mRNA_H-paniculata_contig18673.4619.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18673.4619.1
Unique NamemRNA_H-paniculata_contig18673.4619.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18673.4619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18673contigH-paniculata_contig18673:4263..4593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size333
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.5177217-UTR-H-paniculata_contig18673:4262..42901622929440.5177217-UTR-H-paniculata_contig18673:4262..4290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18673 4263..4290 +
1691480862.3934555-UTR-H-paniculata_contig18673:4262..42901691480862.3934555-UTR-H-paniculata_contig18673:4262..4290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18673 4263..4290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.5404527-CDS-H-paniculata_contig18673:4290..45931622929440.5404527-CDS-H-paniculata_contig18673:4290..4593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18673 4291..4593 +
1691480862.4047692-CDS-H-paniculata_contig18673:4290..45931691480862.4047692-CDS-H-paniculata_contig18673:4290..4593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18673 4291..4593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18673.4619.1prot_H-paniculata_contig18673.4619.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18673 4291..4593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18673.4619.1

>prot_H-paniculata_contig18673.4619.1 ID=prot_H-paniculata_contig18673.4619.1|Name=mRNA_H-paniculata_contig18673.4619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MRLSISLCGMLEVRQVQASLACFISVTLKPSARRFSAENVSLPTLTSLGL
VSAAMHPAMLTNSKNNFLHIKKLICTPSNFGTPLLTCVRYRISVANLSLP
L
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mRNA from alignment at H-paniculata_contig18673:4263..4593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18673.4619.1 ID=mRNA_H-paniculata_contig18673.4619.1|Name=mRNA_H-paniculata_contig18673.4619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=331bp|location=Sequence derived from alignment at H-paniculata_contig18673:4263..4593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGCACTCGGGGACTGCAGGTCATAGATGCGACTGAGTATATCTCTTT
GTGGAATGCTCGAAGTGAGGCAAGTCCAGGCGTCCCTAGCTTGCTTTATT
TCTGTCACGTTAAAACCTTCTGCGCGTAGATTTTCTGCGGAAAACGTCTC
GCTCCCTACTTTGACTTCTCTCGGACTGGTGAGTGCAGCAATGCACCCTG
CGATGTTGACAAACTCCAAAAATAACTTTCTCCATATCAAGAAGTTGATC
TGTACTCCATCAAACTTCGGTACGCCGCTTTTGACGTGTGTAAGGTACCG
TATATCTGTCGCAAACTTATCGCTACCTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig18673:4263..4593+

>mRNA_H-paniculata_contig18673.4619.1 ID=mRNA_H-paniculata_contig18673.4619.1|Name=mRNA_H-paniculata_contig18673.4619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig18673:4263..4593+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACTGAGTATATCTCTTTGTGGAATGCTCGAAGTGAGGCAAGTCCA
GGCGTCCCTAGCTTGCTTTATTTCTGTCACGTTAAAACCTTCTGCGCGTA
GATTTTCTGCGGAAAACGTCTCGCTCCCTACTTTGACTTCTCTCGGACTG
GTGAGTGCAGCAATGCACCCTGCGATGTTGACAAACTCCAAAAATAACTT
TCTCCATATCAAGAAGTTGATCTGTACTCCATCAAACTTCGGTACGCCGC
TTTTGACGTGTGTAAGGTACCGTATATCTGTCGCAAACTTATCGCTACCT
CTTATGCGACTGAGTATATCTCTTTGTGGAATGCTCGAAGTGAGGCAAGT
CCAGGCGTCCCTAGCTTGCTTTATTTCTGTCACGTTAAAACCTTCTGCGC
GTAGATTTTCTGCGGAAAACGTCTCGCTCCCTACTTTGACTTCTCTCGGA
CTGGTGAGTGCAGCAATGCACCCTGCGATGTTGACAAACTCCAAAAATAA
CTTTCTCCATATCAAGAAGTTGATCTGTACTCCATCAAACTTCGGTACGC
CGCTTTTGACGTGTGTAAGGTACCGTATATCTGTCGCAAACTTATCGCTA
CCTCTT
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