mRNA_H-paniculata_contig1873.4644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1873.4644.1
Unique NamemRNA_H-paniculata_contig1873.4644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: F0YDV4_AURAN (Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDV4_AURAN)

HSP 1 Score: 96.3 bits (238), Expect = 9.560e-22
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK TL KK KQNRPIP WIR+RTDNKIR+NAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRTLAKKMKQNRPIPQWIRMRTDNKIRWNAKRRHWRRTKLGL 51
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BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A1Y1XXG7_9FUNG (60S ribosomal protein L39 n=3 Tax=Fungi incertae sedis TaxID=112252 RepID=A0A1Y1XXG7_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 3.630e-21
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PS K+F+ K  LGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL
Sbjct:    2 PSQKSFKVKRILGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 51
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BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A1Y1YQR8_9FUNG (60S ribosomal protein L39 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YQR8_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 6.390e-21
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PS K+F+ K  LGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL
Sbjct:   24 PSQKSFKVKRILGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 73
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BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A7J7I911_CAMSI (Uncharacterized protein n=1 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7I911_CAMSI)

HSP 1 Score: 95.5 bits (236), Expect = 9.240e-21
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL*NAPCA 171
            PSHKTF  K  L KK +QNRPIPHWIR+RTDN IRYNAKRRHWRRTKLG+  APC+
Sbjct:    2 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGISTAPCS 57
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BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A061RNH1_9CHLO (Large subunit ribosomal protein L39e n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RNH1_9CHLO)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-20
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK TL KKQ+QNRPIP WIR RT+NKIRYNAKRRHWRRTKLG+
Sbjct:   23 PSHKTFRTKRTLAKKQRQNRPIPQWIRFRTNNKIRYNAKRRHWRRTKLGI 72
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BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A7J7Q6B9_9CHLO (60S ribosomal protein L39 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q6B9_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 1.370e-20
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PS KTFRTKV L KK KQNRPIPHWIR RT+NKIRYNAKRRHWRRTKLG+
Sbjct:    2 PSQKTFRTKVKLAKKAKQNRPIPHWIRFRTNNKIRYNAKRRHWRRTKLGI 51
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BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: H3G5I2_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3G5I2_PHYRM)

HSP 1 Score: 92.8 bits (229), Expect = 1.920e-20
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK  L KK KQNRPIP WIRLRTDN I+YNAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGL 51
[Close]
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A225VYY8_9STRA (60S ribosomal protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYY8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.190e-20
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK  L KK KQNRPIP WIRLRTDN I+YNAKRRHWRRTKLGL
Sbjct:   21 QPSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGL 71
[Close]
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A024TQR4_9STRA (60S ribosomal protein L39 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQR4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.730e-20
Identity = 43/50 (86.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK  L KKQKQNRPIP WIRL+T N IRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKTILAKKQKQNRPIPQWIRLKTGNTIRYNAKRRHWRRTKLGL 51
[Close]
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Match: A0A835YZW6_9STRA (Ribosomal protein L39e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.730e-20
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK TL  K KQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKRTLAVKLKQNRPIPNWIRLRTDNTIRYNAKRRHWRRTKLGL 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1873.4644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YDV4_AURAN9.560e-2288.24Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomon... [more]
A0A1Y1XXG7_9FUNG3.630e-2188.0060S ribosomal protein L39 n=3 Tax=Fungi incertae s... [more]
A0A1Y1YQR8_9FUNG6.390e-2188.0060S ribosomal protein L39 n=1 Tax=Basidiobolus mer... [more]
A0A7J7I911_CAMSI9.240e-2176.79Uncharacterized protein n=1 Tax=Camellia sinensis ... [more]
A0A061RNH1_9CHLO1.210e-2086.00Large subunit ribosomal protein L39e n=2 Tax=Tetra... [more]
A0A7J7Q6B9_9CHLO1.370e-2086.0060S ribosomal protein L39 n=1 Tax=Scenedesmus sp. ... [more]
H3G5I2_PHYRM1.920e-2086.27Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A225VYY8_9STRA3.190e-2086.2760S ribosomal protein n=1 Tax=Phytophthora megakar... [more]
A0A024TQR4_9STRA3.730e-2086.0060S ribosomal protein L39 n=2 Tax=Aphanomyces inva... [more]
A0A835YZW6_9STRA3.730e-2088.00Ribosomal protein L39e n=1 Tax=Tribonema minus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1873contigH-paniculata_contig1873:21024..22546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LSX1
Preferred nameRPL39
KEGG rclassRC00055,RC00523
KEGG koko:K01886,ko:K02924
KEGG ReactionR03652
KEGG Pathwayko00970,ko01100,ko03010,map00970,map01100,map03010
KEGG ModuleM00177,M00179,M00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000184,GO:0000956,GO:0002181,GO:0002227,GO:0002251,GO:0002376,GO:0002385,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019731,GO:0019953,GO:0022414,GO:0022625,GO:0022626,GO:0032501,GO:0032504,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045047,GO:0045087,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048232,GO:0048519,GO:0048609,GO:0050789,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0008@1,KOG0002@2759
Ec32 ortholog descriptionRibosomal protein L39e domain
Ec32 orthologEc-26_001730.1
EC6.1.1.18
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016
Exons2
Model size1013
Cds size156
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1873.4644.1prot_H-paniculata_contig1873.4644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1873 21024..21689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.161629-CDS-H-paniculata_contig1873:21023..211301622929443.161629-CDS-H-paniculata_contig1873:21023..21130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1873 21024..21130 +
1691480863.442303-CDS-H-paniculata_contig1873:21023..211301691480863.442303-CDS-H-paniculata_contig1873:21023..21130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1873 21024..21130 +
1622929443.1825204-CDS-H-paniculata_contig1873:21640..216891622929443.1825204-CDS-H-paniculata_contig1873:21640..21689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1873 21641..21689 +
1691480863.4562972-CDS-H-paniculata_contig1873:21640..216891691480863.4562972-CDS-H-paniculata_contig1873:21640..21689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1873 21641..21689 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.1967857-UTR-H-paniculata_contig1873:21689..225461622929443.1967857-UTR-H-paniculata_contig1873:21689..22546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1873 21690..22546 +
1691480863.4663088-UTR-H-paniculata_contig1873:21689..225461691480863.4663088-UTR-H-paniculata_contig1873:21689..22546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1873 21690..22546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1873.4644.1

>prot_H-paniculata_contig1873.4644.1 ID=prot_H-paniculata_contig1873.4644.1|Name=mRNA_H-paniculata_contig1873.4644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
QPSHKTFRTKVTLGKKQKQNRPIPHWIRLRTDNKIRYNAKRRHWRRTKLG
L*
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mRNA from alignment at H-paniculata_contig1873:21024..22546+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1873.4644.1 ID=mRNA_H-paniculata_contig1873.4644.1|Name=mRNA_H-paniculata_contig1873.4644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1523bp|location=Sequence derived from alignment at H-paniculata_contig1873:21024..22546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCTTCCCACAAGACCTTCCGCACCAAGGTGACTTTGGGCAAGAAGCA
GAAGCAGAACAGGCCGATCCCCCACTGGATTCGCCTGCGGACGGACAACA
AGATCCGGTGAGGAATACATGATCATTCATCAGTCGTGTTAATCAGAATA
TCGGTTGGTCATATTCGTATCAACAATGCCGAGAGATGTTGCCGCGAGAC
TCGAATGGTGGATTCACTTGGCGACGTAGACTTGAATTGCGCCAAATAAC
CAATTATAAAACTGGTGGTGATGTGATGAAGTCTTCAACGTTGTATGAAG
TTGTTGAAGCTGGCATGATGGTCGAGTGTGCCCGAAGGGTGCCTGGACGT
AGACTACCGATGCCAAGTATACTGTTACCGACACTGTCTTCATCGCGAGT
GCCGGTATTGTACAACTCGTTTTTTGCGTTTCTCGTGTGTTTATATAAGG
GAATGCCCACAGTGCACTGTGTGATTCCTTCCGTCCTCGCAGTACTGCCA
CAGGTTGATCTGCGAAGATGTACGTATTGTCGCATCAGGGTTTCTAAATT
TGATCGACATGGCATATATTCTCCCTTGTTGCATGCTTTTCGTTACATCT
GTTGTCCCGCTCTCCAGCTACAACGCTAAGCGCCGCCACTGGCGCCGCAC
AAAGCTCGGCCTCTAAAATGCTCCATGTGCCCGTGGCAAGCTTGAGGAAA
AGGAACACATGGTCCCGAAGAATTGGCTTCGATGCAGTGTTTTAGCGGGT
CGAAGGGAGGGCATGCTTTGTAGAGAACTCCTGCAGTCTTGCATTCCCTA
GGTTTCGCAGGCAGTAAATTGCCCGGTCCGAGTTCGTTGTACCACCTGTG
GTGGGATTGGTCAGCTACCAATGATTCTAAAAACGGAGATCCTAAAATAC
CCGTCTTCTCTTACTGTTATACACGAGTATAATGTGAGAGTTGTTTAAAG
ATGAAATGACTGATGGCATTTGGATATCACGAAAAAGTCTGCTTTTGTTT
CGAGCGTCCTACATGCCTTCACAAGTGTGTTCCTGGAACGCCGAACACAG
CACGTGTGTTCCATGCGTTGAAGAAATTCAACGCGTGCATCCACGACTAC
TCTAGTCGGGATACATGTATATTCGTTCACCATTCAATCTCAAGTTTTTC
CCGTTTTCCACACATGTTCTCGTCGGCTCTCTTTGTACTGGTTTGTCATA
TTCCACAGACATGGTCGTTCATTTAATAATGCGCTACTATTTTTGGCTGA
CAAGTACGCATACAGAATGATTTGGAGAGCCTGCCGTATTAGTAATACAA
AATTATTCGCTGGTTGGGTGTTAGCTTACCCTCAAGTTGTTCCTTTTCTA
AAGTTCCTCGCGATAATATTACAGATCAACTCGGCCCAAAGGGAGGGAGG
AAATAATTCCGTGAGATATTATCGGGAGATGGTGGGACAATGTGCGTCTG
ACGATAAAATATAGTGTTTAATATTCGGAACAGACGACATGAAAAAAACA
GCACGCGGATAAATGATACACAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1873:21024..22546+

>mRNA_H-paniculata_contig1873.4644.1 ID=mRNA_H-paniculata_contig1873.4644.1|Name=mRNA_H-paniculata_contig1873.4644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig1873:21024..22546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCTTCCCACAAGACCTTCCGCACCAAGGTGACTTTGGGCAAGAAGCA
GAAGCAGAACAGGCCGATCCCCCACTGGATTCGCCTGCGGACGGACAACA
AGATCCGCAGCCTTCCCACAAGACCTTCCGCACCAAGGTGACTTTGGGCA
AGAAGCAGAAGCAGAACAGGCCGATCCCCCACTGGATTCGCCTGCGGACG
GACAACAAGATCCGCTACAACGCTAAGCGCCGCCACTGGCGCCGCACAAA
GCTCGGCCTCTAACTACAACGCTAAGCGCCGCCACTGGCGCCGCACAAAG
CTCGGCCTCTAA
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