mRNA_H-paniculata_contig18725.4640.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18725.4640.1
Unique NamemRNA_H-paniculata_contig18725.4640.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: A0A7S2WSV1_9STRA (Sulfhydryl oxidase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSV1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.040e-9
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEA-----EVEDKSLWPQAATCPQC 276
            C+ CR+HFL+M++    G  +I                RS      LALWLWR HN VN+R+A +S    A  ++     E++  +LWP    CP C
Sbjct:  345 CSHCRQHFLQMFDECWGGRCDIGDD-------------RSEESQRALALWLWRAHNTVNSRVAVESAELAASPDSPLVAPELQAWALWPSTELCPAC 428          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: A0A8C2V6C1_CHILA (Sulfhydryl oxidase n=3 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2V6C1_CHILA)

HSP 1 Score: 60.8 bits (146), Expect = 2.190e-8
Identity = 41/118 (34.75%), Postives = 48/118 (40.68%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCWNGYSEAESQPPWHENNVVEFLKATY 354
            C EC +HF EM            S  A+  A Q               LWLWR HNAVN+RLA         +E     K LWP    CP C   + E +    WHE  V+ FLK  Y
Sbjct:  466 CQECGQHFEEM---------AAESLDAVKTADQAV-------------LWLWRRHNAVNSRLAGQL------SEDPKFPKVLWPTPDLCPAC---HEEIKGLDSWHEGQVLAFLKQHY 552          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: A0A7S2Y5C4_9STRA (Sulfhydryl oxidase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5C4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.960e-8
Identity = 36/119 (30.25%), Postives = 53/119 (44.54%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKA-EAEVEDKSLWPQAATCPQCWNGYSEAESQPPWHENNVVEFLKATY 354
            C ECR +F+  Y   D  + +   +   A      +    +   ++L LWL+ THNAVN RL K+      +A   + E  S WP    CP+CW           W + NV +FL+  Y
Sbjct:   35 CNECRLNFVNAY---DQCMFDRCHRLKEADDPSAEQTQEEW---MELPLWLFETHNAVNLRLMKEKATREKRAWNHQDEVNSRWPSTEDCPRCWR------EDGAWDDLNVYKFLRTEY 141          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: A0A7S2V2Z3_9STRA (Sulfhydryl oxidase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Z3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.320e-8
Identity = 33/117 (28.21%), Postives = 48/117 (41.03%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCWNGYSEAESQPPWHENNVVEFLKAT 351
            C  CR HF+E ++       +I  ++                 D +L LWLWR HN VN R A+  G      E E   + LWP    CPQC        S   W++  V+  ++ +
Sbjct:   28 CRHCRDHFMEGHKSCKFRQCDIREEE---------------EDDQELVLWLWRVHNDVNERTARQKG-----VEDEELPRHLWPAEIHCPQC-RDQVHPNSTVSWNQGQVLRHIQTS 123          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: UPI00034FF448 (sulfhydryl oxidase 2 isoform X1 n=2 Tax=Heterocephalus glaber TaxID=10181 RepID=UPI00034FF448)

HSP 1 Score: 58.5 bits (140), Expect = 1.430e-7
Identity = 39/118 (33.05%), Postives = 49/118 (41.53%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCWNGYSEAESQPPWHENNVVEFLKATY 354
            C EC +HF EM                   AT+     ++     Q  LWLWR+HNAVN+RLA         +E     K  WP    CP C   + E +    WHE  V+ FLK  Y
Sbjct:  469 CRECGQHFEEM-------------------ATESLDSVKTAD---QAVLWLWRSHNAVNSRLAGQL------SEDPKFPKVPWPTPDLCPAC---HEEIKGLDSWHEGQVLAFLKRHY 555          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: A0A6P6D7E9_OCTDE (Sulfhydryl oxidase n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6D7E9_OCTDE)

HSP 1 Score: 58.5 bits (140), Expect = 1.430e-7
Identity = 39/118 (33.05%), Postives = 47/118 (39.83%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCWNGYSEAESQPPWHENNVVEFLKATY 354
            C EC +HF EM          + S   +  A Q               LWLWR HNAVN+RLA         +E     K  WP    CP C   + E +    WHE  V+ FLK  Y
Sbjct:  462 CEECGQHFEEM---------AVESLDTVKTADQAV-------------LWLWRRHNAVNSRLAGQL------SEDPKFPKVPWPTPDLCPAC---HEEVKGLDSWHEGQVLAFLKQHY 548          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: A0A5N6Q2L0_9ASTR (Sulfhydryl oxidase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q2L0_9ASTR)

HSP 1 Score: 58.2 bits (139), Expect = 1.890e-7
Identity = 35/120 (29.17%), Postives = 47/120 (39.17%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCWNG--YSEAESQPPWHENNVVEFLKATY 354
            C ECR+HF  M                       +R + S+       LWLW +HN VNTRL K       K       K+ WP    CP C+N    +E  +   W+ + V +FL   Y
Sbjct:  353 CEECREHFYNMC----------------------SRVSSSFSSTRDFVLWLWTSHNEVNTRLKKTEES--LKTGDPKFPKTTWPTKHLCPACYNNPNQNEESNSIDWNRDEVFKFLTGYY 448          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: A0A2P6VDM8_9CHLO (Sulfhydryl oxidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VDM8_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 2.020e-7
Identity = 39/121 (32.23%), Postives = 52/121 (42.98%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCW--NGYSEAESQP-PWHENNVVEFLKATY 354
            C  C KHF+                    A+++EA   R  R  V   LW+WRTHN VN RLA +   G +KA+        +P A  CP C   +G   A+ +  PW E  +  FL   Y
Sbjct:  377 CTACAKHFVRH------------------ASSEEAAAVRLRRDAV---LWMWRTHNIVNRRLAAEDKAGPSKADP-ASPHEQFPPAELCPGCRKADGQGPAKDEAVPWDEEEIYAFLLDYY 475          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: H0VLJ8_CAVPO (Sulfhydryl oxidase n=1 Tax=Cavia porcellus TaxID=10141 RepID=H0VLJ8_CAVPO)

HSP 1 Score: 57.4 bits (137), Expect = 3.630e-7
Identity = 38/118 (32.20%), Postives = 50/118 (42.37%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCWNGYSEAESQPPWHENNVVEFLKATY 354
            C EC +HF                 +A+AA + +     + +   Q  LWLWR HNAVN+RLA         +E     K  WP    CP C   + E +    WHE  V+ FLK  Y
Sbjct:  469 CQECGQHF-----------------EAMAAESLD-----TVKTPDQAVLWLWRRHNAVNSRLAGQL------SEDPKFPKVPWPTPDLCPAC---HEEIKGLDSWHEGQVLAFLKQHY 555          
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Match: UPI001FB0AA0B (sulfhydryl oxidase 2-like isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0AA0B)

HSP 1 Score: 55.5 bits (132), Expect = 1.660e-6
Identity = 38/122 (31.15%), Postives = 53/122 (43.44%), Query Frame = 1
Query:    1 CAECRKHFLEMYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNTRLAK---DSGGGVAKAEAEVEDKSLWPQAATCPQCWNGYSEAESQP-PWHENNVVEFLKATY 354
            C ECR+HF EM                    +  + P ++ R     +LWLW THN VN+RL +     G G  K       K+ WP    CP C+   SE ++    W+E+ V +FL   Y
Sbjct:  348 CEECRQHFHEM-------------------CSSVSTPFKTTR---DFSLWLWSTHNKVNSRLMEVEESLGTGDPKFP-----KTQWPTKQLCPSCYLSSSEKKNDGVQWNEDEVFKFLVNYY 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18725.4640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WSV1_9STRA6.040e-934.02Sulfhydryl oxidase (Fragment) n=1 Tax=Rhizochromul... [more]
A0A8C2V6C1_CHILA2.190e-834.75Sulfhydryl oxidase n=3 Tax=Chinchilla lanigera Tax... [more]
A0A7S2Y5C4_9STRA2.960e-830.25Sulfhydryl oxidase n=1 Tax=Amphiprora paludosa Tax... [more]
A0A7S2V2Z3_9STRA5.320e-828.21Sulfhydryl oxidase (Fragment) n=1 Tax=Fibrocapsa j... [more]
UPI00034FF4481.430e-733.05sulfhydryl oxidase 2 isoform X1 n=2 Tax=Heteroceph... [more]
A0A6P6D7E9_OCTDE1.430e-733.05Sulfhydryl oxidase n=1 Tax=Octodon degus TaxID=101... [more]
A0A5N6Q2L0_9ASTR1.890e-729.17Sulfhydryl oxidase n=1 Tax=Mikania micrantha TaxID... [more]
A0A2P6VDM8_9CHLO2.020e-732.23Sulfhydryl oxidase n=1 Tax=Micractinium conductrix... [more]
H0VLJ8_CAVPO3.630e-732.20Sulfhydryl oxidase n=1 Tax=Cavia porcellus TaxID=1... [more]
UPI001FB0AA0B1.660e-631.15sulfhydryl oxidase 2-like isoform X1 n=2 Tax=Impat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18725contigH-paniculata_contig18725:1201..1554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3.7e-14
Seed eggNOG ortholog2880.D7G5C1
Preferred nameQSOX
KEGG koko:K10758
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol oxidase activity
EggNOG OGsKOG1731@1,KOG1731@2759
Ec32 ortholog descriptionERV/ALR sulfhydryl oxidase domain
Ec32 orthologEc-14_006970.1
EC1.8.3.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size354
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929442.8555515-UTR-H-paniculata_contig18725:1200..12301622929442.8555515-UTR-H-paniculata_contig18725:1200..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18725 1201..1230 +
1691480863.3197703-UTR-H-paniculata_contig18725:1200..12301691480863.3197703-UTR-H-paniculata_contig18725:1200..1230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18725 1201..1230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929442.8778272-CDS-H-paniculata_contig18725:1230..15541622929442.8778272-CDS-H-paniculata_contig18725:1230..1554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18725 1231..1554 +
1691480863.3302512-CDS-H-paniculata_contig18725:1230..15541691480863.3302512-CDS-H-paniculata_contig18725:1230..1554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18725 1231..1554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18725.4640.1prot_H-paniculata_contig18725.4640.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18725 1231..1554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18725.4640.1

>prot_H-paniculata_contig18725.4640.1 ID=prot_H-paniculata_contig18725.4640.1|Name=mRNA_H-paniculata_contig18725.4640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MYEGGDNGLLEIPSKQALAAATQEARPARSYRGDVQLALWLWRTHNAVNT
RLAKDSGGGVAKAEAEVEDKSLWPQAATCPQCWNGYSEAESQPPWHENNV
VEFLKATY
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mRNA from alignment at H-paniculata_contig18725:1201..1554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18725.4640.1 ID=mRNA_H-paniculata_contig18725.4640.1|Name=mRNA_H-paniculata_contig18725.4640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig18725:1201..1554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGCCGAGTGTCGGAAGCATTTCCTTGAAATGTACGAGGGAGGAGACAA CGGACTACTAGAGATCCCCTCCAAGCAGGCCCTGGCCGCCGCCACACAAG AAGCCCGCCCCGCGCGCTCTTACCGCGGGGACGTGCAGCTCGCGCTATGG CTGTGGCGGACCCACAACGCCGTGAACACTCGTCTGGCGAAAGACTCGGG GGGCGGCGTAGCCAAGGCCGAGGCTGAAGTAGAGGACAAGAGCCTGTGGC CCCAGGCCGCGACGTGTCCCCAGTGCTGGAACGGGTACTCAGAGGCCGAG AGTCAGCCACCGTGGCATGAGAACAATGTGGTCGAATTCCTCAAGGCCAC ATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig18725:1201..1554+

>mRNA_H-paniculata_contig18725.4640.1 ID=mRNA_H-paniculata_contig18725.4640.1|Name=mRNA_H-paniculata_contig18725.4640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig18725:1201..1554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGAGGGAGGAGACAACGGACTACTAGAGATCCCCTCCAAGCAGGC
CCTGGCCGCCGCCACACAAGAAGCCCGCCCCGCGCGCTCTTACCGCGGGG
ACGTGCAGCTCGCGCTATGGCTGTGGCGGACCCACAACGCCGTGAACACT
CGTCTGGCGAAAGACTCGGGGGGCGGCGTAGCCAAGGCCGAGGCTGAAGT
AGAGGACAAGAGCCTGTGGCCCCAGGCCGCGACGTGTCCCCAGTGCTGGA
ACGGGTACTCAGAGGCCGAGAGTCAGCCACCGTGGCATGAGAACAATGTG
GTCGAATTCCTCAAGGCCACATACATGTACGAGGGAGGAGACAACGGACT
ACTAGAGATCCCCTCCAAGCAGGCCCTGGCCGCCGCCACACAAGAAGCCC
GCCCCGCGCGCTCTTACCGCGGGGACGTGCAGCTCGCGCTATGGCTGTGG
CGGACCCACAACGCCGTGAACACTCGTCTGGCGAAAGACTCGGGGGGCGG
CGTAGCCAAGGCCGAGGCTGAAGTAGAGGACAAGAGCCTGTGGCCCCAGG
CCGCGACGTGTCCCCAGTGCTGGAACGGGTACTCAGAGGCCGAGAGTCAG
CCACCGTGGCATGAGAACAATGTGGTCGAATTCCTCAAGGCCACATAC
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