mRNA_H-paniculata_contig18710.4633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18710.4633.1
Unique NamemRNA_H-paniculata_contig18710.4633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.690e-27
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 MAP--KMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAP   +TLTYF+    AEPVR+ LAMTGQ WEDKR+SF +F  +KP LP GQLPILE  GKVLPQ+GAQLR+VGK
Sbjct:    1 MAPTTSLTLTYFDFAGPAEPVRMALAMTGQPWEDKRVSFSEFPALKPGLPNGQLPILEVGGKVLPQSGAQLRYVGK 76          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.830e-23
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            M PK+ L+YF+I A  EP+RL LAM+GQ WEDKR+S ++F  +KP+LPY QLP LE  G ++PQ+ AQ+R++GK
Sbjct:    1 MGPKLILSYFDIPALGEPLRLALAMSGQAWEDKRVSKEEFMAIKPSLPYNQLPTLEVGGTLIPQSLAQMRYIGK 74          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.730e-23
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAPK+ LTYF+I  AAEP+R  L  +GQ WEDKR++ ++F ++KP+LP GQLP+LE DG  LPQ+   LR+VGK
Sbjct:    1 MAPKLVLTYFDIPGAAEPIRWALEQSGQEWEDKRLTGEEFGVVKPSLPNGQLPVLEVDGYTLPQSMTILRYVGK 74          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.050e-19
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAP M LTYF+I A  E +RL LA +G  W D R++F+++  +KPTLPY Q+P+LE DG V+PQT A LR+VGK
Sbjct:    1 MAP-MKLTYFDIAALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPTLPYQQMPVLEVDGAVIPQTFAILRYVGK 73          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.270e-18
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAP M LTYF   A  EP+RL LA +G  W D R+  +Q+  +KPTLPY Q+P+LE DG V+PQ+ A LR+VGK
Sbjct:    1 MAP-MKLTYFEFAALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPTLPYQQMPVLEVDGAVIPQSLAILRYVGK 73          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: UPI000C254320 (glutathione S-transferase-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C254320)

HSP 1 Score: 81.3 bits (199), Expect = 2.800e-18
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAP   LTYFN+ A  EP+R  L+  G  +ED R+ F+Q+  +KPT+P+GQ+P+LEF+GKV  Q+ +  R++ K
Sbjct:    1 MAPAYKLTYFNVTALGEPIRFLLSYGGLDFEDVRVEFEQWPALKPTMPFGQMPVLEFNGKVAHQSTSICRYLAK 74          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: A0A507DZ66_9FUNG (GST N-terminal domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DZ66_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 4.280e-18
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAP + LTYF++    EP+RL LA+ G  ++D R + DQ+A +KPT P+GQ+P+LE DGK + QT A +R++GK
Sbjct:    1 MAPTLKLTYFDMKGRGEPIRLALAVAGLAFDDHRFARDQWAAIKPTTPFGQVPVLEIDGKPITQTTAIMRYIGK 74          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: A0A7S1FFZ3_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FFZ3_NOCSC)

HSP 1 Score: 82.0 bits (201), Expect = 5.110e-18
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   19 LTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            LTYF+I AAAE VRL L M+G  +ED RI  D +  +KPT P+GQLPILE DGKVL Q+ A LR+ GK
Sbjct:    5 LTYFDIAAAAEKVRLALVMSGTEFEDNRIPRDAWPDLKPTTPWGQLPILEVDGKVLTQSYAMLRWAGK 72          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: UPI0014558F5A (glutathione S-transferase-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014558F5A)

HSP 1 Score: 83.2 bits (204), Expect = 5.690e-18
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAP+ TLTYF+I   AE +RL  A +G  +EDKRI+ + ++ +KP+ P+G+LPILEFDG VLP+T A   FV +
Sbjct:    9 MAPRFTLTYFDIRGKAEVIRLMFAASGVEFEDKRIAVEDWSKIKPSTPFGRLPILEFDGNVLPETKAIAGFVAR 82          
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Match: A0A1P8PEX2_LEPDE (Putative glutathione S-transferase sigma class member 1 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=A0A1P8PEX2_LEPDE)

HSP 1 Score: 81.3 bits (199), Expect = 2.400e-17
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYGQLPILEFDGKVLPQTGAQLRFVGK 222
            MAP   LTYFN+ A  EP+R  L+  G  +ED R+ F+Q+  +KPT+P+GQ+P+LEF+GKV  Q+ +  R++ K
Sbjct:    1 MAPAYKLTYFNVTALGEPIRFLLSYGGLDFEDVRVEFEQWPALKPTMPFGQMPVLEFNGKVAHQSTSICRYLAK 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18710.4633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1N8E7_9PHAE2.690e-2768.42Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
B1N8E6_9PHAE1.830e-2356.76Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
B1N8E8_9PHAE3.730e-2358.11Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
D8LK37_ECTSI1.050e-1956.76Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LHF0_ECTSI2.270e-1855.41Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
UPI000C2543202.800e-1847.30glutathione S-transferase-like n=1 Tax=Leptinotars... [more]
A0A507DZ66_9FUNG4.280e-1850.00GST N-terminal domain-containing protein n=1 Tax=P... [more]
A0A7S1FFZ3_NOCSC5.110e-1861.76Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
UPI0014558F5A5.690e-1852.70glutathione S-transferase-like n=1 Tax=Asterias ru... [more]
A0A1P8PEX2_LEPDE2.400e-1747.30Putative glutathione S-transferase sigma class mem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18710contigH-paniculata_contig18710:3717..4591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score78.6
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog6326.BUX.s01254.332
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004364,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009987,GO:0010035,GO:0010225,GO:0010259,GO:0010286,GO:0016740,GO:0016765,GO:0032501,GO:0032502,GO:0034641,GO:0042221,GO:0042493,GO:0042542,GO:0043603,GO:0044237,GO:0046677,GO:0048856,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901564,GO:1901700
EggNOG free text desc.transferase activity
EggNOG OGs1M82X@119089,39STQ@33154,3BJVZ@33208,3CR9P@33213,40DGQ@6231,KOG1695@1,KOG1695@2759
EC2.5.1.18
COG Functional cat.O
Best tax levelChromadorea
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons2
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929442.1571593-CDS-H-paniculata_contig18710:3716..38521622929442.1571593-CDS-H-paniculata_contig18710:3716..3852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18710 3717..3852 +
1691480863.0123832-CDS-H-paniculata_contig18710:3716..38521691480863.0123832-CDS-H-paniculata_contig18710:3716..3852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18710 3717..3852 +
1622929442.170858-CDS-H-paniculata_contig18710:4505..45911622929442.170858-CDS-H-paniculata_contig18710:4505..4591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18710 4506..4591 +
1691480863.0224094-CDS-H-paniculata_contig18710:4505..45911691480863.0224094-CDS-H-paniculata_contig18710:4505..4591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18710 4506..4591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18710.4633.1prot_H-paniculata_contig18710.4633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18710 3717..4591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18710.4633.1

>prot_H-paniculata_contig18710.4633.1 ID=prot_H-paniculata_contig18710.4633.1|Name=mRNA_H-paniculata_contig18710.4633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MAPKMTLTYFNIDAAAEPVRLCLAMTGQTWEDKRISFDQFALMKPTLPYG
QLPILEFDGKVLPQTGAQLRFVGK
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mRNA from alignment at H-paniculata_contig18710:3717..4591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18710.4633.1 ID=mRNA_H-paniculata_contig18710.4633.1|Name=mRNA_H-paniculata_contig18710.4633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=875bp|location=Sequence derived from alignment at H-paniculata_contig18710:3717..4591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCCCAAGATGACTCTGACCTACTTCAATATAGACGCCGCTGCCGA GCCTGTGCGTCTCTGCCTCGCCATGACCGGTCAGACTTGGGAAGACAAGA GGATCAGTTTTGACCAGTTTGCTCTCATGAAGCCAAGTGAGTGAGCTCTA TGATAGGGCACTCACATCAAGACCCCAACGCTACCGATTTCGGGTATTCG CGAACCCGATTCCGCATATATTCCGCTCTCGAAACTTGCTACAGGCAGAA ATATCCCTCATATCAGGCAGTTGCACCATATGCGCTCAGATCTTGGGAGT GTTTCGAGGTCCAGAGCATTTGAGTTCGGCCAAATTCCCATTCCCACAAA ACTGGGATCGTGTCCCAGGATCGCGCAGACTCTATTGTAAATACCCTGTA CATCAGTATTCCATGCATTGCGTTTCCCCCGTTCGCTGAATACAATGATT TTGTCTGTATTTGGGGTGCTACTCCTCGTATGCTTGACTTGCAATATGAA CTCTACATCTTTGCGTGGGGTGCAGACTATAGTGTTTTCCGTTTGATGCC CGTCAGTAGCGTACGAGATGTGTTGAGAGACATGAGTCTTTTTTCAAAGG GTGTTTTTGATCATGTCGAGTATTTTTTTGGTCGCGCAGCAAGCATCAAG TCGACGAATAAAAGTGCACAAAAATGGCGACACAATGTACGTGCAGTGTG ACTGCGAATTCCCGCAACTTCCTCGTGGCATTTTTCACCAGTTCGCCCCT TTCCTTTTCTCACGTCGATTGTCGTTGCTCTGGTCCCAGCTCTTCCATAT GGTCAGCTACCCATCCTTGAGTTCGATGGGAAGGTGCTTCCCCAGACCGG AGCCCAGCTGCGTTTCGTCGGCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18710:3717..4591+

>mRNA_H-paniculata_contig18710.4633.1 ID=mRNA_H-paniculata_contig18710.4633.1|Name=mRNA_H-paniculata_contig18710.4633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig18710:3717..4591+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCCCAAGATGACTCTGACCTACTTCAATATAGACGCCGCTGCCGA
GCCTGTGCGTCTCTGCCTCGCCATGACCGGTCAGACTTGGGAAGACAAGA
GGATCAGTTTTGACCAGTTTGCTCTCATGAAGCCAAATGGCTCCCAAGAT
GACTCTGACCTACTTCAATATAGACGCCGCTGCCGAGCCTGTGCGTCTCT
GCCTCGCCATGACCGGTCAGACTTGGGAAGACAAGAGGATCAGTTTTGAC
CAGTTTGCTCTCATGAAGCCAACTCTTCCATATGGTCAGCTACCCATCCT
TGAGTTCGATGGGAAGGTGCTTCCCCAGACCGGAGCCCAGCTGCGTTTCG
TCGGCAAACTCTTCCATATGGTCAGCTACCCATCCTTGAGTTCGATGGGA
AGGTGCTTCCCCAGACCGGAGCCCAGCTGCGTTTCGTCGGCAAA
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