mRNA_H-paniculata_contig18711.4634.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18711.4634.1
Unique NamemRNA_H-paniculata_contig18711.4634.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A0D2M0U8_9CHLO (Isoleucyl-tRNA synthetase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M0U8_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 6.590e-25
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    4 RANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            RAN+VVREPE+Q+YW Q R+YE LAE NTGE Y LHDGPPYANGDLH GHA+NK+ K
Sbjct:   64 RANSVVREPEIQSYWAQNRVYESLAETNTGEPYTLHDGPPYANGDLHTGHALNKILK 120
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A835YNF4_9STRA (Isoleucine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.950e-24
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 QRANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            QRANAVVREPELQ YW + R+YEQLAE N G+ YVLHDGPPYANGDLH+GHA+NK+ K
Sbjct:   52 QRANAVVREPELQQYWAENRVYEQLAESNPGDVYVLHDGPPYANGDLHIGHALNKILK 109
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A6H5L2M1_9PHAE (Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2M1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.850e-23
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 QRANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            QRANAV REPELQA+W +ERIYE++ + NTGEK+VLHDGPPYANGDLH+GHA+NK+ K
Sbjct:  121 QRANAVKREPELQAFWDEERIYERVLDDNTGEKFVLHDGPPYANGDLHIGHALNKILK 178
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: B4WPD1_SYNS7 (Isoleucine--tRNA ligase n=4 Tax=Cyanobacteria TaxID=1117 RepID=B4WPD1_SYNS7)

HSP 1 Score: 100 bits (249), Expect = 2.530e-23
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    4 RANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            RANAV REPELQAYWQ+++IYE LA++N GE ++LHDGPPYANGDLHMGHA+NK+ K
Sbjct:   10 RANAVKREPELQAYWQEKKIYETLAQKNPGEPFILHDGPPYANGDLHMGHALNKILK 66
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A087SEW6_AUXPR (Isoleucine-tRNA ligase n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SEW6_AUXPR)

HSP 1 Score: 92.0 bits (227), Expect = 3.250e-23
Identity = 37/57 (64.91%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 RANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            RAN+VVREP++QA+W+++ +Y++L+  N GE Y LHDGPPYANGDLHMGHA+NK+ K
Sbjct:    2 RANSVVREPQIQAFWEEKGVYQKLSRNNPGEVYTLHDGPPYANGDLHMGHALNKILK 58
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A6P0X3V6_9CYAN (Class I tRNA ligase family protein (Fragment) n=1 Tax=Caldora sp. SIO3E6 TaxID=2607806 RepID=A0A6P0X3V6_9CYAN)

HSP 1 Score: 92.8 bits (229), Expect = 4.240e-23
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    4 RANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            RANAV REPELQ YW++++IY++L++ N GE +VLHDGPPYANG LHMGHA+NKV K
Sbjct:   21 RANAVKREPELQKYWEEQQIYDRLSQNNPGEIFVLHDGPPYANGSLHMGHALNKVLK 77
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A6T8JN82_HEMAN (Isoleucine--tRNA ligase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8JN82_HEMAN)

HSP 1 Score: 99.4 bits (246), Expect = 6.440e-23
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 QRANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            QRANAVVREPELQA+W+ E++YE+  E NTG K+VLHDGPPYANGDLH+GHA+NK+ K
Sbjct:  114 QRANAVVREPELQAFWKDEKVYEKAYEDNTGSKFVLHDGPPYANGDLHIGHALNKILK 171
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A7S1TNG1_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNG1_9RHOD)

HSP 1 Score: 92.0 bits (227), Expect = 6.850e-23
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QRANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            QRANAV REPELQA W++  +YE+L+  N GEK+VLHDGPPYANG LHMGHA+NKV K
Sbjct:   48 QRANAVSREPELQALWEKLGVYEKLSRNNPGEKFVLHDGPPYANGALHMGHALNKVLK 105
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BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: UPI001F0A339D (isoleucine--tRNA ligase n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI001F0A339D)

HSP 1 Score: 98.2 bits (243), Expect = 1.640e-22
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    4 RANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            RANA+ REPELQAYWQ++ +YE+LAE N G+ ++LHDGPPYANGDLHMGHA+NK+ K
Sbjct:    2 RANAIKREPELQAYWQEKALYERLAEENPGDPFILHDGPPYANGDLHMGHALNKILK 58
[Close]
BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Match: A0A7S2RFV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFV7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.960e-22
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 QRANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMGHAMNKVTK 174
            QRANAVVREPE+QA+W  E IYE   + NTG  + LHDGPPYANGDLH+GHA+NK+ K
Sbjct:    9 QRANAVVREPEIQAFWDTEGIYEAAFKENTGPTFTLHDGPPYANGDLHIGHALNKILK 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18711.4634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2M0U8_9CHLO6.590e-2575.44Isoleucyl-tRNA synthetase n=1 Tax=Monoraphidium ne... [more]
A0A835YNF4_9STRA9.950e-2477.59Isoleucine--tRNA ligase n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L2M1_9PHAE1.850e-2375.86Isoleucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
B4WPD1_SYNS72.530e-2375.44Isoleucine--tRNA ligase n=4 Tax=Cyanobacteria TaxI... [more]
A0A087SEW6_AUXPR3.250e-2364.91Isoleucine-tRNA ligase n=1 Tax=Auxenochlorella pro... [more]
A0A6P0X3V6_9CYAN4.240e-2370.18Class I tRNA ligase family protein (Fragment) n=1 ... [more]
A0A6T8JN82_HEMAN6.440e-2374.14Isoleucine--tRNA ligase n=1 Tax=Hemiselmis anderse... [more]
A0A7S1TNG1_9RHOD6.850e-2372.41Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
UPI001F0A339D1.640e-2271.93isoleucine--tRNA ligase n=1 Tax=Leptolyngbya sp. B... [more]
A0A7S2RFV7_9STRA1.960e-2268.97Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18711contigH-paniculata_contig18711:4578..4751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.5
Seed ortholog evalue2.7e-19
Seed eggNOG ortholog91464.S7335_3978
Preferred nameileS
KEGG rclassRC00055,RC00523
KEGG koko:K01870
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004822,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006428,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
EggNOG OGs1G0QC@1117,1GYFN@1129,COG0060@1,COG0060@2
EC6.1.1.5
COG Functional cat.J
BiGG ReactioniG2583_1286.G2583_0027,iPC815.YPO0475
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929442.2083588-CDS-H-paniculata_contig18711:4577..47511622929442.2083588-CDS-H-paniculata_contig18711:4577..4751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18711 4578..4751 -
1691480863.0312145-CDS-H-paniculata_contig18711:4577..47511691480863.0312145-CDS-H-paniculata_contig18711:4577..4751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18711 4578..4751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18711.4634.1prot_H-paniculata_contig18711.4634.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18711 4578..4751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18711.4634.1

>prot_H-paniculata_contig18711.4634.1 ID=prot_H-paniculata_contig18711.4634.1|Name=mRNA_H-paniculata_contig18711.4634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
QRANAVVREPELQAYWQQERIYEQLAERNTGEKYVLHDGPPYANGDLHMG
HAMNKVTK
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mRNA from alignment at H-paniculata_contig18711:4578..4751-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18711.4634.1 ID=mRNA_H-paniculata_contig18711.4634.1|Name=mRNA_H-paniculata_contig18711.4634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig18711:4578..4751- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGAGCCAACGCCGTTGTCCGCGAGCCTGAGCTTCAGGCGTACTGGCA
GCAAGAGCGTATCTACGAGCAACTGGCGGAGCGTAACACCGGGGAGAAGT
ATGTTTTGCACGATGGACCTCCCTACGCCAACGGGGACTTGCACATGGGC
CACGCGATGAACAAGGTGACAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18711:4578..4751-

>mRNA_H-paniculata_contig18711.4634.1 ID=mRNA_H-paniculata_contig18711.4634.1|Name=mRNA_H-paniculata_contig18711.4634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig18711:4578..4751- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGAGCCAACGCCGTTGTCCGCGAGCCTGAGCTTCAGGCGTACTGGCA
GCAAGAGCGTATCTACGAGCAACTGGCGGAGCGTAACACCGGGGAGAAGT
ATGTTTTGCACGATGGACCTCCCTACGCCAACGGGGACTTGCACATGGGC
CACGCGATGAACAAGGTGACAAAGCAGCGAGCCAACGCCGTTGTCCGCGA
GCCTGAGCTTCAGGCGTACTGGCAGCAAGAGCGTATCTACGAGCAACTGG
CGGAGCGTAACACCGGGGAGAAGTATGTTTTGCACGATGGACCTCCCTAC
GCCAACGGGGACTTGCACATGGGCCACGCGATGAACAAGGTGACAAAG
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