mRNA_H-paniculata_contig18735.4646.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18735.4646.1
Unique NamemRNA_H-paniculata_contig18735.4646.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.820e-16
Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLV 195
            DGA+PHTG+  P  LN  G   GW V LVTQPAQSPDLNINDLG +ASLK RVW     +ID LV
Sbjct:  300 DGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-15
Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLERV-RQSLFRYNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKI 372
            D A PH   D P  L E  +D G++++L+ QPAQSPDLN+ DLGF+ ++++   +E   +++ LV+ V + Y SYD   +      S++     +K  GGN+F   +   ++ QR G LP  V++
Sbjct:   86 DNARPHINIDDPEFLEEANKD-GFDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMYVMEEIMKVKGGNNFKNPHKGKKRLQRLGLLPSYVEV 209          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: UPI00053F3BA8 (uncharacterized protein LOC104908869 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3BA8)

HSP 1 Score: 79.7 bits (195), Expect = 4.730e-15
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLERVRQSL-FRYNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKI 372
            D A PH  + T     E     G+N+ LV QPAQSPDLN+ DLGF+ +++S   ++   T+D L+K V++ YD YD     R+  SL +     LK  G N+++  ++  ++ +R G LP S +I
Sbjct:  236 DNARPHI-DSTDADFIEAATSDGFNMRLVNQPAQSPDLNVLDLGFFNAIQSLKDQKAPKTVDKLIKVVQAAYDEYDPKLGNRIFLSLQYCMIEVLKLKGNNNYNPPHVGKQRMEREGVLPISAEI 359          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 74.7 bits (182), Expect = 3.970e-14
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLERVRQSLFRYNHALKALGG-NDFDVQNIETRK-RQRAGSLPKSV 366
            D A PH   D P  +     DGGW++++  QPA SPD N+NDLGF+AS++S   +++  TI+ LV  V+  Y+  +  T+++V  +L     A   + G N + + ++   + R   G LP S+
Sbjct:   40 DNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEAYNQLEYSTIDKVFVTLQSVLQASMNVDGCNKYQLPHLSKEQLRMNNGLLPPSL 162          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: A0A6G0PL40_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PL40_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.430e-14
Identity = 37/104 (35.58%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   67 GWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLERVRQSLFR-YNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKID 375
            GWN+ L  QPA SPD N  DLG+++S+++  ++E    ID L++ V+  YD+ +   L+ +  +L + +  AL+A G N++ + +I   K +R G LP+S+  D
Sbjct:  225 GWNIQLEFQPANSPDYNTLDLGYFSSIQALQYQEDCYNIDQLIRAVRKSYDALECEKLDNIFLTLQKVFECALRAGGSNEYKLPHIGKDKLRRLGKLPQSLPCD 328          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.540e-14
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYG-TIDGLVKGVKSMYDSYDAVTLERVRQSLFR-YNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKI 372
            DGA PHT  +T   L   G+  G+++ + TQPAQSPDLN+NDLGF+ SLK          +++ ++K ++  Y+   A  L+R+  SL   Y   LK  G NDF  + +   K+++   +   + +
Sbjct:   37 DGAKPHTAAET--WLKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQEELHLGKQRKGFKMDYKLNL 160          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: UPI001ADC3EA5 (uncharacterized protein LOC107303866 isoform X1 n=2 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADC3EA5)

HSP 1 Score: 76.3 bits (186), Expect = 6.180e-14
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLERVRQSLFR-YNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKID 375
            D A PH   D  R   E  +   +N+ LV QPA SPDLN+ DLGF+ S+++  ++    T + LV GV   +  Y      R+  SL       +K  GGN FD+ +I+    +R G LP  ++ D
Sbjct:  179 DNARPHIAPDD-RMFCEAAKQDNFNIKLVCQPANSPDLNVLDLGFFNSIQAIQYKSTSTTTEELVAGVDRAFQDYSVRRSNRIFLSLHACMREIIKVHGGNSFDLPHIKKGVLERQGHLPLQLRCD 303          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: W2R6N8_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R6N8_PHYPN)

HSP 1 Score: 74.3 bits (181), Expect = 6.610e-14
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLER-------VRQSLFRYNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKID 375
            D A PH   D P  L   GR GGW++    +PAQSPDLN+ D GF+ +++S        T + L+  V+  + S    TL +       + QS+ R+N      GGN F + +I+  K  RAG LP S+  D
Sbjct:   43 DNAKPHVLPDDPEVL-VAGRAGGWSILFRNRPAQSPDLNVLDCGFFNAIQSLQSVTVPRTAEDLISEVERAFASTTTTTLNKTFLSVQLIMQSIMRHN------GGNAFGLSHIQKDKLLRAGELPDSLSCD 167          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527)

HSP 1 Score: 76.3 bits (186), Expect = 1.130e-13
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLERVRQSL-FRYNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKID 375
            D A PH     P+ +       G+N+ L+ QPAQSPDLN+ DLGF+ ++++  ++     +D L+  V+  YD +D   L+     L +     LK  GGN+F   +   RK +R G LP++V +D
Sbjct:  371 DNARPHIHASDPQFI-AAATQNGFNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVD 495          
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Match: Q49KC8_PEA (Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID=Q49KC8_PEA)

HSP 1 Score: 75.9 bits (185), Expect = 1.350e-13
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    1 DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLKSRVWRERYGTIDGLVKGVKSMYDSYDAVTLERVRQSL-FRYNHALKALGGNDFDVQNIETRKRQRAGSLPKSVKID 375
            D A  H   D P    E     G+++ L+ QPA SPDLNI DLGF+++++S  ++E   TID L+  V   ++++ ++   R+  SL       +K  G N + + ++   + +R G LP  +K D
Sbjct:  274 DNARTHINHDDPL-FREAATKDGFDIRLMCQPANSPDLNILDLGFFSAIQSLQYKEAPKTIDELISAVVKSFENFPSIKSNRIFVSLQLCMIEIMKEKGSNKYKIPHVNKERLERVGQLPIQIKCD 398          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18735.4646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE4.820e-1664.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000B778AD21.150e-1535.20uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
UPI00053F3BA84.730e-1536.80uncharacterized protein LOC104908869 n=1 Tax=Beta ... [more]
A0A081AGH7_PHYPR3.970e-1433.87Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
A0A6G0PL40_9STRA5.430e-1435.58Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A7S2FC44_9STRA5.540e-1434.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001ADC3EA56.180e-1434.92uncharacterized protein LOC107303866 isoform X1 n=... [more]
W2R6N8_PHYPN6.610e-1435.61Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
UPI00053F85271.130e-1334.13uncharacterized protein LOC104897330 n=1 Tax=Beta ... [more]
Q49KC8_PEA1.350e-1331.75Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18735contigH-paniculata_contig18735:1856..2233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog161934.XP_010696339.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.3173056-CDS-H-paniculata_contig18735:1855..22331622929443.3173056-CDS-H-paniculata_contig18735:1855..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18735 1856..2233 -
1691480863.5085075-CDS-H-paniculata_contig18735:1855..22331691480863.5085075-CDS-H-paniculata_contig18735:1855..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18735 1856..2233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18735.4646.1prot_H-paniculata_contig18735.4646.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18735 1856..2233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18735.4646.1

>prot_H-paniculata_contig18735.4646.1 ID=prot_H-paniculata_contig18735.4646.1|Name=mRNA_H-paniculata_contig18735.4646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
DGATPHTGEDTPRKLNELGRDGGWNVNLVTQPAQSPDLNINDLGFYASLK
SRVWRERYGTIDGLVKGVKSMYDSYDAVTLERVRQSLFRYNHALKALGGN
DFDVQNIETRKRQRAGSLPKSVKID*
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mRNA from alignment at H-paniculata_contig18735:1856..2233-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18735.4646.1 ID=mRNA_H-paniculata_contig18735.4646.1|Name=mRNA_H-paniculata_contig18735.4646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig18735:1856..2233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGAGCGACTCCCCACACGGGAGAAGACACACCGCGGAAGCTCAACGA ACTCGGGAGGGACGGGGGGTGGAACGTCAATCTTGTAACTCAGCCTGCGC AGTCACCAGATCTCAACATCAACGATTTGGGGTTCTATGCATCTCTGAAA AGTAGGGTTTGGAGGGAGCGTTATGGTACGATAGACGGCCTTGTGAAGGG GGTAAAGAGCATGTACGATTCGTACGATGCGGTAACCTTAGAGAGGGTAC GGCAAAGCCTCTTCCGGTACAATCACGCCCTGAAGGCGCTAGGAGGTAAC GATTTCGATGTACAGAACATCGAAACCAGGAAAAGGCAGCGTGCGGGGAG TCTGCCAAAATCGGTCAAAATCGATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18735:1856..2233-

>mRNA_H-paniculata_contig18735.4646.1 ID=mRNA_H-paniculata_contig18735.4646.1|Name=mRNA_H-paniculata_contig18735.4646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig18735:1856..2233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGAGCGACTCCCCACACGGGAGAAGACACACCGCGGAAGCTCAACGA
ACTCGGGAGGGACGGGGGGTGGAACGTCAATCTTGTAACTCAGCCTGCGC
AGTCACCAGATCTCAACATCAACGATTTGGGGTTCTATGCATCTCTGAAA
AGTAGGGTTTGGAGGGAGCGTTATGGTACGATAGACGGCCTTGTGAAGGG
GGTAAAGAGCATGTACGATTCGTACGATGCGGTAACCTTAGAGAGGGTAC
GGCAAAGCCTCTTCCGGTACAATCACGCCCTGAAGGCGCTAGGAGGTAAC
GATTTCGATGTACAGAACATCGAAACCAGGAAAAGGCAGCGTGCGGGGAG
TCTGCCAAAATCGGTCAAAATCGATTGAGATGGAGCGACTCCCCACACGG
GAGAAGACACACCGCGGAAGCTCAACGAACTCGGGAGGGACGGGGGGTGG
AACGTCAATCTTGTAACTCAGCCTGCGCAGTCACCAGATCTCAACATCAA
CGATTTGGGGTTCTATGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGTT
ATGGTACGATAGACGGCCTTGTGAAGGGGGTAAAGAGCATGTACGATTCG
TACGATGCGGTAACCTTAGAGAGGGTACGGCAAAGCCTCTTCCGGTACAA
TCACGCCCTGAAGGCGCTAGGAGGTAACGATTTCGATGTACAGAACATCG
AAACCAGGAAAAGGCAGCGTGCGGGGAGTCTGCCAAAATCGGTCAAAATC
GATTGA
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