mRNA_H-paniculata_contig18743.4650.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18743.4650.1
Unique NamemRNA_H-paniculata_contig18743.4650.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18743.4650.1 vs. uniprot
Match: A0A6H5JSK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK9_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 2.180e-44
Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 1 
Query:  319 PRQTAISLTCDLVDRVGRGHWRH--ESGEDDEANCLSVLVECREAFWSMDKVTERLVLATAGLAVRAWRAGSDATTRAALCFCATTVPSVPSALRRLALLQLCANAALQVGKPALADALF 672
            PRQ+A++LTCD+VDRVGRG W    + G   EA+ L VL ECR+AFW MD+VT+RLVLA AGL++RAWRAGS AT RAALCFC+ TVPSVPSALRRLALLQLCA+ ALQ+GKPALADALF
Sbjct:  658 PRQSAVALTCDMVDRVGRG-WAQPPQPGGTGEASRLEVLAECRQAFWGMDEVTDRLVLAAAGLSLRAWRAGSTATARAALCFCSLTVPSVPSALRRLALLQLCASTALQIGKPALADALF 776
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BLAST of mRNA_H-paniculata_contig18743.4650.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 9.260e-41
Identity = 86/130 (66.15%), Postives = 99/130 (76.15%), Query Frame = 1 
Query:  322 RQTAISLTCDLVDRVGRGHWRHES-------------GEDDEANCLSVLVECREAFWSMDKVTERLVLATAGLAVRAWRAGSDATTRAALCFCATTVPSVPSALRRLALLQLCANAALQVGKPALADALF 672
            RQ+A++LTCD+VDRVGRG W                     EA+ L VL ECR+AFW MD+VT+RLVLA AGL++RAWRAGS AT RAALCFC+ TVPSVPSALRRLALLQLCA+ ALQ+GKPALADALF
Sbjct:  945 RQSAVALTCDMVDRVGRG-WAEPPQXXXXXXXXXXXXXXXXEASRLEVLAECRQAFWGMDEVTDRLVLAAAGLSLRAWRAGSTATARAALCFCSLTVPSVPSALRRLALLQLCASTALQIGKPALADALF 1073
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BLAST of mRNA_H-paniculata_contig18743.4650.1 vs. uniprot
Match: A0A067C8Y7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8Y7_SAPPC)

HSP 1 Score: 56.2 bits (134), Expect = 1.350e-5
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:  331 AISLTCDLVDRVGRGHWRHESGEDDEANCLSVLVECREAFWSMDKVTERLVLATAGLAVRAWRAGSDATTR----AALCFCATTVPSVPSALRRLALLQLCANAAL 636
            A SL C+ V  +     R     D E   L +LV+CR AF+ +DKV   L+     LAVRA+      +TR      L +C  T+PS+P  L +L+L+  CA  AL
Sbjct:  667 AASLLCNFVLALDAALTR-----DGEDALLQLLVDCRSAFYKLDKVKACLIRRVLALAVRAYPRIHMTSTRNFVKGCLAYCHITIPSLPDPLEKLSLMTACAKVAL 767
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18743.4650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JSK9_9PHAE2.180e-4473.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLV5_ECTSI9.260e-4166.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067C8Y7_SAPPC1.350e-536.79Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18743contigH-paniculata_contig18743:2276..3936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue8.9e-36
Seed eggNOG ortholog2880.D8LLV5
Preferred nameC16orf62
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.protein transport
EggNOG OGsKOG3682@1,KOG3682@2759
Ec32 ortholog descriptionUPF0505 family
Ec32 orthologEc-14_001830.1
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size674
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18743.4650.1prot_H-paniculata_contig18743.4650.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18743 2570..3936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.8165762-UTR-H-paniculata_contig18743:2275..25691622929443.8165762-UTR-H-paniculata_contig18743:2275..2569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18743 2276..2569 +
1691480863.7123466-UTR-H-paniculata_contig18743:2275..25691691480863.7123466-UTR-H-paniculata_contig18743:2275..2569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18743 2276..2569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.8317688-CDS-H-paniculata_contig18743:2569..27401622929443.8317688-CDS-H-paniculata_contig18743:2569..2740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18743 2570..2740 +
1691480863.7254722-CDS-H-paniculata_contig18743:2569..27401691480863.7254722-CDS-H-paniculata_contig18743:2569..2740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18743 2570..2740 +
1622929443.8458288-CDS-H-paniculata_contig18743:3729..39361622929443.8458288-CDS-H-paniculata_contig18743:3729..3936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18743 3730..3936 +
1691480863.7341301-CDS-H-paniculata_contig18743:3729..39361691480863.7341301-CDS-H-paniculata_contig18743:3729..3936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18743 3730..3936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18743.4650.1

>prot_H-paniculata_contig18743.4650.1 ID=prot_H-paniculata_contig18743.4650.1|Name=mRNA_H-paniculata_contig18743.4650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MQLYLTKTPRQTAISLTCDLVDRVGRGHWRHESGEDDEANCLSVLVECRE
AFWSMDKVTERLVLATAGLAVRAWRAGSDATTRAALCFCATTVPSVPSAL
RRLALLQLCANAALQVGKPALADALF
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mRNA from alignment at H-paniculata_contig18743:2276..3936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18743.4650.1 ID=mRNA_H-paniculata_contig18743.4650.1|Name=mRNA_H-paniculata_contig18743.4650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1661bp|location=Sequence derived from alignment at H-paniculata_contig18743:2276..3936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAAGTTATGATTGGGGTGGTGTTTGCCAATAATTGTGTAATCACCAACT
GGGTAGAGGATGGGATTTCCTGTGACAGTGTTTTTTCTTCCAACAATGAG
AACGTCTTTCCCCCCTTCAAATTGGAGTAAAAACAGGGTCTGAGTATGCG
TGGGAACCGTTTGGCACATCATCGTCATCATTCGTGCAACATTGCTTCTT
CAATTTACTAGTGTTCACGACAGTATGTATATTTGGCGTAATACCGTATT
TGTACTGTACGCACGGTGTATCCGAAAAAGAGCAAAATAAGAAGATGCAG
TTGTACTTGACGAAAACCCCCCGACAGACCGCTATCTCCCTGACATGCGA
CCTGGTCGACCGCGTGGGGCGGGGGCACTGGCGACACGAAAGTGGGGAGG
ATGACGAAGCGAACTGCCTGTCGGTTTTGGTGGAGTGCCGGGAGGCGTTT
TGGTCGATGGATAAGGTGAAAGACAAAAAGCCTCTCTACGTGAGCAAATG
AACCCCTTTGTAAAAGTAACATGCTAGGTGAAATAACGAGCATGAGTGAC
AAAGGAGTAGGATTTGTGTGCTGGGGTAAATGATAGTCAAGAAGGATGGC
CATTCAGCCAAAGAAGCATGAATATTCATTAAAAAAACGTAGGACCATTC
AGTCAACGCCTGGTGAATATATATCACAGTCACAATCATGTCATAGCAGT
GATTTCTTTCCCTACTATTTTTTTTTGTTTCAGGTGGAGATGAGGTGATT
GTGACTATCCGTCTCGGAACAGTTTTTGCATGGTTAAATCGTAGTGATGA
TGGCGGTCTTTTCTCACAAAACAGCGAAATATGTGTGTGTGTGTGTGTGT
GTGTTTTAAATCCAAGTCTGTGTGCGGCAAATATATACTCGTAGCCGGCC
TACTATATTGATGACCTTTTTTTAAGAGAGAGGTAAGCGACTGGGATGAA
GTCGTAACAAGGTAGTCGTAGGGGAACCTGCGGCTGGTAACAATTATAAA
ATAAATTATGTTTTATTATCTAGATTTAAAACCGAATTCATACCGAACTC
GAGTGTTCTTATTTAGATAGCCAAACCTACTGAGTCATATTCGGGAATCA
TGTATTTACTACACTTACACACGGATTTGTCTTGTCAGAGTATTTTTCAG
ACAGTGTATAGTTTCTAATATCAGTGCCGAAGGAATCCTGGCGAAGGAAG
GCGATAGCGATGGTTTTCCGATATGTAAATTGGTCTGGAAGGGTGAGGGG
GGTTGAGGGATTTAGGAGGAAAGTTGCATCATTTTCGAGACACGTTTTAT
TGGTGGCGTCGGGAAGAGCGATTGGCCGTCGGAGGTCGCTCTGATGAGGA
ACAACACCTTCGTTCTCTTGAGGATGCAGGGTTAATGGTCTACCAACCAT
GGCATAAGAGTCATGAGTACGCCCTCCGCCTCCCCTCCCTCCCCTCCCCC
CAAGGTCACCGAGAGATTGGTCTTGGCTACCGCCGGGCTGGCGGTGCGAG
CGTGGCGCGCTGGCTCGGACGCAACCACACGGGCCGCTCTGTGCTTTTGT
GCCACTACTGTACCTTCCGTGCCGTCGGCCCTCCGTCGACTGGCGCTGCT
CCAGCTCTGCGCCAACGCGGCATTGCAGGTCGGGAAGCCAGCTCTCGCCG
ATGCCTTATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig18743:2276..3936+

>mRNA_H-paniculata_contig18743.4650.1 ID=mRNA_H-paniculata_contig18743.4650.1|Name=mRNA_H-paniculata_contig18743.4650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig18743:2276..3936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTTGTACTTGACGAAAACCCCCCGACAGACCGCTATCTCCCTGAC
ATGCGACCTGGTCGACCGCGTGGGGCGGGGGCACTGGCGACACGAAAGTG
GGGAGGATGACGAAGCGAACTGCCTGTCGGTTTTGGTGGAGTGCCGGGAG
GCGTTTTGGTCGATGGATAAGATGCAGTTGTACTTGACGAAAACCCCCCG
ACAGACCGCTATCTCCCTGACATGCGACCTGGTCGACCGCGTGGGGCGGG
GGCACTGGCGACACGAAAGTGGGGAGGATGACGAAGCGAACTGCCTGTCG
GTTTTGGTGGAGTGCCGGGAGGCGTTTTGGTCGATGGATAAGGTCACCGA
GAGATTGGTCTTGGCTACCGCCGGGCTGGCGGTGCGAGCGTGGCGCGCTG
GCTCGGACGCAACCACACGGGCCGCTCTGTGCTTTTGTGCCACTACTGTA
CCTTCCGTGCCGTCGGCCCTCCGTCGACTGGCGCTGCTCCAGCTCTGCGC
CAACGCGGCATTGCAGGTCGGGAAGCCAGCTCTCGCCGATGCCTTATTCG
TCACCGAGAGATTGGTCTTGGCTACCGCCGGGCTGGCGGTGCGAGCGTGG
CGCGCTGGCTCGGACGCAACCACACGGGCCGCTCTGTGCTTTTGTGCCAC
TACTGTACCTTCCGTGCCGTCGGCCCTCCGTCGACTGGCGCTGCTCCAGC
TCTGCGCCAACGCGGCATTGCAGGTCGGGAAGCCAGCTCTCGCCGATGCC
TTATTC
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