mRNA_H-paniculata_contig18692.4624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A6H5L064_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L064_9PHAE) HSP 1 Score: 161 bits (408), Expect = 4.160e-46 Identity = 82/127 (64.57%), Postives = 87/127 (68.50%), Query Frame = 1
Query: 7 RFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
RF VDFYHA+R+A EKARVHREWSAGR+HLICAT+AFGM GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGL SKCIVFFAYRDK+RLE
Sbjct: 268 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGM-------------------------------------GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 357
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.690e-43 Identity = 82/127 (64.57%), Postives = 87/127 (68.50%), Query Frame = 1
Query: 7 RFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
RF VDFYHA+R+A EKARVHREWSAGR+HLICAT+AFGM GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGL SKCIVFFAYRDK+RLE
Sbjct: 848 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGM-------------------------------------GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 937
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: K0SNN9_THAOC (DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNN9_THAOC) HSP 1 Score: 135 bits (339), Expect = 3.320e-34 Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = 1
Query: 16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
V FYHA+ EKAR H EWS+GR+ ++CAT+AFGMG S+ +L+ +S T P ++SL H+ ++KPDVR+V+H+SMPK++TH+YQESGRAGRDG + CI+F++Y+DK LE
Sbjct: 725 VSFYHADVDPAEKARRHNEWSSGRIAVLCATIAFGMGS-------KSSALLFCAFSATCPSDPLLSLFRHS---VDKPDVRFVMHYSMPKSITHYYQESGRAGRDGNNADCILFYSYKDKKTLE 838
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A425DFL9_9STRA (DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DFL9_9STRA) HSP 1 Score: 115 bits (288), Expect = 4.200e-28 Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 4 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSR 381
S+ V FYH+E A+EK+ H+ WS+GR+ LI AT+AFGM GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D SR
Sbjct: 199 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSR 287
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A1E7EUD2_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUD2_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.810e-27 Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
V +YHAE +E+ R H++WS+GR++++CATVAFGM GI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG + CI+F++Y+DK LE
Sbjct: 727 VSYYHAELDPQERERRHKQWSSGRINVLCATVAFGM-------------------------------------GIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGDNADCILFYSYKDKQVLE 813
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A6A5A8L4_9STRA (ATP-dependent DNA helicase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8L4_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.000e-27 Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 4 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSR 381
S+ V FYH+E A+EK+ H+ WS+GR+ LI AT+AFGM GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D SR
Sbjct: 317 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSR 405
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S4EMT8_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMT8_9STRA) HSP 1 Score: 115 bits (287), Expect = 3.370e-27 Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
V FYHA+ +E+ H++WS GR++++CATVAFGM GI+KPDVRYVIH+SMPK+LTH+YQESGRAGRDG ++C++F++Y+DK LE
Sbjct: 777 VSFYHADLDPKEREHRHKQWSVGRINVLCATVAFGM-------------------------------------GIDKPDVRYVIHYSMPKSLTHYYQESGRAGRDGEDAECVLFYSYKDKQVLE 863
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S3VCC4_9STRA (ATP-dependent DNA helicase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCC4_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.730e-27 Identity = 54/124 (43.55%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
V +YHA+ E+ + H EW +GR++L+CAT+AFGM G++KPDVRYV+H+SMPK++TH+YQESGRAGRDG P+ CI+F+AY+DK LE
Sbjct: 94 VSYYHADLEIHERQKRHHEWLSGRINLLCATIAFGM-------------------------------------GVDKPDVRYVMHYSMPKSITHYYQESGRAGRDGDPADCILFYAYKDKKILE 180
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A397AAD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AAD3_9STRA) HSP 1 Score: 112 bits (281), Expect = 6.900e-27 Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1
Query: 4 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRD 372
S+ V FYH+E A+EK+ H+ WS+GR+ LI AT+AFGM GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D
Sbjct: 303 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKD 388
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S0KZB9_9STRA (DNA helicase (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KZB9_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.140e-26 Identity = 53/120 (44.17%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDK 375
V +YHAE +E+ H WS GR+ ++CAT+AFGM GI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG + CI+F+AY+DK
Sbjct: 191 VSYYHAELDQQERFNRHHAWSNGRISVLCATIAFGM-------------------------------------GIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGAKADCILFYAYKDK 273 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18692.4624.1 >prot_H-paniculata_contig18692.4624.1 ID=prot_H-paniculata_contig18692.4624.1|Name=mRNA_H-paniculata_contig18692.4624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp VSRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLback to top mRNA from alignment at H-paniculata_contig18692:162..677+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18692.4624.1 ID=mRNA_H-paniculata_contig18692.4624.1|Name=mRNA_H-paniculata_contig18692.4624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig18692:162..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18692:162..677+ >mRNA_H-paniculata_contig18692.4624.1 ID=mRNA_H-paniculata_contig18692.4624.1|Name=mRNA_H-paniculata_contig18692.4624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig18692:162..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |