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A4Y2RHG3_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2RHG3_ARAVE)

HSP 1 Score: 63.2 bits (152), Expect = 8.860e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   28 RGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            +GA+KL  N    RRTKHID+ HH VR+A +   + + Y+ T+D  AD+LTK L   K YK  +AL
Sbjct:  533 KGAIKLAENPIFHRRTKHIDIRHHFVREALNNNVINIKYISTEDMAADVLTKALPSPKHYKCLEAL 598
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A4Y2JJQ0_ARAVE (Copia protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2JJQ0_ARAVE)

HSP 1 Score: 63.2 bits (152), Expect = 8.870e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   28 RGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            +GA+KL  N    RRTKHID+ HH VR+A +   + + Y+ T+D  AD+LTK L   K YK  +AL
Sbjct:  546 KGAIKLAENPIFHRRTKHIDIRHHFVREALNNNVINIKYISTEDMAADVLTKALPSPKHYKCLEAL 611
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A4Y2PWC7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2PWC7_ARAVE)

HSP 1 Score: 63.2 bits (152), Expect = 9.010e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   28 RGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            +GA+KL  N    RRTKHID+ HH VR+A +   + + Y+ T+D  AD+LTK L   K YK  +AL
Sbjct:  832 KGAIKLAENPIFHRRTKHIDIRHHFVREALNNNVINIKYISTEDMAADVLTKALPSPKHYKCLEAL 897
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A4Y2Q694_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q694_ARAVE)

HSP 1 Score: 63.2 bits (152), Expect = 9.110e-10
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   28 RGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            +GA+KL  N    RRTKHID+ HH VR+A +   + + Y+ T+D  AD+LTK L   K YK  +AL
Sbjct: 1277 KGAIKLAENPIFHRRTKHIDIRHHFVREALNNNVINIKYISTEDMAADVLTKALPSPKHYKCLEAL 1342
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A8J4LZ87_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LZ87_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-9
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    7 WMGPQRQRGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYK 210
            WM  Q   GA+ LG N   S R+KHIDV+HH+VR+    G+V + Y  T+D  AD+LTK L   KF K
Sbjct:   79 WMDSQ---GALSLGNNPITSVRSKHIDVQHHLVRERVARGEVALSYCSTEDMVADILTKALGEIKFKK 143
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A8J4BBK8_9CHLO (Uncharacterized protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BBK8_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 1.700e-9
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   31 GAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            GA+ LG N   S R+KHIDV+HH+VR+    G+V + Y  T+D  AD+LTK L   KF K  KA+
Sbjct: 1285 GALSLGNNPITSARSKHIDVQHHLVRERVARGEVAISYCSTEDMVADILTKALGEIKFKKCRKAM 1349
[Close]
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Match: A0A4Y2BPA6_ARAVE (Copia protein n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BPA6_ARAVE)

HSP 1 Score: 59.3 bits (142), Expect = 1.920e-9
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   28 RGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKDQHADLLTKPLNMAKFYKHTKAL 225
            +GA+KL  N    RRTKHID+ HH VR+A +   + + ++  +D  AD+LTK L   K YK  +AL
Sbjct:   47 KGAIKLAENPIFHRRTKHIDIRHHFVREALNNNVINIKFISIEDMAADVLTKALPSPKHYKCLEAL 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18753.4656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4F9E6_9CHLO4.200e-1047.69Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A4Y2HGZ5_ARAVE6.220e-1046.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2HRV3_ARAVE7.230e-1046.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2RHG3_ARAVE8.860e-1046.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2JJQ0_ARAVE8.870e-1046.97Copia protein n=1 Tax=Araneus ventricosus TaxID=18... [more]
A0A4Y2PWC7_ARAVE9.010e-1046.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2Q694_ARAVE9.110e-1046.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J4LZ87_9CHLO1.250e-948.53Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4BBK8_9CHLO1.700e-949.23Uncharacterized protein n=3 Tax=Volvox africanus T... [more]
A0A4Y2BPA6_ARAVE1.920e-943.94Copia protein n=3 Tax=Araneus ventricosus TaxID=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18753contigH-paniculata_contig18753:1669..1911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size234
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929444.6802905-UTR-H-paniculata_contig18753:1668..16771622929444.6802905-UTR-H-paniculata_contig18753:1668..1677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18753 1669..1677 +
1691480864.0212903-UTR-H-paniculata_contig18753:1668..16771691480864.0212903-UTR-H-paniculata_contig18753:1668..1677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18753 1669..1677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929444.7030315-CDS-H-paniculata_contig18753:1677..19111622929444.7030315-CDS-H-paniculata_contig18753:1677..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18753 1678..1911 +
1691480864.0293922-CDS-H-paniculata_contig18753:1677..19111691480864.0293922-CDS-H-paniculata_contig18753:1677..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18753 1678..1911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18753.4656.1prot_H-paniculata_contig18753.4656.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18753 1678..1911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18753.4656.1

>prot_H-paniculata_contig18753.4656.1 ID=prot_H-paniculata_contig18753.4656.1|Name=mRNA_H-paniculata_contig18753.4656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MGPQRQRGAVKLGVNKHASRRTKHIDVEHHMVRDASDAGKVRVVYVRTKD
QHADLLTKPLNMAKFYKHTKALLTVVL*
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mRNA from alignment at H-paniculata_contig18753:1669..1911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18753.4656.1 ID=mRNA_H-paniculata_contig18753.4656.1|Name=mRNA_H-paniculata_contig18753.4656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig18753:1669..1911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATATTGGATGGGCCCCCAAAGACAACGAGGGGCTGTCAAGCTAGGGGT
CAATAAGCACGCTAGCCGTAGGACAAAGCACATAGATGTTGAACACCACA
TGGTGCGGGACGCGTCGGATGCCGGAAAGGTCAGGGTTGTTTACGTGCGG
ACGAAAGACCAACACGCAGATCTACTCACGAAGCCATTGAATATGGCTAA
ATTCTACAAGCATACCAAGGCATTGCTTACCGTAGTGTTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18753:1669..1911+

>mRNA_H-paniculata_contig18753.4656.1 ID=mRNA_H-paniculata_contig18753.4656.1|Name=mRNA_H-paniculata_contig18753.4656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig18753:1669..1911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCCCCAAAGACAACGAGGGGCTGTCAAGCTAGGGGTCAATAAGCA
CGCTAGCCGTAGGACAAAGCACATAGATGTTGAACACCACATGGTGCGGG
ACGCGTCGGATGCCGGAAAGGTCAGGGTTGTTTACGTGCGGACGAAAGAC
CAACACGCAGATCTACTCACGAAGCCATTGAATATGGCTAAATTCTACAA
GCATACCAAGGCATTGCTTACCGTAGTGTTATAGATGGGCCCCCAAAGAC
AACGAGGGGCTGTCAAGCTAGGGGTCAATAAGCACGCTAGCCGTAGGACA
AAGCACATAGATGTTGAACACCACATGGTGCGGGACGCGTCGGATGCCGG
AAAGGTCAGGGTTGTTTACGTGCGGACGAAAGACCAACACGCAGATCTAC
TCACGAAGCCATTGAATATGGCTAAATTCTACAAGCATACCAAGGCATTG
CTTACCGTAGTGTTATAG
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