mRNA_H-paniculata_contig18677.4620.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18677.4620.1
Unique NamemRNA_H-paniculata_contig18677.4620.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18677.4620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18677contigH-paniculata_contig18677:3963..4648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18677.4620.1prot_H-paniculata_contig18677.4620.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18677 3989..4648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.5902207-UTR-H-paniculata_contig18677:3962..39881622929440.5902207-UTR-H-paniculata_contig18677:3962..3988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18677 3963..3988 +
1691480862.4140773-UTR-H-paniculata_contig18677:3962..39881691480862.4140773-UTR-H-paniculata_contig18677:3962..3988Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18677 3963..3988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.6031592-CDS-H-paniculata_contig18677:3988..40731622929440.6031592-CDS-H-paniculata_contig18677:3988..4073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18677 3989..4073 +
1691480862.422739-CDS-H-paniculata_contig18677:3988..40731691480862.422739-CDS-H-paniculata_contig18677:3988..4073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18677 3989..4073 +
1622929440.698227-CDS-H-paniculata_contig18677:4541..46481622929440.698227-CDS-H-paniculata_contig18677:4541..4648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18677 4542..4648 +
1691480862.4339907-CDS-H-paniculata_contig18677:4541..46481691480862.4339907-CDS-H-paniculata_contig18677:4541..4648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18677 4542..4648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18677.4620.1

>prot_H-paniculata_contig18677.4620.1 ID=prot_H-paniculata_contig18677.4620.1|Name=mRNA_H-paniculata_contig18677.4620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MLKRLEDEAGHATGDGLSCQTMGRKMLGGKASDTFMSNPWLIYRGFEDMQ
KEMRRDYITTYRT*
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mRNA from alignment at H-paniculata_contig18677:3963..4648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18677.4620.1 ID=mRNA_H-paniculata_contig18677.4620.1|Name=mRNA_H-paniculata_contig18677.4620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=686bp|location=Sequence derived from alignment at H-paniculata_contig18677:3963..4648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACACCGAGGTTGCAGTGCCGGGCATGCTGAAGCGGTTGGAGGATGAA
GCCGGCCACGCCACTGGCGATGGACTGTCTTGTCAGACTATGGGCCGCAA
AATGCTGGGAGGTGAGCGTTAGAACCGTAACACCACTTGGAAGAGTTGGA
GGGGACATTTCGTTACGCTGTGTAGTGTTGAGGAGACAACATGAGTATGG
GCGACCTCGTGAGAAACCTTTCGTGTTGCCTAGTTCATTGTTGCTGTCTT
TTCTAATGACTATATTCTCTTCGGCCTGAAGACTGCCGAAATATCGAATA
ATCGCCTTCATTTTAGACGACTCTTTCTTTTCAAGGAAAGCAAAACAACA
ATCCAACAGGATCAACCCAACATATGATGTACGATTAGCAATAGCAGACG
ATATTGCTTTAGTAGGATCTCCTTTGTTGGCCTGTTCGCTGCTGGCTTCG
ACTGCTATCGCTTCACAAAACAGTTGGTGCGCTCAAACCCATAGTACTTA
AGTGTGATGCTCCGAAGCTACGGTGCACTGTACAAAGAGTACAATTGTGC
TTAGTTCTTAACGTCTATCGTGCAAGCAGGGAAGGCTTCCGACACGTTCA
TGTCAAATCCCTGGTTAATATATCGAGGCTTCGAAGACATGCAGAAGGAG
ATGAGGAGGGATTACATTACGACTTACCGGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18677:3963..4648+

>mRNA_H-paniculata_contig18677.4620.1 ID=mRNA_H-paniculata_contig18677.4620.1|Name=mRNA_H-paniculata_contig18677.4620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig18677:3963..4648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAAGCGGTTGGAGGATGAAGCCGGCCACGCCACTGGCGATGGACT
GTCTTGTCAGACTATGGGCCGCAAAATGCTGGGAGATGCTGAAGCGGTTG
GAGGATGAAGCCGGCCACGCCACTGGCGATGGACTGTCTTGTCAGACTAT
GGGCCGCAAAATGCTGGGAGGGAAGGCTTCCGACACGTTCATGTCAAATC
CCTGGTTAATATATCGAGGCTTCGAAGACATGCAGAAGGAGATGAGGAGG
GATTACATTACGACTTACCGGACGTGAGGAAGGCTTCCGACACGTTCATG
TCAAATCCCTGGTTAATATATCGAGGCTTCGAAGACATGCAGAAGGAGAT
GAGGAGGGATTACATTACGACTTACCGGACGTGA
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