mRNA_H-paniculata_contig18724.4638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18724.4638.1
Unique NamemRNA_H-paniculata_contig18724.4638.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig18724.4638.1 vs. uniprot
Match: D7G8I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I0_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.630e-32
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 2 
Query:    2 IQYGDYTELLDYESANSFLLFQTWQQAMERSGAAIRRASTNPSQDADLALAPPGDPLTVLGKFSIVAMG 208
            +QYGDYTELLDYESA+SFLLFQTWQQAMERSGAAI+R+STNPSQDADL LAPPG PLTVLGKFSI AMG
Sbjct:  581 VQYGDYTELLDYESADSFLLFQTWQQAMERSGAAIKRSSTNPSQDADLTLAPPGSPLTVLGKFSIAAMG 649
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18724.4638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8I0_ECTSI3.630e-3289.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18724contigH-paniculata_contig18724:3230..4055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929442.6154191-CDS-H-paniculata_contig18724:3229..33621622929442.6154191-CDS-H-paniculata_contig18724:3229..3362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18724 3230..3362 +
1691480863.2255132-CDS-H-paniculata_contig18724:3229..33621691480863.2255132-CDS-H-paniculata_contig18724:3229..3362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18724 3230..3362 +
1622929442.6393077-CDS-H-paniculata_contig18724:3978..40551622929442.6393077-CDS-H-paniculata_contig18724:3978..4055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18724 3979..4055 +
1691480863.2363245-CDS-H-paniculata_contig18724:3978..40551691480863.2363245-CDS-H-paniculata_contig18724:3978..4055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18724 3979..4055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18724.4638.1prot_H-paniculata_contig18724.4638.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18724 3230..4055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18724.4638.1

>prot_H-paniculata_contig18724.4638.1 ID=prot_H-paniculata_contig18724.4638.1|Name=mRNA_H-paniculata_contig18724.4638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
DTVRRLHRAARLRVCELVSVVPDMATSHGKERSRDQKSFHEPFTGCRSCI
GASRRSVDRPRQIQHRGYG*
back to top

mRNA from alignment at H-paniculata_contig18724:3230..4055+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18724.4638.1 ID=mRNA_H-paniculata_contig18724.4638.1|Name=mRNA_H-paniculata_contig18724.4638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=826bp|location=Sequence derived from alignment at H-paniculata_contig18724:3230..4055+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATACAGTACGGCGACTACACCGAGCTGCTCGACTACGAGTCTGCGAACT
CGTTTCTGTTGTTCCAGACATGGCAACAAGCCATGGAAAGGAGCGGAGCC
GCGATCAGAAGAGCTTCCACGAACCCTTCACAGGCAAACGACACCTGTTG
GAATTGTCGAACGGCTGGAGGGGTTTTCGGGCACAGACCAAATGGTTTAT
GTTGCACATATGTGACCTGTTTATCTATGTTTCCATGATCGCAGAGGTCG
AACTGTTTTTCGTATACGGAAGATTGCAATGGTACTGTTATATCAAGGCC
GAACCTTTGACGATCGACATTAGAGTTAGAGTATGTGGTGCTGCCTTCCC
GACCGAAGAGAAATGAGCGAAACTGACCGTACAGTAAAAGTGGCCGTACA
ACCACCAGACCACAAAAAACGCGCGTGTTAAGGGTCATTCCTAAAACGGA
AATTTGCCAATTTTGAGATTCTCGACCTTTCAAGTAAGAGCCAAAATTTA
CCCAACAGAAGTGTCAACCATTTTTTCGTCCAGTACTTATACAAACAAGG
GGAAAGTTATACATATTTTCGCATATTTTGGCTCTTAATTGAGCGTCCGA
AAATCTAATATATGACAAAGTTCCGTTTTTCCGCCAAAACACGCGCTTCC
TAAGAATGACCCTAACTCCGCTCGACGCCGTCGGAGTGCACGATGATCAT
CTTCATCGATTGTCCGCGTTTCACATGTAACATTTGGACGATTACACAGG
ATGCAGATCTTGCATTGGCGCCTCCCGGAGATCCGTTGACCGTCCTCGGC
AAATTCAGCATCGTGGCTATGGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18724:3230..4055+

>mRNA_H-paniculata_contig18724.4638.1 ID=mRNA_H-paniculata_contig18724.4638.1|Name=mRNA_H-paniculata_contig18724.4638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig18724:3230..4055+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATACAGTACGGCGACTACACCGAGCTGCTCGACTACGAGTCTGCGAACT
CGTTTCTGTTGTTCCAGACATGGCAACAAGCCATGGAAAGGAGCGGAGCC
GCGATCAGAAGAGCTTCCACGAACCCTTCACAGGATACAGTACGGCGACT
ACACCGAGCTGCTCGACTACGAGTCTGCGAACTCGTTTCTGTTGTTCCAG
ACATGGCAACAAGCCATGGAAAGGAGCGGAGCCGCGATCAGAAGAGCTTC
CACGAACCCTTCACAGGATGCAGATCTTGCATTGGCGCCTCCCGGAGATC
CGTTGACCGTCCTCGGCAAATTCAGCATCGTGGCTATGGGTGAGATGCAG
ATCTTGCATTGGCGCCTCCCGGAGATCCGTTGACCGTCCTCGGCAAATTC
AGCATCGTGGCTATGGGTGA
back to top