mRNA_H-paniculata_contig18726.4643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18726.4643.1
Unique NamemRNA_H-paniculata_contig18726.4643.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18726.4643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18726contigH-paniculata_contig18726:2469..4858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size498
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18726.4643.1prot_H-paniculata_contig18726.4643.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18726 2578..4706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.0623739-UTR-H-paniculata_contig18726:2468..25771622929443.0623739-UTR-H-paniculata_contig18726:2468..2577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18726 2469..2577 -
1691480863.3964267-UTR-H-paniculata_contig18726:2468..25771691480863.3964267-UTR-H-paniculata_contig18726:2468..2577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18726 2469..2577 -
1622929443.1173785-UTR-H-paniculata_contig18726:4706..48581622929443.1173785-UTR-H-paniculata_contig18726:4706..4858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18726 4707..4858 -
1691480863.4318538-UTR-H-paniculata_contig18726:4706..48581691480863.4318538-UTR-H-paniculata_contig18726:4706..4858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18726 4707..4858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929443.0794055-CDS-H-paniculata_contig18726:2577..26581622929443.0794055-CDS-H-paniculata_contig18726:2577..2658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18726 2578..2658 -
1691480863.407941-CDS-H-paniculata_contig18726:2577..26581691480863.407941-CDS-H-paniculata_contig18726:2577..2658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18726 2578..2658 -
1622929443.090327-CDS-H-paniculata_contig18726:3490..35651622929443.090327-CDS-H-paniculata_contig18726:3490..3565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18726 3491..3565 -
1691480863.4155-CDS-H-paniculata_contig18726:3490..35651691480863.4155-CDS-H-paniculata_contig18726:3490..3565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18726 3491..3565 -
1622929443.1031172-CDS-H-paniculata_contig18726:4625..47061622929443.1031172-CDS-H-paniculata_contig18726:4625..4706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18726 4626..4706 -
1691480863.4234269-CDS-H-paniculata_contig18726:4625..47061691480863.4234269-CDS-H-paniculata_contig18726:4625..4706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18726 4626..4706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18726.4643.1

>prot_H-paniculata_contig18726.4643.1 ID=prot_H-paniculata_contig18726.4643.1|Name=mRNA_H-paniculata_contig18726.4643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
METKKQNTAKLKFLQRPEVKRAVRVVERVWDRRRRHYIATYGEYIGPKVQ
SAVFLLQRCNGGKSVGKTHHASSILCDK*
back to top

mRNA from alignment at H-paniculata_contig18726:2469..4858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18726.4643.1 ID=mRNA_H-paniculata_contig18726.4643.1|Name=mRNA_H-paniculata_contig18726.4643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2390bp|location=Sequence derived from alignment at H-paniculata_contig18726:2469..4858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGTACTGCATCCCGAAGGGTTTAAGCAGGATATTTCTGCGGTTGTGC
GGCATTCATCACATGCGTTGCAAGACGTTGAATCTGGTCATCATTTGCCA
CCATTTAATGAAACCCAGTTTCCCTGTGCAAACGTTTAATTATTAGGCGG
AAATGGAAACAAAGAAGCAGAATACCGCAAAGCTCAAATTCCTCCAACGG
CCGGAAGTCAAACGAGCAGTACGTGTCGTTGAGGTACGAAGATATACAAG
CATTGGTTCCACGAGATGTACTTCGAGAAAGGTAGTAGCTGCTCCGATAT
CGTGCGGACTTACATATATTGATGTTTCCTAACCAAGGCAGACACTGATA
ACCTGTGCAGCTCTATACCCGCTGAACCTTTCCTGCTCACTTGCATATCA
ACTTATCTTATATCTAGCTTGCCTCACGTCCGATTCTTTCGATTTAAGTA
AGCTATTCGAAATTGAGGAGTTTTCTGCGTTGTTTCTATTCCAATCGTCC
CAACCAACGGACACGATGTGAGTGTCGTCGCGATCAGCCCAACGTACCCC
CCTCTGTTTGATGGTCGCCGACGTTTCAGCTGCACTAGAGCGCAAGCTCA
GGTCGACACACAACGTATTGCAGTTTCTTGTCTCAATCTACAGTAGGTGA
TCATAGTACATACTGTGACTCCCGAGAACACCTTAATGCATGGCATACTC
TAGGCGCCGAAGTATTTCCCATGAAGTGCGTTGTTTATAGCGTATCCAAG
GAGATCACTCATGAAATCAGGGAGCAACCACGCCATCTAAGCTGCTGTAT
GTACTATAAGCGCCAGTAACGCATGAAAACTAAGGGGGGACGGGGGTCTG
TGCAGCGTGAGGGATACATCCCCTGAAAACCCAATTAACTGCGAGTTCAA
CGGACATTTGAAATACTGTATATTTTCCCGACAATTCGGTTCCCGAAAAA
AAGTGTAGCTGATACAGATCATAATTAGGTGTCGCCGCCAACCTTGCACC
TATGTGACATGGTGAATACTTTCTCGAAAATCATCGAACCGGAACCTCCG
AATATGCTCTGCTTTCTTAAGTCAAGCGACACCCTTCCCATGGAGGGAAT
GGGTTGAAACCCACATGCCGTCAGTTGCAAGACTGTCTGAATCCTTAAGT
AGAAAGATCCGCAAATGACCAGACATAAAACATTTACGGTTTGTTACGTT
TAATGCCTCGGCAGTCGAGCATGTTTGCCCGCCCCCCTCTCCTCTCGCTT
ACATCGACTCCATGCCCCCCTGACGTTCTCTCTGCTGCTGCAGCGCGTTT
GGGATCGACGGAGACGCCATTACATTGCCACCTACGGCGAGTACATCGGA
CCTAAGGTACAAAGTGCGGTTTCGTGTTACTAGTGAGGGCGAAAATAGAA
GAAGCAGATTTGTTTTTCATTAGTTGAGTTCCTCCCACCGTGGGTAGTCT
TTATCCTCGTGGTCCAACCTCGACGACACGACGCCGAGACCACGCGTGCC
CCGTACGAAGAATTTGCATTATTTGCGCTACTACATCTAAGGGGTTCGGA
TATTCCATCGCCGGCATGTCGCATTAATTCCGTGGTCGGATACTTACAGA
TTTAGCTTTGTTTTGGCGCTTGCGTATGCCATGGTAAATTCGTTTGCCGA
ACTTTCCAAAGAAATGAACCCTGCCGATGTGATCCTCCATACTCTTTTTG
TAGTGAGCCGGGTCAATGTATTTTCGAATAGGAAAACAACGAATGCCTTT
AACTCTTTCTTTCTTCGATCTTTTTCAATCGCGCGGAATGATTCAGGCAA
TGTTGCTCCGAGAAGCACAACAGGAACATGTTGATCGACAAAAAAGCAGT
TTTAAATTGTCGAACGCGTGGAGTGGGGTGTTGCGAGATAGAGCAGTATT
AAATCAGAGTGGCCTCGAAGGGTCCGATCTTGTGCTATCAGTCACCGAAG
GCAGTTTTAATTTTCCGCTGCCCGTGGGGTGGGAAGAGACGCAAGATGAA
AATGGAAGGTGAGATTCACCGGCGTTACTGCTATGCGCGAACAGGCGGTG
ACAGCGATATGATGTACTTTGCACTCAAGACTCCGTATTCTATGCACAAA
ATCAAGCTTGGACCGTGAAAAGTCGCAAACATGTAAGAGAATTCGGCATC
GTTACTAATATCACTGCACTGCATGTTATGCGGTTCCACTTATGCCCCAG
GTGTTTCTACTACAACGCTGTAACGGCGGTAAGTCAGTGGGAAAGACCCA
CCACGCCAGCAGCATTCTTTGCGACAAATGATGGTGAACAAACGACTCAA
TTGGGTCCTTCCTACCACGACAATCACCACTCAGATGCCGAAGGCTCTAT
TAAAGATGGTTACATTGCACCCTGCGATGGAAATGATGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18726:2469..4858-

>mRNA_H-paniculata_contig18726.4643.1 ID=mRNA_H-paniculata_contig18726.4643.1|Name=mRNA_H-paniculata_contig18726.4643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig18726:2469..4858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAACAAAGAAGCAGAATACCGCAAAGCTCAAATTCCTCCAACGGCC
GGAAGTCAAACGAGCAGTACGTGTCGTTGAGATGGAAACAAAGAAGCAGA
ATACCGCAAAGCTCAAATTCCTCCAACGGCCGGAAGTCAAACGAGCAGTA
CGTGTCGTTGAGCGCGTTTGGGATCGACGGAGACGCCATTACATTGCCAC
CTACGGCGAGTACATCGGACCTAAGGTACAAAGTGCGCGCGTTTGGGATC
GACGGAGACGCCATTACATTGCCACCTACGGCGAGTACATCGGACCTAAG
GTACAAAGTGCGGTGTTTCTACTACAACGCTGTAACGGCGGTAAGTCAGT
GGGAAAGACCCACCACGCCAGCAGCATTCTTTGCGACAAATGAGTGTTTC
TACTACAACGCTGTAACGGCGGTAAGTCAGTGGGAAAGACCCACCACGCC
AGCAGCATTCTTTGCGACAAATGA
back to top