prot_H-paniculata_contig18715.4635.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18715.4635.1
Unique Nameprot_H-paniculata_contig18715.4635.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length307
Homology
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 3.320e-115
Identity = 214/329 (65.05%), Postives = 234/329 (71.12%), Query Frame = 0
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQEAAVAAVAATMAMATADNDEAMLAGP---------------------DEMKTEMGSS-IGDVEASALWATAAAAGGVDDAQAARLEVLAGLVAGIDDKVRLERGSGG 307
            RCLIVGLSALR+ QQGFDP VL+ET EAVFDATACYFPVTFTPPPNDPHNISPDAL+TGLE VLVGSPGMA HV+PMLLDKLSSEVS +KEASLKA+V+GVRAFG PGVGVHLRAIG AM EEAV+G+DPDLA+LALLSLTEVVRE+ASHA  TG GEAC EW ALA+PLL GAVAEV GDQPCSVLGRG+ARVL ALA SSALGLRSALALAVPRLL+ R+EA                                             D M T  G++ + D EA             +DAQ ARL  LAGL A +DDKV      GG
Sbjct:  275 RCLIVGLSALRKTQQGFDPAVLQETAEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVFTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMVTSGGATAVADAEA------------FEDAQTARLGALAGLAAAVDDKVDFSGSQGG 591          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 2.040e-108
Identity = 189/224 (84.38%), Postives = 203/224 (90.62%), Query Frame = 0
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQEA 224
            RCLIVGLSALR+ QQGFDP VL+ET EAVFDATACYFPVTFTPPPNDPHNISPDAL+TGLE VLVGSPGMA HV+PMLLDKLSSEVS +KEASLKA+V+GVRAFG PGVGVHLRAIG AM EEAV+G+DPDLA+LALLSLTEVVRE+ASHA   G GEAC EW ALA PLL GAVAEV GDQPCSVLGRG+ARVL ALA SSALGLRSALALAVPRLL+ R+EA
Sbjct:  229 RCLIVGLSALRKTQQGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVFAGLGEACPEWRALANPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 452          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A5D6XS49_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS49_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.180e-20
Identity = 67/203 (33.00%), Postives = 104/203 (51.23%), Query Frame = 0
Query:   23 EETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQEAA 225
            ++  +  FD  +CYFP+TFTPPPNDP+ I+ + L   L      S  +A+H VP LL+KL+S V  +K  +L+ LV    A+    + +H+  +  A++ E V G   ++   AL ++          A+    G A   W+     L   A +++ G    S++   A RVL AL R SALG    L  AVP L++  +E+A
Sbjct:  223 DQLLQHYFDVVSCYFPITFTPPPNDPYGITSEELIGSLRRAFAASDLLAKHAVPFLLEKLASTVVEAKLDALQTLVFCCEAYAVNALLLHMVPVANALYHEVVKGERKEVIEAALGAIARFAGV-VGRAKTRAAGGAAYAWSKFVVELTARATSDLAGHAADSMVSVSAGRVLAALGRDSALGFAHVLDAAVPLLVQQFRESA 424          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: W7U6Q4_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.530e-20
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 0
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASH 150
            RCLI+ L+ + ++Q  F P   +   EA+FD TACYFP+TFTPPPNDP+ I+PD L   L E L   P MA  ++P+L+DKL+S    +K  +L  L    R  G   +  +L ++  A+F+E V+ A+  + + AL    E  R  A+H
Sbjct:  249 RCLILCLNIISRVQVIF-PAASDAHIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRAMLGNLASVTGALFQEIVSCAEAPVVAAAL----ETCRSLAAH 393          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD)

HSP 1 Score: 100 bits (249), Expect = 7.810e-20
Identity = 68/218 (31.19%), Postives = 110/218 (50.46%), Query Frame = 0
Query:    2 CLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLK 219
            CL +    L +++  FD    +   +  FD  +CYFP+TFTPPPNDP+ I+ + L   L +    S  +A+HV+P LL+KLSS V  +K  SL+ LV    A+      +H+ +I  A++ E V G   ++   +L +++         A+    G A   W      L   A++++ G    S++   A +VL AL + S LG    L  +VP L++
Sbjct:  202 CLQIARELLAKLEVVFDRH--DAVLQQYFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAFAASDLLAKHVLPFLLEKLSSTVVEAKLDSLQTLVFCCEAYSINVALLHMLSIANALYHEVVKGEKKEVIEASLRAISRF-SSVIGLAKTKAAGGAAYAWNKFVVELTTRAMSDLTGHATDSLVSVSAGQVLAALGKDSVLGFTHVLETSVPLLIQ 416          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL)

HSP 1 Score: 97.1 bits (240), Expect = 1.160e-18
Identity = 67/213 (31.46%), Postives = 107/213 (50.23%), Query Frame = 0
Query:    7 LSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLK 219
            +S L  + +  D  +L++     FD  +CYFP+TFTPPPNDP+ I+ + L T L +    S  +ARHV+P LL+KLSS V+ +K  S++ LV    A+      ++L  I  A++ E V G   ++   +L ++T         A+    G A   WT     L   A  ++ G+   S+    A + L A+ + SA      L  ++P LL+
Sbjct:  205 MSTLASVFEKHDTAILQQ----YFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINVTLLYLHTIATALYHEVVKGEKKEVIEASLKAITRFA-SLIGLAKTKSVGGAAYAWTKFVLELTKRATDDLRGNAVDSLASASAGQALAAIGKESAPAFTHVLEASIPLLLE 412          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A2D4CGX4_PYTIN (MMS19 nucleotide excision repair protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGX4_PYTIN)

HSP 1 Score: 94.7 bits (234), Expect = 7.610e-18
Identity = 71/224 (31.70%), Postives = 111/224 (49.55%), Query Frame = 0
Query:    2 CLIVGLSALRQMQQGFDPR--VLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQE 223
            CL +    L Q+   F+    VL    +  FD  +CYFP+TFTPPPNDP+ I+ + L   L + +  S  +ARHV+P LL+KLS+ V  +K  S++ LV    ++    + +HL +I  A + E + G   D+ + +L ++       A  A+    G A   W      L   AV ++ G+   S+    A +VL AL + S       L  AVP +++  QE
Sbjct:  223 CLKIARELLVQLAPVFEKHDGVL---LQQYFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAMAASDLVARHVLPFLLEKLSTTVVEAKLDSIQTLVFCCESYSMNVLLLHLHSIATAFYHEVMKGEKKDVITASLQAIARFAGAIA-QAKTKSIGGAAYAWNKFVVELTKRAVDDLRGNAVDSMASASAGKVLAALGKESGPAFSHVLEHAVPLIVEQFQE 442          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A1V9ZU67_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU67_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-16
Identity = 65/219 (29.68%), Postives = 113/219 (51.60%), Query Frame = 0
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLS-SEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLL 218
            R L++ L    ++   F  +V  +  +A FD T+CYFP+TF PPPNDP+ I+ + L   L  V V   G+A+HV+PM+LDKL  + V+   +  L+ +      +    + +H + +  A++   ++G +  + + AL +L  + R  +  ++L G       WT     L+  A+ ++  + P S++  GA  VL A+A   A G    L+ A+  LL
Sbjct:  186 RNLLLCLQFSAELLTTFGTQVDGDVAKAFFDTTSCYFPITFRPPPNDPYGITSEDLVAALRGVFVAHDGLAKHVLPMVLDKLQRTTVAEMTKDILETIAFCCTKYPLNRLLLHFQPVAAAVYHHVLHGENTGIITTALAALKTITRAVSPPSKLPGMQALA--WTKCIVFLVHKALEDLSQNAPDSMISAGAGSVLVAIASVGATGFSFVLSTALELLL 402          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A6P5AMX8_BRABE (MMS19 nucleotide excision repair protein n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AMX8_BRABE)

HSP 1 Score: 90.1 bits (222), Expect = 2.520e-16
Identity = 60/161 (37.27%), Postives = 87/161 (54.04%), Query Frame = 0
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACS 161
            R LI+  S  R + Q F    +    E  F+  ACYFP+ FTPP +DPH ++ + L  GL +VL  +   A+  +PMLL+KLSS+V+ +K  SL  L +    +G  G+   L  +  A+ +E  N    D+ + AL  LT VV  + SHA +T TG   S
Sbjct:  181 RNLIIAFSIARIIAQSFP---IGTFTEEFFEVVACYFPIDFTPPADDPHGVTREDLVLGLRQVLAATHQFAQFCLPMLLEKLSSDVTSAKLDSLHTLAACAEVYGADGLKSFLDLLLSAISKEVYNSIHQDIENAALTGLTAVVA-TLSHA-VTETGSVFS 336          
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A2P6TWM0_CHLSO (MMS19 nucleotide excision repair protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWM0_CHLSO)

HSP 1 Score: 89.0 bits (219), Expect = 5.770e-16
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 0
Query:    1 RCLIVGLSAL--------RQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGA 128
            RCL++   A+        RQ ++      LEE+ E +F+  ACYFPVTFTPPPNDP+ I+   L  GLE  L   P  A  VVP++ +KLSS +  +K  +L  L +   ++GP  +  H  A+  A+  E  + A
Sbjct:  200 RCLLLSFDAIQALLALYHRQPEEALCRERLEESAEELFEVLACYFPVTFTPPPNDPNKITRADLARGLERTLAAEPLFAPFVVPLIAEKLSSSIRQAKLDALSLLGACAASYGPAPLADHASALWAALRPELASPA 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCY0_9PHAE3.320e-11565.05MMS19 nucleotide excision repair protein (Fragment... [more]
D8LJJ0_ECTSI2.040e-10884.38MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
A0A5D6XS49_9STRA3.180e-2033.00MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
W7U6Q4_9STRA4.530e-2040.00MMS19 nucleotide excision repair protein n=2 Tax=M... [more]
K3WEQ0_GLOUD7.810e-2031.19MMS19 nucleotide excision repair protein n=1 Tax=G... [more]
A0A8K1CHX8_PYTOL1.160e-1831.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CGX4_PYTIN7.610e-1831.70MMS19 nucleotide excision repair protein n=2 Tax=P... [more]
A0A1V9ZU67_9STRA1.380e-1629.68MMS19 nucleotide excision repair protein n=1 Tax=A... [more]
A0A6P5AMX8_BRABE2.520e-1637.27MMS19 nucleotide excision repair protein n=1 Tax=B... [more]
A0A2P6TWM0_CHLSO5.770e-1637.50MMS19 nucleotide excision repair protein n=1 Tax=C... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029240MMS19, N-terminalPFAMPF14500MMS19_Ncoord: 1..125
e-value: 1.8E-32
score: 113.0
IPR039920DNA repair/transcription protein MET18/MMS19PANTHERPTHR12891DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19coord: 1..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18715contigH-paniculata_contig18715:83..3674 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18715.4635.1mRNA_H-paniculata_contig18715.4635.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18715 83..3674 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18715.4635.1 ID=prot_H-paniculata_contig18715.4635.1|Name=mRNA_H-paniculata_contig18715.4635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHN
ISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSG
VRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASH
AELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALAR
SSALGLRSALALAVPRLLKVRQEAAVAAVAATMAMATADNDEAMLAGPDE
MKTEMGSSIGDVEASALWATAAAAGGVDDAQAARLEVLAGLVAGIDDKVR
LERGSGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029240MMS19_N
IPR039920MET18/MMS19