mRNA_H-paniculata_contig1872.4636.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: A0A6H5KFU2_9PHAE (Sin3a_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU2_9PHAE) HSP 1 Score: 252 bits (644), Expect = 4.360e-69 Identity = 143/242 (59.09%), Postives = 175/242 (72.31%), Query Frame = 2
Query: 8 GDGAVG-EKGSRLPKTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMA--KSP-------------KGEALRGYDGFLALLYAFMEQPASTEHKLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQGTFAPAKYMEECRKVFNGKMDNLYRLQWSQAGESS-------AG---GPSLLMEQIVPSN 655
G GA G E G LP++ER+L+CTQELYVLMR+HHVLC+R+GKAV+LAE AKALKA QK+HPQNP +RE +T+EEKL R+LG+ SP KG LRGY GFLALLYAF +Q +++E KLE+A+QL+VGNE YMLF+ DKVI FLRQLK VV+D S KMLQLF+ QAA G F PA+ + ECRKV K+DNL+RLQWS A SS AG G SLL+E +VP++
Sbjct: 491 GGGARGAEAGPVLPESERVLLCTQELYVLMRIHHVLCDRLGKAVKLAEDAKALKAGQKDHPQNPIIRESCETDEEKLMRSLGLGGGDSPLAFSLAPPPSSDGKGGGLRGYSGFLALLYAFTDQ-SNSELKLEDAVQLTVGNEAYMLFSYDKVINAFLRQLKLVVDDDSSLKMLQLFEHQAALGAFQPARLLSECRKVLKSKVDNLFRLQWSTAPSSSXXXXXSTAGEDEGASLLIELVVPNS 731
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: D7G0X2_ECTSI (HDAC_interact domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X2_ECTSI) HSP 1 Score: 240 bits (613), Expect = 7.010e-64 Identity = 136/244 (55.74%), Postives = 169/244 (69.26%), Query Frame = 2
Query: 5 RGDGAVGEKGSRLPKTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAK--SP-------------KGEALRGYDGFLALLYAFMEQPASTEHKLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQGTFAPAKYMEECRKVFNGKMDNLYRLQWSQA------------GESSAGGPSLLMEQIVPSN 655
RG GA G LP++ER+L+CTQELYVLMR+HHVLC+R+GKAV+LAE AKALKA QK+HPQNP +RE +T+EEK+ R+LG+ SP KG LRGY GFLALLYAF +Q +++E KLE+A+QL+VGNE YMLF+ DKVI FLRQLK VV+D S KMLQLF+ QAA G F PA+ + ECRKV K+DNL+RLQWS A SLL+E +VP++
Sbjct: 899 RGAGA----GPVLPESERVLLCTQELYVLMRIHHVLCDRLGKAVKLAEDAKALKAGQKDHPQNPIIRESCETDEEKVMRSLGLGVGGSPPASSGAXXXSSHGKGGGLRGYSGFLALLYAFTDQ-SNSELKLEDAVQLTVGNEAYMLFSYDKVINAFLRQLKLVVDDDSSLKMLQLFEHQAALGAFQPARLLSECRKVLKSKVDNLFRLQWSTAPXXXXXXXXXXXXXXXXXXASLLIELVVPNS 1137
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: A0A7S2D3V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3V2_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.720e-15 Identity = 61/199 (30.65%), Postives = 104/199 (52.26%), Query Frame = 2
Query: 26 EKGSRLPKTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAKSPKGEALR----------GYDGFLALLYAFMEQPASTEHKLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQGT-FAPAKYMEECRKVFNGKMDNLYRLQW 589
E G LP+T ++L TQ LYV +RLH +L +R+ +A L+E + A + EHP V+E +EEK+++A G + ++L GY GF LLYA + + E+ + +G++ Y L T+DK+IG ++ L+ +V D K+ L++ + +Q T PA+Y+ + + L+R Q+
Sbjct: 54 EAGEALPETTQMLFGTQTLYVFLRLHEMLYQRLCQAKELSEAGRGPGAIE-EHPVKALVKEDR-VDEEKMTQA-GEDEGTSSDSLEEEDVKPHLKNGYKGFRWLLYAMLSGDLELQ-AYEDYCRQMIGSDSYRLCTMDKLIGSVVKTLQQLVHDKSFTKLAALYQWERSQPTGLCPARYLCHTKHLLKRSPTELFRAQY 248
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 4.160e-14 Identity = 68/225 (30.22%), Postives = 105/225 (46.67%), Query Frame = 2
Query: 2 GRGDGAVGEKGSRLPKTERLLMCTQELYVLMRLHHVLCE-----------RMGKAVRLAEGAKALKAQQKEHPQNPT-------VREGADTEEEKLSRALGM-AKSPKGEALRGYDGFLALLYAFMEQPASTEH---KLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQ----GTFAPAKYMEECRKVFNGKMDNLYRLQWSQA 598
G G G GE G +P +E LL+ TQELY+L+R+H ++ + +M A E A +A+ HP L+++LG+ A + E L Y GFLA K E+ +Q +GNE + LF+LDK + RQLK+V +D S ++L+L++ Q AQ G + Y G+ D++YRLQ+++A
Sbjct: 1079 GEGGGEGGEAGVMVPLSESLLLATQELYLLLRVHWMVADSYAYALRAVVAKMAAARHFCEAAALRRARACRHPMKAAGDAAPVXXXXXXXXXXXXLAQSLGLRASALPAEGLCSYPGFLARAAXXXXXXXXXXXEALKFEDYVQGVLGNEAFALFSLDKQVQTLARQLKAVADDPMSSRLLELWRYQRAQAKPAGALRLSAYRANVGHFLRGRSDDVYRLQFTRA 1303
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 4.140e-12 Identity = 59/205 (28.78%), Postives = 100/205 (48.78%), Query Frame = 2
Query: 41 LPKTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAKSPKGEALRGYDGFLALLYAFMEQPASTEHKLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQGT--FAPAKYMEECRKVFNGKMDNLYRLQWSQAGESSAGG----PSLLME 637
LP+ + ++ T + Y+++R+HH+L ER+ +A +L A + PQ +R A + A K E GY FL LY +E+ +TE + EE ++ VGN+GY+L +LDK++ G L+ L D K+ QL+ + T PA Y +++ + + R+Q+ + +GG P+L ME
Sbjct: 991 LPQGQEVMFTTTDFYLVLRMHHLLAERLAEAKKLCSEAGLSRQTVVASPQE-VLRASAGV----TGTGMHAANGDKEEI--GYKTFLGHLYDLLEEKINTE-RYEEGVRQLVGNQGYVLCSLDKLVVGLLQNLYRASADKVFHKLTQLYYYERTTQTEGVVPAIYRGHVQELLSRSEKEVVRVQYHPGAQKPSGGWLLEPALKME 1187
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: A0A7S1BCU2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCU2_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.420e-10 Identity = 55/191 (28.80%), Postives = 100/191 (52.36%), Query Frame = 2
Query: 41 LPKTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAKSPKGEALRGYDGFLALLYAFME-QPASTEH-KLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQGTFAPAKYMEECRKVFNGKMDNLYRLQWSQAGES 607
L + +L+ TQ LY+ +RLHH+L ER+ KA AEG + P + G + EK R L ++ G+ YD +L++LY ++ AS E+ + EE ++ +GN+ L+T+DK+I L+ L+++ D +M+Q+++ A G F P + +E + D++Y Q+ + ++
Sbjct: 289 LSERSQLMFGTQSLYLFLRLHHLLVERLAKARSYAEGRGG-----EVQVVTPGLALGTASPVEK--RLLEDTRTEYGQ--ERYDAYLSILYGLVDGHNASGENLRYEEKVRSLLGNDSCELYTMDKLINHTLKHLQAMSSDETFSQMVQVYRRHAKTGVFKPTAFRQEIATL---SYDDVYAFQFCKVKDA 467
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: A0A7S1BBZ8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBZ8_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.120e-10 Identity = 55/191 (28.80%), Postives = 100/191 (52.36%), Query Frame = 2
Query: 41 LPKTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAKSPKGEALRGYDGFLALLYAFME-QPASTEH-KLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQGTFAPAKYMEECRKVFNGKMDNLYRLQWSQAGES 607
L + +L+ TQ LY+ +RLHH+L ER+ KA AEG + P + G + EK R L ++ G+ YD +L++LY ++ AS E+ + EE ++ +GN+ L+T+DK+I L+ L+++ D +M+Q+++ A G F P + +E + D++Y Q+ + ++
Sbjct: 578 LSERSQLMFGTQSLYLFLRLHHLLVERLAKARSYAEGRGG-----EVQVVTPGLALGTASPVEK--RLLEDTRTEYGQ--ERYDAYLSILYGLVDGHNASGENLRYEEKVRSLLGNDSCELYTMDKLINHTLKHLQAMSSDETFSQMVQVYRRHAKTGVFKPTAFRQEIATL---SYDDVYAFQFCKVKDA 756
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: A0A565B3B8_9BRAS (HDAC_interact domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B3B8_9BRAS) HSP 1 Score: 72.4 bits (176), Expect = 2.360e-9 Identity = 54/194 (27.84%), Postives = 91/194 (46.91%), Query Frame = 2
Query: 77 ELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAKSPKGEALRGYDGFLALLYAFMEQPASTEHKLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQ--GTFAPAKYMEECRKVFNGKMDNLYRLQWSQAGESSAGGPSLLMEQIVPS 652
+ YVL RLH +L ER+ A R G++ L S +++ Y F +LY ++ A K E+ + +GN+ Y+LFTLDK+I ++QL+++V D K+LQL++ + ++ G + Y E R + + +N+YRL+WS + PS L Q++ S
Sbjct: 1101 DFYVLFRLHQILYERILSAKRNCSGSE-----------------------------LESKSSKDTDSVDPYARFTRVLYGLLDGSADNT-KFEDECRAIIGNQSYVLFTLDKLIYKLVKQLQAIVADDMDNKLLQLYEYEKSRKSGKVIDSVYYENARVLLH--EENIYRLEWSSS-------PSRLSIQLMDS 1255
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: A0A540L7I1_MALBA (HDAC_interact domain-containing protein n=3 Tax=Malus TaxID=3749 RepID=A0A540L7I1_MALBA) HSP 1 Score: 72.4 bits (176), Expect = 2.410e-9 Identity = 57/204 (27.94%), Postives = 93/204 (45.59%), Query Frame = 2
Query: 47 KTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAKSPKGEALRGYDGFLALLYAFMEQPASTEHKLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQ--GTFAPAKYMEECRKVFNGKMDNLYRLQWSQAGESSAGGPSLLMEQIVPS 652
K R+ YVL RLH +L ER+ A + GA+ + S G + YD F++ LY ++ K E+ + +GN+ Y+LFTLDK+I F++QL++V D K+LQL++ + ++ G + Y E R + + +N+YRL++S A PS L Q++ S
Sbjct: 1179 KDSRVFYGNDNFYVLYRLHQILYERILSAKTSSTGAE-----------------------------MKWRTSKDGSSPDLYDRFMSALYNLLDGSVDNA-KFEDECRAIIGNQSYILFTLDKLIYKFVKQLQTVASDETDNKLLQLYEYEKSRKTGKLIDSVYHENARVLIH--EENIYRLEFSSA-------PSRLSIQLMDS 1343
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Match: UPI000901703E (paired amphipathic helix protein Sin3-like 1 n=4 Tax=Camelina sativa TaxID=90675 RepID=UPI000901703E) HSP 1 Score: 72.0 bits (175), Expect = 3.100e-9 Identity = 57/204 (27.94%), Postives = 96/204 (47.06%), Query Frame = 2
Query: 47 KTERLLMCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGADTEEEKLSRALGMAKSPKGEALRGYDGFLALLYAFMEQPASTEHKLEEAIQLSVGNEGYMLFTLDKVIGGFLRQLKSVVEDSCSFKMLQLFKVQAAQ--GTFAPAKYMEECRKVFNGKMDNLYRLQWSQAGESSAGGPSLLMEQIVPS 652
K R+ + YVL RLH +L +R+ A R G + LK++ + P +L Y F+ +LY ++ A K E+ + +GN+ YMLFTLDK+I ++QL+++V D K+LQL++ + ++ G + Y E R + + +N+YRL+ S + PS L Q++ S
Sbjct: 1100 KDSRVFYGNDDFYVLFRLHQILYQRILSAKRNCSGGE-LKSKNSKDP----------------------------NSLDPYARFMKVLYGLLDGSAENS-KFEDECRAIIGNQSYMLFTLDKLIYKLVKQLQAIVADEMDNKLLQLYEYEKSRKPGRVIDSVYYENARVLLH--EENVYRLECSSS-------PSRLSIQLMDS 1264 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1872.4636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1872.4636.1 >prot_H-paniculata_contig1872.4636.1 ID=prot_H-paniculata_contig1872.4636.1|Name=mRNA_H-paniculata_contig1872.4636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=464bp MCTQELYVLMRLHHVLCERMGKAVRLAEGAKALKAQQKEHPQNPTVREGAback to top mRNA from alignment at H-paniculata_contig1872:1488..9538+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1872.4636.1 ID=mRNA_H-paniculata_contig1872.4636.1|Name=mRNA_H-paniculata_contig1872.4636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8051bp|location=Sequence derived from alignment at H-paniculata_contig1872:1488..9538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1872:1488..9538+ >mRNA_H-paniculata_contig1872.4636.1 ID=mRNA_H-paniculata_contig1872.4636.1|Name=mRNA_H-paniculata_contig1872.4636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2784bp|location=Sequence derived from alignment at H-paniculata_contig1872:1488..9538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |