mRNA_H-paniculata_contig187.4628.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig187.4628.1
Unique NamemRNA_H-paniculata_contig187.4628.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig187.4628.1 vs. uniprot
Match: A0A6H5KX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX85_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.010e-22
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   61 GPAIDIPLLLREKGGHIRVSELWEEYRAMFGATQYTLRDMFAMVQGGSIPGVVHEPPAGIRLLPSS 258
            GPAIDIP LL E+GG IR++ LWE Y+A FG T+YTL+D+FAMV+ G IP VVHEPPAGIRLLPS+
Sbjct:  248 GPAIDIPQLLLERGGRIRITALWEAYQARFGETRYTLKDLFAMVKAGEIPFVVHEPPAGIRLLPSA 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig187.4628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX85_9PHAE4.010e-2271.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig187contigH-paniculata_contig187:21531..22500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size422
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.2956448-CDS-H-paniculata_contig187:21530..217661622929441.2956448-CDS-H-paniculata_contig187:21530..21766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig187 21531..21766 -
1691480862.6895673-CDS-H-paniculata_contig187:21530..217661691480862.6895673-CDS-H-paniculata_contig187:21530..21766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig187 21531..21766 -
1622929441.3205745-CDS-H-paniculata_contig187:22316..225001622929441.3205745-CDS-H-paniculata_contig187:22316..22500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig187 22317..22500 -
1691480862.7042115-CDS-H-paniculata_contig187:22316..225001691480862.7042115-CDS-H-paniculata_contig187:22316..22500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig187 22317..22500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig187.4628.1prot_H-paniculata_contig187.4628.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig187 21531..22500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig187.4628.1

>prot_H-paniculata_contig187.4628.1 ID=prot_H-paniculata_contig187.4628.1|Name=mRNA_H-paniculata_contig187.4628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MLRTGWGAAVGVVPRARQERGPAIDIPLLLREKGGHIRVSELWEEYRAMF
GATQYTLRDMFAMVQGGSIPGVVHEPPAGIRLLPSSAGGLTSPSADNVTT
ITAAAINGAGVAASAGVAAADTAMDGAYGGGDRGGGEGGG
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mRNA from alignment at H-paniculata_contig187:21531..22500-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig187.4628.1 ID=mRNA_H-paniculata_contig187.4628.1|Name=mRNA_H-paniculata_contig187.4628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=970bp|location=Sequence derived from alignment at H-paniculata_contig187:21531..22500- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACGAACAGGGTGGGGGGCGGCGGTGGGGGTGGTCCCTAGGGCTAG
GCAGGAGCGGGGACCCGCGATTGATATCCCGCTTTTGCTTCGAGAGAAAG
GAGGGCACATTCGTGTGTCCGAACTGTGGGAGGAATATCGGGCTATGTTT
GGGGCCACCCAATACACCCTGAGGGATATGTTCGGTGAGTGGGTCTGGGT
GGGAGGACCGCTTCGGTCGGGGGGGTGTTGGGTTTATTGCCGTTTTGACC
CGTGTGTCGAGCGAGTGAGTTCTACCCCCGCCCCCCATAAAGCCACCATC
ATTACGATAGGTTAATATAATAAATGCTTCTGATGCAATGCTGTCCGATT
CCCACCGGATCCCGAAAAAGAGATTGGCCTCGTGGTCAAACAATGAGCGA
CTCGAGTCGACAATAAAGACAGTGGTGCTAAAAAGAAAAGAAATGAAGGG
TGTGGAGTATGTGAAGTGTGTGAAGTGTATGTCCCATCTGAAGCAATTCG
GTACTAATTGTAATTTCGAAGAATATATACACCGTCGACCCACCATACTT
TTCCTGACAGCTTATAGACACGCACAAAAACGTAGAAACCTACCTGGTAG
CCCACTTTCGTTCTCCCCCCCATCCCTCCACCCTCCCCGTCTGCCGGTTT
TTCGCACATCCTCGCTGACGTAAATCATCACACCTACGTGCGCCCACCTC
CCAAATGCCAACAACAATGAACAACACCCCCAAGCTATGGTACAAGGCGG
ATCCATTCCTGGTGTGGTGCACGAGCCCCCTGCCGGAATCCGGCTGTTAC
CTTCCAGCGCCGGCGGCCTGACATCACCATCTGCGGACAACGTCACAACT
ATCACAGCCGCCGCCATAAATGGAGCCGGCGTTGCTGCTTCGGCAGGCGT
CGCGGCAGCGGACACAGCAATGGATGGGGCTTATGGCGGTGGTGATCGCG
GAGGAGGTGAAGGTGGTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig187:21531..22500-

>mRNA_H-paniculata_contig187.4628.1 ID=mRNA_H-paniculata_contig187.4628.1|Name=mRNA_H-paniculata_contig187.4628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig187:21531..22500- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACGAACAGGGTGGGGGGCGGCGGTGGGGGTGGTCCCTAGGGCTAG
GCAGGAGCGGGGACCCGCGATTGATATCCCGCTTTTGCTTCGAGAGAAAG
GAGGGCACATTCGTGTGTCCGAACTGTGGGAGGAATATCGGGCTATGTTT
GGGGCCACCCAATACACCCTGAGGGATATGTTCGATGCTACGAACAGGGT
GGGGGGCGGCGGTGGGGGTGGTCCCTAGGGCTAGGCAGGAGCGGGGACCC
GCGATTGATATCCCGCTTTTGCTTCGAGAGAAAGGAGGGCACATTCGTGT
GTCCGAACTGTGGGAGGAATATCGGGCTATGTTTGGGGCCACCCAATACA
CCCTGAGGGATATGTTCGCTATGGTACAAGGCGGATCCATTCCTGGTGTG
GTGCACGAGCCCCCTGCCGGAATCCGGCTGTTACCTTCCAGCGCCGGCGG
CCTGACATCACCATCTGCGGACAACGTCACAACTATCACAGCCGCCGCCA
TAAATGGAGCCGGCGTTGCTGCTTCGGCAGGCGTCGCGGCAGCGGACACA
GCAATGGATGGGGCTTATGGCGGTGGTGATCGCGGAGGAGGTGAAGGTGG
TGGACTATGGTACAAGGCGGATCCATTCCTGGTGTGGTGCACGAGCCCCC
TGCCGGAATCCGGCTGTTACCTTCCAGCGCCGGCGGCCTGACATCACCAT
CTGCGGACAACGTCACAACTATCACAGCCGCCGCCATAAATGGAGCCGGC
GTTGCTGCTTCGGCAGGCGTCGCGGCAGCGGACACAGCAATGGATGGGGC
TTATGGCGGTGGTGATCGCGGAGGAGGTGAAGGTGGTGGA
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