mRNA_H-paniculata_contig1867.4617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1867.4617.1
Unique NamemRNA_H-paniculata_contig1867.4617.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1867.4617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1867contigH-paniculata_contig1867:1761..7053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929440.3322897-CDS-H-paniculata_contig1867:1760..18991622929440.3322897-CDS-H-paniculata_contig1867:1760..1899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1867 1761..1899 +
1691480862.3508868-CDS-H-paniculata_contig1867:1760..18991691480862.3508868-CDS-H-paniculata_contig1867:1760..1899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1867 1761..1899 +
1622929440.3513746-CDS-H-paniculata_contig1867:6956..70511622929440.3513746-CDS-H-paniculata_contig1867:6956..7051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1867 6957..7051 +
1691480862.3595555-CDS-H-paniculata_contig1867:6956..70511691480862.3595555-CDS-H-paniculata_contig1867:6956..7051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1867 6957..7051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1867.4617.1prot_H-paniculata_contig1867.4617.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1867 1761..7051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1867.4617.1

>prot_H-paniculata_contig1867.4617.1 ID=prot_H-paniculata_contig1867.4617.1|Name=mRNA_H-paniculata_contig1867.4617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
TIPGAFPKRIREGIPTCSGNWARVWLLHARGVIRFCLWTVELLSTTGGRH
GNGPRISLLIQYKKIRAKYKGERRLGNN
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mRNA from alignment at H-paniculata_contig1867:1761..7053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1867.4617.1 ID=mRNA_H-paniculata_contig1867.4617.1|Name=mRNA_H-paniculata_contig1867.4617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5293bp|location=Sequence derived from alignment at H-paniculata_contig1867:1761..7053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGATACCGGGGGCGTTTCCGAAACGCATTCGAGAGGGTATCCCCACATG
TTCGGGAAATTGGGCCCGAGTTTGGCTGCTGCACGCGCGGGGAGTGATAC
GATTTTGCCTGTGGACAGTGGAATTGCTGTCGACGACAGGTGTGTTGGAG
AAGGGAGTGCCCATGATACCAATACATATGTTTACTGTGGTTGGGTACGT
TTCGTAGGTCAGGATCTTGAATGCTTTTTGTGGAGCAGGAAATAGGATAG
AACTACAAACTTGTTTATTTTCTGGCACAGCGAAAGTCTTCGATTTTGAC
AGCTTTTTGTGTGTTTGCTTTCTGATCATGTTTCTGAATCGACTGCCACA
TCATTCCCGTCTGCACATTGTCGGAGGGGAAGGGTAGCAACAATAGTATC
GATACATGTGCTTTGAAGCGTCGCACAGAAATCTTATTAGGTGTCTTGCC
GTTCCATTCGGAGTAGATAATGGATAAGGTAGTCATTCGAGTGGTTTCGC
CATATAAGAATTAACCCTTGTGAGGTTTACACCTCGAAAAAAGGCGTTAA
TACGCCGGAAAACAACAGTGAGGGGTATTGTACGGGCGAGGGAGTAATCT
CTCGTCCTGTTTAAGAAACGGGTTGACTGTTGTGTCGATATCTTTGCCCT
CCGCCGTAAGAGCACCAGTGTTTGGTTCGCGCTCATCTTGCGCCTCGAAG
GAGTTGACGAATATTCATGTTTTCTCCAGTTTTCGATAGATAGTATTTTC
AAACTGTGTATTTTCGGCAACTACGGTGCTATCAATCGTTACAACGAAAG
TCTTGCCATTGGAAAGATCTTCACCCCCGGGACAAATACGAATGGAACAT
TCGCAACTATCTCGAGCTTATCATTATTTGTCTTGAGTAGACACGTATTT
ATTCGTTTACAAGTCTATGCAAGTTAACTTTCAGGTACCATCGCATAGGC
CTACCTTTGCATGGTACGGAATCCATCAGTTCCGTCGTGCATCGATCTCA
CCTAACTTTTTTGTTGTTGACCACTCGTTGCCTGTTTCTACGGTCATTGT
GGTTATCGTATTACTCACTACACCAGACAGATAAATTACAGCCGATGCAG
CGAATATAGATGGGATACAGTACATGACATACAGATTGTGTCAATCTGCC
GGACAGTACAACACACAAAGACTAGCTTGTACCTATAAGCATGCTACCTC
TATCAAACATTGACTCAAGACTCTCTGGTCTTCTTTCTATTTCTGCGAGT
ACTTTAGTCGTCGTCTACTCCATTGTGCATAGGCACAGACAACGACCCCG
GCAACCTCGGACGCCGAAACCGGCCCGTGGACTCCACACACTGTGGGTCC
TTAATACCACACGCAAGTTCAGCGACGTGTCCATACCTAGGTGCAGCTGG
AATCTACACTACCTGAGTAGAGGGAACGAGGTTGTCCAGAGTATTTTCAC
TTGCACCCAATATTTTTGTGTGGGCGAGAAATCTTTGCCGGCACCAACGC
CATTCGGGACTCACTAATTGCCACCTGTTCGGTGTGCTTATGGCTGCGGG
TGGTGCGCCTCCGTTGGCCTGGCCCAATCCCCTGCGACGCCCCCCCTCTC
CCGCTCTTTTCTATGAATTTTCCAGTTTATTCAAAACAAATCTGCGCTTG
GACTAGTTTGTTTTGATCAGTTTTTTAACAGGGCCGACATGCCGTGCTGG
AGTCTTCGTTGCGCTGGACCTGTCAGCGAGCCAAGTGTATTTCGCTATCG
GCGTCGCAGTCTCTGAGTATGCGTCGTTTAACGCGAATAAAGACATATGC
AAAATTCTTGAAATGTTATATCTAAAATATTCATGTCGTGTATTCGAAAA
TTATAAAAATTGAATAATGTTCTCAAATCGCCACCTACCTAACCCGGAGG
GGAATATTGCAAGATGGCGAGAGAAAAAAATAATTGAGGCAAAACTGGGC
CGAAATCAGTACATCTCCACCGAACGAAAAGCTCCCAGCATAGGTTGAGG
TAAAACCGAAGACCTTTGCCTTTCTCTATCCACCGCCCTCACATGCACAC
GACGAGCGGAAAGTCAGTGTTTCTATGCTGCTGCCGCTCCCAAAATTTGC
AACCCTTGTTGCACACAAAGGACGGAAACGGACAGAACAGACGGGCGACC
GACTGGGGTTCAGTCAGGCAGAATCGAGCGCCAAACGATTCGTAAAAAGA
AAAAAAAAAAAAAAATCACTGCCAATTGGACGACGAACCGGTTATGGTTG
AGTTCTGTCATGTGAAGAGCTCTGACAAAATTCAAAATTCCACATCTTTC
ACAGGGCTGAAGGAGACTATTTTCAAAATAATTTTTGGCATGACCGTTGT
ATTTTTTTATGAGCCAAACGTCTAGTAAGACACACGGATACGAGTTTTTG
CGGAATCTGAGAGCACGACTTCGCTCGAAAATCACATAAAAATATTCCAA
GTAAGGGTTTGAGCAGCAATTTCCAGGGAAAATGCGAGGGAATGGCGGGG
TATTTGTCACGAAAAGGTCAGCAAGCGTATGGACGACGTGCAAAAAAAAT
CGGGACATTTTGGATAAGATTTCTTGATTGTTACCCCGCAGATCCTCCGG
CGGATTGTCCCGAAGATTGCCTTGAAGGTTTCAAGAATATGTGGCGAGAA
AGAAGTTGTCCTGAAGGGACACCTTTGGCGTTAGAGGAAGAGTTGGCACG
ACTTCGGGAGGAATATCGGGAGGCTATCATATGCAACAGTACCGCAGTAT
GGACTTTTCTAAGCATAAGCGTTGATTAGAAATTCGACCGACGTCTGACC
AGAGTCATCCTATGGTGGTAGGGGGTATTTGAGCTTCTTTGTTTAATGAA
GGAGTAGCTTTAAGAAAAATACGTTTTGTTTTTTTTGCATTTGTTTACCC
TCCTTCAACAGAAACCCCATATCAACTCGTGGACTGTGTACCTTCAGGGG
TGCACAACCACATGCAGTTGGCATGGCTTTGAATCGCGTTATTTTTTCCA
CCGCTTTTGCGAAGCGGCCTGCGCTAAACAATTGCCCTAACCCCTATACT
GTAGGATAACTTACCAGAAGTATAAAAATATTACGCATTACCCTGCAAGT
GTTGTGCACACCACCGTTTGGTTACAGGCTACGAAGTGCAACCATTGTCT
GTTTTTCCTCGCCAGTTTTCGTGCATCTTTATGAGAACATGCTTTGAGTT
CGTTTTATCTTTAAAAGATATCACGGTTACACCACGTAGTTCACGTACTT
CATGACTTCGTAAGAACATAGTGATTGCATAGCTAACCTGTAGGGGGCTA
TAGGTTGCGTTATTTTTCTGTTTTTTGTCTTTTTATCGTTTGACCGTCTG
AGGGTTTTTCTACGCTGGCTCCGGATAGCCTGTCGAAGAAAAGCTGTCCT
TTTTGGGTTTTTTTTACCCTCGGAAGGCTAAGGCAAAAACCTCTATCCGA
TGCTTCCATACTTAAGTACGTCTACATTTCCTTTAACAGAGCAGAGTTAT
TCATTCCTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCGAACCAAGTAGG
CAGTGTGGGGGTTGCACCCATGAAAAGACCTCTGACTAGGCTTCCAGTTA
TGCTCCGTTCACGAGCTACCCTACCTACCCGTTCGGGCGTAGGTCCGTGG
AAACGTTGTCCATATACCGTTGTGTACAGCATATAGCACGGGTGGAATTC
GCCGTCAGAGTCAATTTTCTTGAGAACGACGGGGCTAGTATCATGAATCC
GAACGACGTGTCGTTGGAAAGATACAGTCGACGCCTGCCATCAGATAGGC
ATGTGCCGTCGGCCGCACGTGGTATTTCTTCTCCAGAGAATCGATTCGAA
AATCAAATACATAACTTGGAGTATTAGAGATCTGTACACTGTACTATAAT
CTATGGTTTTCTTTCAGAAATCGGCACACACCGACAATATTCGAGCAAGT
ATATCACCAATAGTTGAGCCCCAAACAAAAGGAATTGGATAAAAATCTAT
ATAAATTATGATGAATACCGAAAATATTTGCAGGTTAACTGGGAATTCTG
CCTTTTTTTAGGCGATAACTGAACGACGTTTGTTTGCATTTTCATAGGGC
TGTGTACCGGTACTGATGCAGAAACGACATATCGTATATTGGTCCGTTAG
ATATCTGTCGATCAATCGTCATCTTTTGGTTCACGAGTGAGCCCCCCTTC
CCAATCGTAGGACGATTATTCGAAGGGTTGAGAAAGAAGCAAGAATTGGT
CATGGCTAGTCACAGGTTTCGCGGTAGTAGGCTGCCCGGGGTAACTGATC
GTGTGGCTCGGTCTTTCTTGCGGCCAGACTGCTTCTGAAGGAACCCACCG
TACCTACGGGTTGCAGTCTTGTCTTATTTCCTATCCGTCGGCGATGCAAC
CTGGGAATGAGGAAAAGGCTAGCTTTATTTGCGTGTATGTATGTGTGTGT
ATATATATATATATTGCACATATTATTGATGATGGCATAAAACACCAGTA
AAAGAGATTTGAGCAGGTAAAAGAAATAGAGATTTGAGCAAGTGCACTGA
AAACCGAACACCGTGAGAGCGCAGCGGGTATTGCGCGCGGGTTATGATTT
TTGCACATCATTATGCGAGAATGAAGCATGGATTACACCGGCGTAGACGT
GGCTGTACTCCACTTTACTATTTCGAGTATATAGGGTAGCCTCTTCTGTA
GTACTCTATAGGTGGCGGGTCCAAAGCTTCCACCCCCTGGACGAAAAACC
AAAAACAATAATTGGGGTATTCGCGATGAAAGATAAAGAGTAATCGCCTG
AGTTTCAGTATGAGCGAACACATAGAATAAAGTAGCCGACCCTGTTCATT
CGATTTACAAGTATTGATAGCAGTCGTGGATGGTCCAGGGCACCTAGAAT
GGACGAGCTTAATCTCAAACTCAGGCGAATAATTTTTCAATTTTCGTGGC
GAATACGCCAATTTTTCGTATTTGTCCGGGGGGTGAGATCTTCATACTAG
CTTCATTACGATAATGTACGGATTCAGACACAGCTTCGTGCAAGCGGGGA
ATATCCGAGTCATTGTTCAAACAGTAACTCTTTTGACTACAAAGCGTACA
AAAGCGAAACAGTTATAGAGGGTCAGAATAACAAAAAACAAAAAAGGCTG
TGAGTGATTGACGTTTGTCTCGCTTCTTGTTCATGTCCAACACAAGGCGG
TCGTCATGGAAATGGGCCTCGAATATCGCTGCTGATCCAGTACAAAAAAA
TTCGAGCTAAGTACAAGGGGGAACGACGACTCGGCAATAACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1867:1761..7053+

>mRNA_H-paniculata_contig1867.4617.1 ID=mRNA_H-paniculata_contig1867.4617.1|Name=mRNA_H-paniculata_contig1867.4617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig1867:1761..7053+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGATACCGGGGGCGTTTCCGAAACGCATTCGAGAGGGTATCCCCACATG
TTCGGGAAATTGGGCCCGAGTTTGGCTGCTGCACGCGCGGGGAGTGATAC
GATTTTGCCTGTGGACAGTGGAATTGCTGTCGACGACAGACGATACCGGG
GGCGTTTCCGAAACGCATTCGAGAGGGTATCCCCACATGTTCGGGAAATT
GGGCCCGAGTTTGGCTGCTGCACGCGCGGGGAGTGATACGATTTTGCCTG
TGGACAGTGGAATTGCTGTCGACGACAGGCGGTCGTCATGGAAATGGGCC
TCGAATATCGCTGCTGATCCAGTACAAAAAAATTCGAGCTAAGTACAAGG
GGGAACGACGACTCGGCAATAACGCGGTCGTCATGGAAATGGGCCTCGAA
TATCGCTGCTGATCCAGTACAAAAAAATTCGAGCTAAGTACAAGGGGGAA
CGACGACTCGGCAATAAC
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