prot_H-paniculata_contig1873.4644.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1873.4644.1
Unique Nameprot_H-paniculata_contig1873.4644.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length52
Homology
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: F0YDV4_AURAN (Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDV4_AURAN)

HSP 1 Score: 97.4 bits (241), Expect = 8.880e-26
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0
Query:    1 QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            QPSHKTFRTK TL KK KQNRPIP WIR+RTDNKIR+NAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRTLAKKMKQNRPIPQWIRMRTDNKIRWNAKRRHWRRTKLGL 51          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A1Y1XXG7_9FUNG (60S ribosomal protein L39 n=3 Tax=Fungi incertae sedis TaxID=112252 RepID=A0A1Y1XXG7_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-25
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    2 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            PS K+F+ K  LGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL
Sbjct:    2 PSQKSFKVKRILGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A1Y1YQR8_9FUNG (60S ribosomal protein L39 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YQR8_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 6.370e-25
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    2 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            PS K+F+ K  LGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL
Sbjct:   24 PSQKSFKVKRILGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 73          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A061RNH1_9CHLO (Large subunit ribosomal protein L39e n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNH1_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 1.250e-24
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query:    2 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            PSHKTFRTK TL KKQ+QNRPIP WIR RT+NKIRYNAKRRHWRRTKLG+
Sbjct:   23 PSHKTFRTKRTLAKKQRQNRPIPQWIRFRTNNKIRYNAKRRHWRRTKLGI 72          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A7J7Q6B9_9CHLO (60S ribosomal protein L39 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q6B9_9CHLO)

HSP 1 Score: 94.4 bits (233), Expect = 1.480e-24
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:    2 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            PS KTFRTKV L KK KQNRPIPHWIR RT+NKIRYNAKRRHWRRTKLG+
Sbjct:    2 PSQKTFRTKVKLAKKAKQNRPIPHWIRFRTNNKIRYNAKRRHWRRTKLGI 51          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: H3G5I2_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3G5I2_PHYRM)

HSP 1 Score: 94.0 bits (232), Expect = 2.100e-24
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            QPSHKTFRTK  L KK KQNRPIP WIRLRTDN I+YNAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGL 51          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A225VYY8_9STRA (60S ribosomal protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYY8_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.490e-24
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0
Query:    1 QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            QPSHKTFRTK  L KK KQNRPIP WIRLRTDN I+YNAKRRHWRRTKLGL
Sbjct:   21 QPSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGL 71          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A024TQR4_9STRA (60S ribosomal protein L39 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQR4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.250e-24
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query:    2 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            PSHKTFRTK  L KKQKQNRPIP WIRL+T N IRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKTILAKKQKQNRPIPQWIRLKTGNTIRYNAKRRHWRRTKLGL 51          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A835YZW6_9STRA (Ribosomal protein L39e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.250e-24
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:    2 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            PSHKTFRTK TL  K KQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKRTLAVKLKQNRPIPNWIRLRTDNTIRYNAKRRHWRRTKLGL 51          
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A199VEH0_ANACO (60S ribosomal protein L39 n=45 Tax=cellular organisms TaxID=131567 RepID=A0A199VEH0_ANACO)

HSP 1 Score: 92.8 bits (229), Expect = 6.030e-24
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query:    2 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
            PSHKTFR K+ L KK +QNRPIPHWIR+RTDN IRYNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRIKMKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YDV4_AURAN8.880e-2688.24Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomon... [more]
A0A1Y1XXG7_9FUNG3.620e-2588.0060S ribosomal protein L39 n=3 Tax=Fungi incertae s... [more]
A0A1Y1YQR8_9FUNG6.370e-2588.0060S ribosomal protein L39 n=1 Tax=Basidiobolus mer... [more]
A0A061RNH1_9CHLO1.250e-2486.00Large subunit ribosomal protein L39e n=2 Tax=Tetra... [more]
A0A7J7Q6B9_9CHLO1.480e-2486.0060S ribosomal protein L39 n=1 Tax=Scenedesmus sp. ... [more]
H3G5I2_PHYRM2.100e-2486.27Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A225VYY8_9STRA3.490e-2486.2760S ribosomal protein n=1 Tax=Phytophthora megakar... [more]
A0A024TQR4_9STRA4.250e-2486.0060S ribosomal protein L39 n=2 Tax=Aphanomyces inva... [more]
A0A835YZW6_9STRA4.250e-2488.00Ribosomal protein L39e n=1 Tax=Tribonema minus Tax... [more]
A0A199VEH0_ANACO6.030e-2482.0060S ribosomal protein L39 n=45 Tax=cellular organi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10coord: 1..51
e-value: 6.2E-31
score: 107.9
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 3..50
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..49
e-value: 5.5E-23
score: 80.3
IPR000077Ribosomal protein L39ePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 2..50
NoneNo IPR availablePANTHERPTHR19970:SF24coord: 2..50
NoneNo IPR availablePRODOMPD007914coord: 2..37
e-value: 4.0E-10
score: 148.0
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 30..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1873contigH-paniculata_contig1873:21024..21689 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1873.4644.1mRNA_H-paniculata_contig1873.4644.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1873 21024..22546 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1873.4644.1 ID=prot_H-paniculata_contig1873.4644.1|Name=mRNA_H-paniculata_contig1873.4644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLG
L*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023626Ribosomal_L39e_dom_sf
IPR000077Ribosomal_L39
IPR020083Ribosomal_L39_CS