mRNA_H-paniculata_contig18715.4635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18715.4635.1
Unique NamemRNA_H-paniculata_contig18715.4635.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 3.320e-115
Identity = 214/329 (65.05%), Postives = 234/329 (71.12%), Query Frame = 1 
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQEAAVAAVAATMAMATADNDEAMLAGP---------------------DEMKTEMGSS-IGDVEASALWATAAAAGGVDDAQAARLEVLAGLVAGIDDKVRLERGSGG 921
            RCLIVGLSALR+ QQGFDP VL+ET EAVFDATACYFPVTFTPPPNDPHNISPDAL+TGLE VLVGSPGMA HV+PMLLDKLSSEVS +KEASLKA+V+GVRAFG PGVGVHLRAIG AM EEAV+G+DPDLA+LALLSLTEVVRE+ASHA  TG GEAC EW ALA+PLL GAVAEV GDQPCSVLGRG+ARVL ALA SSALGLRSALALAVPRLL+ R+EA                                             D M T  G++ + D EA             +DAQ ARL  LAGL A +DDKV      GG
Sbjct:  275 RCLIVGLSALRKTQQGFDPAVLQETAEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVFTGLGEACPEWRALAKPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMVTSGGATAVADAEA------------FEDAQTARLGALAGLAAAVDDKVDFSGSQGG 591
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 2.040e-108
Identity = 189/224 (84.38%), Postives = 203/224 (90.62%), Query Frame = 1 
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQEA 672
            RCLIVGLSALR+ QQGFDP VL+ET EAVFDATACYFPVTFTPPPNDPHNISPDAL+TGLE VLVGSPGMA HV+PMLLDKLSSEVS +KEASLKA+V+GVRAFG PGVGVHLRAIG AM EEAV+G+DPDLA+LALLSLTEVVRE+ASHA   G GEAC EW ALA PLL GAVAEV GDQPCSVLGRG+ARVL ALA SSALGLRSALALAVPRLL+ R+EA
Sbjct:  229 RCLIVGLSALRKTQQGFDPAVLQETSEAVFDATACYFPVTFTPPPNDPHNISPDALRTGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEEAVHGSDPDLAALALLSLTEVVRETASHAVFAGLGEACPEWRALANPLLEGAVAEVTGDQPCSVLGRGSARVLLALAASSALGLRSALALAVPRLLRARKEA 452
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A5D6XS49_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS49_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.180e-20
Identity = 67/203 (33.00%), Postives = 104/203 (51.23%), Query Frame = 1 
Query:   67 EETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQEAA 675
            ++  +  FD  +CYFP+TFTPPPNDP+ I+ + L   L      S  +A+H VP LL+KL+S V  +K  +L+ LV    A+    + +H+  +  A++ E V G   ++   AL ++          A+    G A   W+     L   A +++ G    S++   A RVL AL R SALG    L  AVP L++  +E+A
Sbjct:  223 DQLLQHYFDVVSCYFPITFTPPPNDPYGITSEELIGSLRRAFAASDLLAKHAVPFLLEKLASTVVEAKLDALQTLVFCCEAYAVNALLLHMVPVANALYHEVVKGERKEVIEAALGAIARFAGV-VGRAKTRAAGGAAYAWSKFVVELTARATSDLAGHAADSMVSVSAGRVLAALGRDSALGFAHVLDAAVPLLVQQFRESA 424
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: W7U6Q4_9STRA (MMS19 nucleotide excision repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Q4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.530e-20
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 1 
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASH 450
            RCLI+ L+ + ++Q  F P   +   EA+FD TACYFP+TFTPPPNDP+ I+PD L   L E L   P MA  ++P+L+DKL+S    +K  +L  L    R  G   +  +L ++  A+F+E V+ A+  + + AL    E  R  A+H
Sbjct:  249 RCLILCLNIISRVQVIF-PAASDAHIEALFDITACYFPITFTPPPNDPYGITPDVLSHALREALTRRPSMAEFLLPLLVDKLTSTHVPAKLEALLTLQVATRTIGMRAMLGNLASVTGALFQEIVSCAEAPVVAAAL----ETCRSLAAH 393
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: K3WEQ0_GLOUD (MMS19 nucleotide excision repair protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEQ0_GLOUD)

HSP 1 Score: 100 bits (249), Expect = 7.810e-20
Identity = 68/218 (31.19%), Postives = 110/218 (50.46%), Query Frame = 1 
Query:    4 CLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLK 657
            CL +    L +++  FD    +   +  FD  +CYFP+TFTPPPNDP+ I+ + L   L +    S  +A+HV+P LL+KLSS V  +K  SL+ LV    A+      +H+ +I  A++ E V G   ++   +L +++         A+    G A   W      L   A++++ G    S++   A +VL AL + S LG    L  +VP L++
Sbjct:  202 CLQIARELLAKLEVVFDRH--DAVLQQYFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAFAASDLLAKHVLPFLLEKLSSTVVEAKLDSLQTLVFCCEAYSINVALLHMLSIANALYHEVVKGEKKEVIEASLRAISRF-SSVIGLAKTKAAGGAAYAWNKFVVELTTRAMSDLTGHATDSLVSVSAGQVLAALGKDSVLGFTHVLETSVPLLIQ 416
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A8K1CHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHX8_PYTOL)

HSP 1 Score: 97.1 bits (240), Expect = 1.160e-18
Identity = 67/213 (31.46%), Postives = 107/213 (50.23%), Query Frame = 1 
Query:   19 LSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLK 657
            +S L  + +  D  +L++     FD  +CYFP+TFTPPPNDP+ I+ + L T L +    S  +ARHV+P LL+KLSS V+ +K  S++ LV    A+      ++L  I  A++ E V G   ++   +L ++T         A+    G A   WT     L   A  ++ G+   S+    A + L A+ + SA      L  ++P LL+
Sbjct:  205 MSTLASVFEKHDTAILQQ----YFDVVSCYFPITFTPPPNDPYGITSEDLITSLRKAFAASDLLARHVLPFLLEKLSSTVTEAKLDSIQTLVFCCEAYSINVTLLYLHTIATALYHEVVKGEKKEVIEASLKAITRFA-SLIGLAKTKSVGGAAYAWTKFVLELTKRATDDLRGNAVDSLASASAGQALAAIGKESAPAFTHVLEASIPLLLE 412
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A2D4CGX4_PYTIN (MMS19 nucleotide excision repair protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGX4_PYTIN)

HSP 1 Score: 94.7 bits (234), Expect = 7.610e-18
Identity = 71/224 (31.70%), Postives = 111/224 (49.55%), Query Frame = 1 
Query:    4 CLIVGLSALRQMQQGFDPR--VLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLLKVRQE 669
            CL +    L Q+   F+    VL    +  FD  +CYFP+TFTPPPNDP+ I+ + L   L + +  S  +ARHV+P LL+KLS+ V  +K  S++ LV    ++    + +HL +I  A + E + G   D+ + +L ++       A  A+    G A   W      L   AV ++ G+   S+    A +VL AL + S       L  AVP +++  QE
Sbjct:  223 CLKIARELLVQLAPVFEKHDGVL---LQQYFDVVSCYFPITFTPPPNDPYGITSEELILSLRKAMAASDLVARHVLPFLLEKLSTTVVEAKLDSIQTLVFCCESYSMNVLLLHLHSIATAFYHEVMKGEKKDVITASLQAIARFAGAIA-QAKTKSIGGAAYAWNKFVVELTKRAVDDLRGNAVDSMASASAGKVLAALGKESGPAFSHVLEHAVPLIVEQFQE 442
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A1V9ZU67_9STRA (MMS19 nucleotide excision repair protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU67_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-16
Identity = 65/219 (29.68%), Postives = 113/219 (51.60%), Query Frame = 1 
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLS-SEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALARSSALGLRSALALAVPRLL 654
            R L++ L    ++   F  +V  +  +A FD T+CYFP+TF PPPNDP+ I+ + L   L  V V   G+A+HV+PM+LDKL  + V+   +  L+ +      +    + +H + +  A++   ++G +  + + AL +L  + R  +  ++L G       WT     L+  A+ ++  + P S++  GA  VL A+A   A G    L+ A+  LL
Sbjct:  186 RNLLLCLQFSAELLTTFGTQVDGDVAKAFFDTTSCYFPITFRPPPNDPYGITSEDLVAALRGVFVAHDGLAKHVLPMVLDKLQRTTVAEMTKDILETIAFCCTKYPLNRLLLHFQPVAAAVYHHVLHGENTGIITTALAALKTITRAVSPPSKLPGMQALA--WTKCIVFLVHKALEDLSQNAPDSMISAGAGSVLVAIASVGATGFSFVLSTALELLL 402
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BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A6P5AMX8_BRABE (MMS19 nucleotide excision repair protein n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AMX8_BRABE)

HSP 1 Score: 90.1 bits (222), Expect = 2.520e-16
Identity = 60/161 (37.27%), Postives = 87/161 (54.04%), Query Frame = 1 
Query:    1 RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASHAELTGTGEACS 483
            R LI+  S  R + Q F    +    E  F+  ACYFP+ FTPP +DPH ++ + L  GL +VL  +   A+  +PMLL+KLSS+V+ +K  SL  L +    +G  G+   L  +  A+ +E  N    D+ + AL  LT VV  + SHA +T TG   S
Sbjct:  181 RNLIIAFSIARIIAQSFP---IGTFTEEFFEVVACYFPIDFTPPADDPHGVTREDLVLGLRQVLAATHQFAQFCLPMLLEKLSSDVTSAKLDSLHTLAACAEVYGADGLKSFLDLLLSAISKEVYNSIHQDIENAALTGLTAVVA-TLSHA-VTETGSVFS 336
[Close]
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Match: A0A2P6TWM0_CHLSO (MMS19 nucleotide excision repair protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWM0_CHLSO)

HSP 1 Score: 89.0 bits (219), Expect = 5.770e-16
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:    1 RCLIVGLSAL--------RQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHNISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSGVRAFGPPGVGVHLRAIGQAMFEEAVNGA 384
            RCL++   A+        RQ ++      LEE+ E +F+  ACYFPVTFTPPPNDP+ I+   L  GLE  L   P  A  VVP++ +KLSS +  +K  +L  L +   ++GP  +  H  A+  A+  E  + A
Sbjct:  200 RCLLLSFDAIQALLALYHRQPEEALCRERLEESAEELFEVLACYFPVTFTPPPNDPNKITRADLARGLERTLAAEPLFAPFVVPLIAEKLSSSIRQAKLDALSLLGACAASYGPAPLADHASALWAALRPELASPA 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18715.4635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCY0_9PHAE3.320e-11565.05MMS19 nucleotide excision repair protein (Fragment... [more]
D8LJJ0_ECTSI2.040e-10884.38MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
A0A5D6XS49_9STRA3.180e-2033.00MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
W7U6Q4_9STRA4.530e-2040.00MMS19 nucleotide excision repair protein n=2 Tax=M... [more]
K3WEQ0_GLOUD7.810e-2031.19MMS19 nucleotide excision repair protein n=1 Tax=G... [more]
A0A8K1CHX8_PYTOL1.160e-1831.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CGX4_PYTIN7.610e-1831.70MMS19 nucleotide excision repair protein n=2 Tax=P... [more]
A0A1V9ZU67_9STRA1.380e-1629.68MMS19 nucleotide excision repair protein n=1 Tax=A... [more]
A0A6P5AMX8_BRABE2.520e-1637.27MMS19 nucleotide excision repair protein n=1 Tax=B... [more]
A0A2P6TWM0_CHLSO5.770e-1637.50MMS19 nucleotide excision repair protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18715contigH-paniculata_contig18715:83..3674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue1.1e-95
Seed eggNOG ortholog2880.D8LJJ0
Preferred nameMMS19
KEGG koko:K15075
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000160,GO:0000228,GO:0000428,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006289,GO:0006351,GO:0006355,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0007059,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010569,GO:0010604,GO:0010628,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0023052,GO:0030159,GO:0030331,GO:0030674,GO:0030880,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031618,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032947,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035258,GO:0035556,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045739,GO:0045893,GO:0045911,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051186,GO:0051252,GO:0051254,GO:0051427,GO:0051604,GO:0051716,GO:0055029,GO:0060090,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090575,GO:0097361,GO:0097428,GO:0097659,GO:0098687,GO:0106035,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1905168,GO:1990234,GO:2000112,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.positive regulation of double-strand break repair via homologous recombination
EggNOG OGsKOG1967@1,KOG1967@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons4
Model size921
Cds size921
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18715.4635.1prot_H-paniculata_contig18715.4635.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18715 83..3674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929442.27966-CDS-H-paniculata_contig18715:82..2571622929442.27966-CDS-H-paniculata_contig18715:82..257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 83..257 +
1691480863.041916-CDS-H-paniculata_contig18715:82..2571691480863.041916-CDS-H-paniculata_contig18715:82..257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 83..257 +
1622929442.2978768-CDS-H-paniculata_contig18715:571..7651622929442.2978768-CDS-H-paniculata_contig18715:571..765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 572..765 +
1691480863.0548584-CDS-H-paniculata_contig18715:571..7651691480863.0548584-CDS-H-paniculata_contig18715:571..765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 572..765 +
1622929442.324951-CDS-H-paniculata_contig18715:1438..16571622929442.324951-CDS-H-paniculata_contig18715:1438..1657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 1439..1657 +
1691480863.0632005-CDS-H-paniculata_contig18715:1438..16571691480863.0632005-CDS-H-paniculata_contig18715:1438..1657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 1439..1657 +
1622929442.341319-CDS-H-paniculata_contig18715:3341..36741622929442.341319-CDS-H-paniculata_contig18715:3341..3674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 3342..3674 +
1691480863.0779634-CDS-H-paniculata_contig18715:3341..36741691480863.0779634-CDS-H-paniculata_contig18715:3341..3674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18715 3342..3674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18715.4635.1

>prot_H-paniculata_contig18715.4635.1 ID=prot_H-paniculata_contig18715.4635.1|Name=mRNA_H-paniculata_contig18715.4635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
RCLIVGLSALRQMQQGFDPRVLEETCEAVFDATACYFPVTFTPPPNDPHN
ISPDALKTGLEEVLVGSPGMARHVVPMLLDKLSSEVSVSKEASLKALVSG
VRAFGPPGVGVHLRAIGQAMFEEAVNGADPDLASLALLSLTEVVRESASH
AELTGTGEACSEWTALARPLLVGAVAEVGGDQPCSVLGRGAARVLQALAR
SSALGLRSALALAVPRLLKVRQEAAVAAVAATMAMATADNDEAMLAGPDE
MKTEMGSSIGDVEASALWATAAAAGGVDDAQAARLEVLAGLVAGIDDKVR
LERGSGG
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mRNA from alignment at H-paniculata_contig18715:83..3674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18715.4635.1 ID=mRNA_H-paniculata_contig18715.4635.1|Name=mRNA_H-paniculata_contig18715.4635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3592bp|location=Sequence derived from alignment at H-paniculata_contig18715:83..3674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGTCTAATCGTCGGGCTTTCTGCACTGCGCCAAATGCAGCAAGGCTT
CGACCCCCGCGTTTTGGAGGAGACCTGCGAGGCGGTTTTCGATGCCACCG
CCTGTTACTTCCCCGTCACATTCACCCCGCCCCCTAACGACCCGCACAAT
ATCAGCCCAGATGCCCTGAAAACAGGTAAGTGGGGGGGGGGGCAAACTAG
AGGAGGCGGGAGAGCTACAGCACAGATGGTTTTTTGTCTCAGTATTCAAA
TGCAAGTTGGGGACAGTCTCTTGAGAAAATTATGTGGCATTTTCAAAACT
TTGAGCCTCGGCCCTTCTGTAAAGAAACGATTATTAGGACATTAAGCGGG
CTCAATATATTTCTACACAAGTGAGAACAATTTATTACCTGGTACTCGAA
GAGTTCTTGAATTAAAACATTTTGAACCTCACTTTTTTTTTTTTACTGGT
TTCTTTTCGCCGGGCCGCATCTCTATCTCCTCTTAAAAGGCCTAGAGGAG
GTGCTCGTCGGCTCTCCGGGAATGGCGAGGCACGTTGTGCCAATGCTCCT
GGACAAGCTGTCGTCCGAGGTTTCCGTGTCTAAGGAGGCGTCTTTGAAGG
CACTAGTTTCAGGGGTTCGGGCGTTCGGCCCCCCCGGCGTTGGGGTGCAC
CTGCGGGCTATCGGACAGGCGATGTTTGAAGAGGTACGGGGTAGAGGGGG
CGGCGGGAAAAACGAACTCACACACAAACAAGCAAACTCCATTTCACCAA
CAGCAATCCTCATTCGTGAGTCAACCCTGCCACAGTTAGTTGGACTAAAG
GTTCTGAAGCTCGTGTAATAACTCCATCATGGTACCCATGTTGAAGTTAT
GCCGCCGACTTCACACTCAAGTTATTATACACCTACCGGCAAAACTAGAT
GAACAGGGGAGGGAGGGGGGGTATTACGGTTGTGCTCTCATAGCCGAGGC
TCAGCATGCAGCATGAGAGGCCAGCGTCAGCATTCGAGACGAGAGCCCAG
CATCATGGGTCGATCAGGAGAAGCACGGGAAACACCATGAAGTGGTTTGT
TATACGGAACTTGGAGCCTATGCCTATAATAAATAGAAGTGGATCTTCAT
ACAACACTAATTTCTTATGATGTCACAAACCAAGGAGAAAACTTTCCGGC
GATCCCTTCCATATAATAAATCCTCATGTATCATACAACGGTCACTAAGG
CAATCAACCGTTTGTGTTGTTTGACGATATTAATCGAACAGGGGAAGAGA
GGTTAATCACAGAAAAAATGGAAAAATAGAGAATTGCCGTAGAGGCGGAA
AATGTACAATGAGAGAATCCCAGCCTACCCCCCCATCAACCCCCTGTTCC
CGGCAGGCAGTAAACGGAGCAGACCCCGACCTGGCCTCTCTTGCCCTCCT
ATCGCTCACCGAAGTGGTGCGTGAATCTGCCTCCCACGCGGAGTTGACAG
GCACCGGGGAGGCGTGTTCGGAGTGGACTGCTTTGGCACGACCATTGCTG
GTAGGGGCGGTGGCCGAGGTCGGCGGGGATCAGCCGTGCTCGGTGCTGGG
AAGAGGGGCGGCTCGTGTTTTGCAGGTGATAGTTCTCGAGGAGGGGGTGG
GTCGGAGTGGCGAGAGAGAGAGGGGCGGGGGGGGGGGGGGGGGTCCACTG
TTCCATTCTAGAGGTGCATGATAACTCCCGAGATCTAAGTAAAAACAAAT
GGCACTTAGTTTTTTTATGGGGGCCCAACACCTTTGGTTAATTGTAGGTT
CACAACATCAATATATTTATACAACTTTCTATTGCTCACCAGCAATTTTC
AAATCTCGAAAGAGGGGGTGGATGTTCGTCGCTAAAGATACACATTCTGT
AACATCAAAATACAGCGCACCGCCTCGCGCTATTTGCACCCGTCTGCCAG
ATCCCTTTGCCCGCGCACTAGTGTATAGGGGCCTCACATATTTCGTCTAA
AATCCCAATTTTTCACACATCCCGGAGAGGGCAACGTGTGGCATCCCGCT
CATATTTTTTCGAGCGCGTCACGTTTTCGTCGTCAGGCAATTTTTTTTTG
GGGGGGGGCGGGGAAGGAATTTTTTTTCTCGTTCGTAACTCGGGATTTTT
TTGAGCCCTCCGAAAATAGATGATAAGACTGAAAAACAAAATTGGGAAAA
TGATGGAAAATGACGGAAGGAAGTACACGTATTTTCCATTTTCGGATCGG
CGGGCCGCACACCTTGCCACCTAGCGATGTATGCTTACCCCAGGCCCCTC
GATCAACGTGTTAGGGGCACTCGGACATTATTTTCACTCAATACACCCGG
TTCTCTCTATATAGATACCCTGTGCATACCATCATTCACCGCCAGTAGCC
TGTGTTTATAGTAAATGGATACAGCCAGTAGGTACGTAGACTCTGTAGCA
CTCTGGTGTAACGCTGAACAAGTCAAGAGACACGGCTGCAGTATGGACAA
GGAGCGACGGCTACACAGGGTGGAACGAAACTATCAAGATCCTATCTTTG
GGGCATGGATATCCTCGGAGATGAGGTCGGAGAACGTGCTGAGGATCGTT
CTTTTTCGACGAAAATGTGCATGAGGCTTGTTCTGATTACGGAGTAATGG
GAATAGTATGGTAGGCTTCTGTTGAATAGCGTTTGATAGCGGGTTGTTGA
ATCACCGTTGAACGATACACTCCAACGTATGTATTCAACGGATCACCAGT
AAAATCCATGTATTACCGTAAGAGGCAATATTTCCGGTTTCTGTTTCATG
TTAGAAAGTCGGATCTATTTGCGGGGTTGGAATTCCTTGAGGAAGTCGCG
TACACATACGATCAGCTTGTTGTGGCTTCCACTCTCGGGAACCATCTTGA
AGGGTCAAATGAAAAAAAAAACAAAAAAAACTTGCGAGCTACGAAGGGAT
ATTTTGTGCCTCGCACGCGTTAATCTTCTTGGTGAACACCAAGGGAGATT
TCTACGCAGCTCCAGCGTCTCTTTGTGCACATTTCTGATTGCTTCTGACT
ATCATAATGCTTGCTGCTCTAGCAGTAAAACACACAACACACACAATACA
CACACACACACACACACACGCACACACACACACACACACACAAAGTGTTC
GCCAAATTCTCGCAACAGCCTTTTCCCTTGAAAAGACAAATTCTTTCAAC
CCGTTGAGATGCAGTTTTTTTTTCACGTGTGTGGTGCATCCCGCCTACCT
CTCCTTTTGCTTCTTCAAACGGCCCCCGCCCCCTCCGTCCCTTCCAACCT
CTCACCTAGGCTCTCGCTAGATCCTCGGCACTGGGTCTCCGCTCCGCGTT
GGCCTTAGCCGTACCGCGACTGCTCAAGGTTCGCCAGGAAGCTGCGGTGG
CGGCTGTGGCGGCGACAATGGCAATGGCAACGGCTGACAATGACGAGGCC
ATGTTAGCTGGTCCCGACGAGATGAAGACGGAGATGGGGTCGTCCATCGG
AGATGTCGAAGCTTCTGCATTGTGGGCAACGGCAGCGGCGGCGGGTGGAG
TGGACGATGCGCAGGCGGCGAGGTTGGAGGTGCTGGCGGGGCTCGTGGCT
GGTATTGATGACAAGGTCAGGCTGGAGAGGGGGTCGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18715:83..3674+

>mRNA_H-paniculata_contig18715.4635.1 ID=mRNA_H-paniculata_contig18715.4635.1|Name=mRNA_H-paniculata_contig18715.4635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig18715:83..3674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGTCTAATCGTCGGGCTTTCTGCACTGCGCCAAATGCAGCAAGGCTT
CGACCCCCGCGTTTTGGAGGAGACCTGCGAGGCGGTTTTCGATGCCACCG
CCTGTTACTTCCCCGTCACATTCACCCCGCCCCCTAACGACCCGCACAAT
ATCAGCCCAGATGCCCTGAAAACAGAGGTGTCTAATCGTCGGGCTTTCTG
CACTGCGCCAAATGCAGCAAGGCTTCGACCCCCGCGTTTTGGAGGAGACC
TGCGAGGCGGTTTTCGATGCCACCGCCTGTTACTTCCCCGTCACATTCAC
CCCGCCCCCTAACGACCCGCACAATATCAGCCCAGATGCCCTGAAAACAG
GCCTAGAGGAGGTGCTCGTCGGCTCTCCGGGAATGGCGAGGCACGTTGTG
CCAATGCTCCTGGACAAGCTGTCGTCCGAGGTTTCCGTGTCTAAGGAGGC
GTCTTTGAAGGCACTAGTTTCAGGGGTTCGGGCGTTCGGCCCCCCCGGCG
TTGGGGTGCACCTGCGGGCTATCGGACAGGCGATGTTTGAAGAGGCCTAG
AGGAGGTGCTCGTCGGCTCTCCGGGAATGGCGAGGCACGTTGTGCCAATG
CTCCTGGACAAGCTGTCGTCCGAGGTTTCCGTGTCTAAGGAGGCGTCTTT
GAAGGCACTAGTTTCAGGGGTTCGGGCGTTCGGCCCCCCCGGCGTTGGGG
TGCACCTGCGGGCTATCGGACAGGCGATGTTTGAAGAGGCAGTAAACGGA
GCAGACCCCGACCTGGCCTCTCTTGCCCTCCTATCGCTCACCGAAGTGGT
GCGTGAATCTGCCTCCCACGCGGAGTTGACAGGCACCGGGGAGGCGTGTT
CGGAGTGGACTGCTTTGGCACGACCATTGCTGGTAGGGGCGGTGGCCGAG
GTCGGCGGGGATCAGCCGTGCTCGGTGCTGGGAAGAGGGGCGGCTCGTGT
TTTGCAGGCAGTAAACGGAGCAGACCCCGACCTGGCCTCTCTTGCCCTCC
TATCGCTCACCGAAGTGGTGCGTGAATCTGCCTCCCACGCGGAGTTGACA
GGCACCGGGGAGGCGTGTTCGGAGTGGACTGCTTTGGCACGACCATTGCT
GGTAGGGGCGGTGGCCGAGGTCGGCGGGGATCAGCCGTGCTCGGTGCTGG
GAAGAGGGGCGGCTCGTGTTTTGCAGGCTCTCGCTAGATCCTCGGCACTG
GGTCTCCGCTCCGCGTTGGCCTTAGCCGTACCGCGACTGCTCAAGGTTCG
CCAGGAAGCTGCGGTGGCGGCTGTGGCGGCGACAATGGCAATGGCAACGG
CTGACAATGACGAGGCCATGTTAGCTGGTCCCGACGAGATGAAGACGGAG
ATGGGGTCGTCCATCGGAGATGTCGAAGCTTCTGCATTGTGGGCAACGGC
AGCGGCGGCGGGTGGAGTGGACGATGCGCAGGCGGCGAGGTTGGAGGTGC
TGGCGGGGCTCGTGGCTGGTATTGATGACAAGGTCAGGCTGGAGAGGGGG
TCGGGGGGGGCTCTCGCTAGATCCTCGGCACTGGGTCTCCGCTCCGCGTT
GGCCTTAGCCGTACCGCGACTGCTCAAGGTTCGCCAGGAAGCTGCGGTGG
CGGCTGTGGCGGCGACAATGGCAATGGCAACGGCTGACAATGACGAGGCC
ATGTTAGCTGGTCCCGACGAGATGAAGACGGAGATGGGGTCGTCCATCGG
AGATGTCGAAGCTTCTGCATTGTGGGCAACGGCAGCGGCGGCGGGTGGAG
TGGACGATGCGCAGGCGGCGAGGTTGGAGGTGCTGGCGGGGCTCGTGGCT
GGTATTGATGACAAGGTCAGGCTGGAGAGGGGGTCGGGGGGG
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