prot_H-paniculata_contig18709.4631.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18709.4631.1
Unique Nameprot_H-paniculata_contig18709.4631.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length126
Homology
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 109 bits (273), Expect = 3.580e-27
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            VY  ++KSE     K F+  V   +  +I  +RSD+GGE+    F  FC E+G++ + +  YTPQQNGV ER  R++ +MAR+ +I  D+ +++WAEAV +AVY LNR PT+   + TP E
Sbjct:   25 VYFLKEKSETFGIFKNFKLLVENQSGQKIKILRSDRGGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIE 145          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 114 bits (285), Expect = 5.580e-27
Identity = 60/121 (49.59%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            +Y  ++KSEAL  LK+F+    K +   +  +RSD+GGEYT K F  FC E GI  + +A YTPQQNGVAER  R+I  MAR+ +    + R +WAEAVR AVY LNR PT+     TP E
Sbjct:  425 IYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNE 545          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A5N6NZN2_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZN2_9ASTR)

HSP 1 Score: 114 bits (284), Expect = 7.460e-27
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            VY  + K+EA    K+F+  V K ++L++  +R+D+GGE+  K F  FC + GIK++ +A YTPQQNGV ER  R++ ++ R+ + T D+    W EAVR AVY LNR  TR   ++TPYE
Sbjct:  563 VYLLKSKNEAFLNFKKFKATVEKESELKVGTLRTDRGGEFVSKEFLQFCEDHGIKRQLTAPYTPQQNGVVERRNRTVMEVTRSFLKTMDVPETLWGEAVRHAVYILNRVSTRSVKDQTPYE 683          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A4Y1RH27_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RH27_PRUDU)

HSP 1 Score: 112 bits (281), Expect = 1.930e-26
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            VY  R KS+AL   K+F+  V   +  ++  +RSD+GGEYT   F  FC   GI+++ +  YTPQQNGVAER  R+I +MA+  M+   +   +WAEAV ++VY LNR PT+  ++KTP+E
Sbjct:  565 VYFLRHKSDALCVFKKFKATVELQSGYKLKQLRSDRGGEYTSVEFERFCDNVGIERQLTTPYTPQQNGVAERKNRTIVEMAKCLMLEKKIPLDFWAEAVNTSVYILNRCPTKALSKKTPFE 685          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6V7NQR9_ANACO (Integrase catalytic domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NQR9_ANACO)

HSP 1 Score: 110 bits (275), Expect = 1.980e-26
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            +Y   QKSEA     QF+  V K +  +I  +R+D+GGE+T   F ++C E GIK++ +  +TPQQNGVAER  R+I +MAR+ M    +  ++WAEAV + V+ LNR+PT+    KTPYE
Sbjct:  238 IYFLEQKSEAFSIFIQFKAYVEKQSGHQIKILRTDRGGEFTSHSFNNYCKENGIKRQLTVRHTPQQNGVAERKNRTIVEMARSMMKGKGLPNQFWAEAVNTTVFILNRSPTKAVQNKTPYE 358          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 112 bits (280), Expect = 2.680e-26
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            +Y  ++KSEAL  L++F+    K +   +  +RSD+GGEYT K F  FC E GI  + +A YTPQQNGVAER  R+I  MAR+ +    + R +WAEAVR AVY LNR PT+     TP E
Sbjct:  320 IYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNE 440          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 112 bits (280), Expect = 2.700e-26
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            +Y  ++KSEAL  L++F+    K +   +  +RSD+GGEYT K F  FC E GI  + +A YTPQQNGVAER  R+I  MAR+ +    + R +WAEAVR AVY LNR PT+     TP E
Sbjct:  424 IYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNE 544          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6P5MS85_ARADU (DNA-directed RNA polymerase subunit n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5MS85_ARADU)

HSP 1 Score: 112 bits (280), Expect = 2.730e-26
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            VY  +QKSE      +F+++V    + +I  +RSD GGEYT K F+  C + GIKQ+F+  YTPQQNGV+ER  RSI +M R  +    + + +WAEAV +AV+ LNR PT+  N++T +E
Sbjct:  985 VYFLKQKSEVDEVFLRFKQEVENEANCKIKTVRSDNGGEYTSKRFKAICEDSGIKQQFTVPYTPQQNGVSERKNRSIVEMGRCMLQGKQLPKSFWAEAVNTAVFLLNRLPTKALNKQTSFE 1105          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A8J5L921_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L921_ZINOF)

HSP 1 Score: 103 bits (258), Expect = 3.170e-26
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 0
Query:   10 KSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            K++A    K+F+  +    + +I  +R+D+GGE+    F  FC ++GI++  +A YTPQQNGV ER  R++  MAR+ + +  M  R WAEAVR AVY LNR PT+   E TP+E
Sbjct:    9 KNDAFRVFKKFKFLIENKTEYKIKALRTDRGGEFLSTEFTQFCEDEGIERHLTAAYTPQQNGVVERRNRTVMVMARSLLKSTHMPARLWAEAVRHAVYLLNRLPTKALGECTPFE 123          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A0K8UZ07_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8UZ07_BACLA)

HSP 1 Score: 106 bits (264), Expect = 6.580e-26
Identity = 56/121 (46.28%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    4 VYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYE 124
            VY  +QKSE     K F+  V      +I  +RSD G EYT   F  F  E GIK++ +  YTPQQNGVAER  R+I +MAR+ ++ A++    W EAV +AVY  NRAPT+     TPYE
Sbjct:    4 VYCIKQKSEVFEKFKTFKNLVENQTKKKIKKLRSDNGTEYTNNKFSEFLNECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHAELEEELWGEAVHTAVYIRNRAPTKLLKNSTPYE 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0WJT9_9ASPA3.580e-2742.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2WSU7_HIBSY5.580e-2749.59Integrase catalytic domain-containing protein n=2 ... [more]
A0A5N6NZN2_9ASTR7.460e-2744.63Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A4Y1RH27_PRUDU1.930e-2645.45Multidrug resistance-associated protein 9 n=1 Tax=... [more]
A0A6V7NQR9_ANACO1.980e-2645.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3ACL1_HIBSY2.680e-2648.76Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A6A3BY51_HIBSY2.700e-2648.76Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A6P5MS85_ARADU2.730e-2645.45DNA-directed RNA polymerase subunit n=1 Tax=Arachi... [more]
A0A8J5L921_ZINOF3.170e-2643.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A0K8UZ07_BACLA6.580e-2646.28Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 6..125
e-value: 4.9E-23
score: 83.4
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 13..80
e-value: 1.8E-14
score: 53.9
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..125
score: 15.228
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 36..123
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 36..123
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18709contigH-paniculata_contig18709:4385..4762 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18709.4631.1mRNA_H-paniculata_contig18709.4631.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18709 4256..4975 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18709.4631.1 ID=prot_H-paniculata_contig18709.4631.1|Name=mRNA_H-paniculata_contig18709.4631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRH
FCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAE
AVRSAVYCLNRAPTRPHNEKTPYEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf