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Homology
BLAST of mRNA_H-paniculata_contig1865.4614.1 vs. uniprot
Match: A0A6H5L6H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H0_9PHAE) HSP 1 Score: 127 bits (320), Expect = 5.580e-31 Identity = 78/151 (51.66%), Postives = 114/151 (75.50%), Query Frame = 2
Query: 209 IQRVKQSKENKRKRGEITAKANQVAASVRRNAAKRVEEAKAGQSRVASDRRSTVDSLRSVLLQETSTAARSIAEQKAALQKAVDILNERYDDAKEVQRKARLLEDGMRQALEVVRCHVERQLDSKIAETEETVQDIYDQPDSVLSLISGVG 661
+QRVKQSKEN+R++GEI+AKA VAA VRRNA+KRV+EA+AGQ+++A++ RST+ SL + L +E A+ + EQ+ A+++AV+ L+E+Y++A +VQ + +LL D MRQ +VVR H+ Q+ SK+ +TEE V I+ QPD LSLI G
Sbjct: 1 MQRVKQSKENRRQKGEISAKAKAVAAGVRRNASKRVDEARAGQNKLATELRSTLGSLHAALEEEDHLASVLMEEQENAMKEAVNSLSEKYEEAAKVQARVKLLGDCMRQHFQVVRSHIVDQVGSKLTDTEEIVHAIHIQPDKTLSLIRRAG 151
BLAST of mRNA_H-paniculata_contig1865.4614.1 vs. uniprot
Match: D8LNP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP6_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 2.430e-15 Identity = 52/114 (45.61%), Postives = 81/114 (71.05%), Query Frame = 2
Query: 263 AKANQVAASVRRNAAKRVEEAKAGQSRVASDRRSTVDSLRSVLLQETSTAARSIAEQKAALQKAVDILNERYDDAKEVQRKARLLEDGMRQALEVVRCHVERQLDSKIAETEET 604
+KA VAA VRRNA+KRV+E + GQ+++A++ RST+ SL + L +E A+ + EQ+ +++AVD L+E+Y++A +VQ + +LL D MRQ +VVR H+ Q+ SK+ ET T
Sbjct: 10 SKAKAVAAGVRRNASKRVDEVRTGQNKLATELRSTLGSLHAALEEEDHLASALMEEQERTMKEAVDSLSEKYEEAAKVQAQVKLLGDCMRQHFQVVRSHIVDQVGSKLTETVST 123
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-08_006340.1 |
| Exons | 6 |
| Model size | 1703 |
| Cds size | 669 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1865.4614.1 >prot_H-paniculata_contig1865.4614.1 ID=prot_H-paniculata_contig1865.4614.1|Name=mRNA_H-paniculata_contig1865.4614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
MPLLPTLQSKGGNGSAGGTSSNLGVLPFALPELELGSMTKRVGKRKAMLA LEDDGDPKEEAQMIQLWQQIQRVKQSKENKRKRGEITAKANQVAASVRRN AAKRVEEAKAGQSRVASDRRSTVDSLRSVLLQETSTAARSIAEQKAALQK AVDILNERYDDAKEVQRKARLLEDGMRQALEVVRCHVERQLDSKIAETEE TVQDIYDQPDSVLSLISGVGLS* back to topmRNA from alignment at H-paniculata_contig1865:1217..6531+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1865.4614.1 ID=mRNA_H-paniculata_contig1865.4614.1|Name=mRNA_H-paniculata_contig1865.4614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5315bp|location=Sequence derived from alignment at H-paniculata_contig1865:1217..6531+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GATGCCGTTACTCCCAACGCTACAGTCAAAAGGCGGGAACGGTAGCGCTG
GTGGTACGTCGTCGAATCTTGGAGTTCTGCCGTTCGCCCTTCCAGAGTTG
GAGCTGGGCAGTATGACCAAGAGGGTTGGGAAGAGAAAGGCTATGCTTGC
ACTAGAAGATGACGGTGATCCGAAGGAAGAGGCACAGGTCAGTGACACGC
TGGGTTGTGTACGCAGCAAGTACGGGCCATTTGGCAGTCAGAGGTACTGT
ATGTACGTGAAGACAGAGGGCAAGTTACTTGACTTGTTGGCCATTACGGC
ACGATGGTGGGATCGCCATTTTGCGAAGGGAGCACTCGTTTATTATGCAG
GGGCGTCGGTCGCAAAGACGCGGCGTGGACAATAACGTCTGTGCGTGAAG
TTGTGAATGAGCCGCAGAGTGTTCAGTCAGGCATGGCAGTATTATTGCCG
TATGCTGTCTTATCATAGCAGGGTTATAGGCAAGAAAGCGCTTGCCAGTC
TCATTTGCAGCCGTGTTGGAATTGTTAATATTATATACTTGTTATTTATA
GTCCCTGTGCTGTTGTACGATATTGGAACCACAAAGTACAGATGATTCAG
CTTTGGCAGCAAATCCAGAGGGTGAAGCAGAGCAAGGAGAACAAGCGCAA
GAGAGGCGAAATCACAGGTATCACATACACATTTGGTTCTATAAAAGACT
TTACAAACTCGTAAAAGCGGCGCTGTTTCTCTGACTTTTCTTTTTGCACC
CAGTTTATTGTCATGAATCCTCCTCCCATCCCCTCAACCACGTTTGAGGA
TTTGGCAGATAGTTAGAAATTTGCGACCGCACGGGTGTAAGCTACTTTTT
CTCTTATTATTTTAAAATACAGAAAACCTGAGGCGAGGTTCCGCGCTCAC
CCGTGCCCAGGGTTTCTGGCCGCCATGTTCTTCCTGTGTGAAAACTGAAC
AGTGTGTTTGCTGTGGGGTGGGAAGTGTCAACCTGCACGCAGGTTTTCTG
CCTGAAAACTAGATGTGTGTCTAATGTGAGCTGTGAGCTGTGTGCACCTT
TTTTTGTCAGCGTACACGTTGCGTACACTGAACTGTGACAAAAAGCAAGA
GTTCATAGAGCTGGAACACACAGTAAGGATCCGGCATAAGCATGCTGTCT
GTCACCCTATCGAAGTACCACTGCACCGGTTGACAGACACCCTGTAAAAC
AGGTGTAACCATGATGTAACGAACAGTAGCCACCGGAAACAGAACCTCTA
GGCACAAACACACAATAGTACCGTACCGTACCTAAAGCTGTAACGAACAC
AGCAGTAGCAGCTGGGCACAGATACGTATAACAAAATACAGCTGTAACGA
ACGATGTCATGCATATAAATACAAACGACCATTTGTATGTGTCCTGTCCT
GCGTGTGTGTGTACGCCTTTCCCTATGAGTACCAGGCACAGATGCACAAA
AGTATACACTGTGCATTGCAGCACCACTGCATCGGTTCATGAGGATTACA
ACATAAAAGCACTGTACTGCACCCCTATCTTTTCTACCCTCTTGCGTCAC
CCTTAATATCTTTCTTGGCCATCGGCCCATGCCCGGAAGTTATACTTGAA
AACTGTGTACTCTTTGTTGGCAGTGGCGATGATGGAAAGTGTTGTAATAC
AAGTGTTGAAATGATGAACGGGCGTCGTCCGGCAATTCAAGAAGCTAGAT
TCTTGATGTTGGAGACTTGTTCATAAAGCACATGAAGACTCGTTGCATAA
TACTGTTGTGCTCAGGACTCTACTACACTAGCAGACGTTTCTTTGAGTTA
CCTGTTGAACTCACATGACTCATTCACGATGCCGGCAGGTATCAACGCAA
ACGTTCGTATCTTGTGCACAGTGAAATTGCCTTAGAAGGCCTGTACAGTC
CTTCTCGGTTCTTATTTTCATCTGCTCTACTTCGGAGTTGATGATTTCTC
AGCCTCTGCCCTGCCGTATTTTGTTCTTGCGTGGAAATCAATCAGCCAAG
GCGAATCAAGTGGCTGCTAGTGTACGGAGAAATGCCGCCAAGCGAGTTGA
AGAAGCCAAAGCCGGTCAGAGTAGGGTTGCTTCTGACCGCAGGTGGGATT
TTTCTAGCGAGGGTCCCACCATCCATTACACTGGACAATACACTGCCGAT
TATTTTTGAAGTTGGCATTAGAGAACTTTCTTTCTTCACTGGCCTGAGAT
TTGTTGTCTAGTATGCGTTCTGTCATCACTCCACAACAGTCAAACCCCAC
ACATATCCAACGGTCAGCCATAAGGAAGAAAAATATTAAAAACCGCGCGC
ATCCCACGTCACGCACCAAGTCCGTCACGGAGATTACGAAGTGAGTATCC
TCCGTCATGTAGCCATGGTATCTTCGCGAGAACAATCCTCGATCTTGTCA
GTCTTGAAAATGAGCCTGTATAGTAAGTTTATTTGCAACAGGGGTTATTA
AAGCATACTGGATTAACCGAGCTTTGTATGCTTATTTTTGCAACGATCAG
GCGTGCAAACAAGCGCTTGTGGCAGATCTCATAGATAAAAACTCTGCGCG
AAGATCGTTATCGAGAGGAATATGAACTATCAGTACTAGTACTGTGTGTA
TGTAGTGCTCTGACCAAGTGTTGTCCGATGAATTGAACTAACGTATATAC
CAGAAGCACCGTGGATTCTCTACGGTCGGTGCTGCTACAAGAAACTTCTA
CCGCCGCGAGGTCGATAGCAGAACAAAAAGCAGCCCTCCAGAAAGCCGTC
GATATCCTCAACGAGGTGACATTGCCTTGTCTTCTTCAAATACACTAGGA
GTAACATGGTGTTGATTGGGGTATCTCTCTTTCAACCAGTAAACACTACG
TTTGTTTGTAATGGTGTATGGTACGTTCACATCGCATGGATGCTTTACAA
GACCAGTGTACGTGAACTTTCTCTCCCGCTATCTCCCAGCAAACGCTCCT
CGTTATTCCTGTGGCACCGGAAGCACCGTGGTCGAGCAGCGATTGACTCC
CAGGTAGTGCGAGTTTGCGATTAGCTTCGCTTTCGGACGATGTCGCCAAC
GAACGATAGGATGGAAAGAGGACTGTACTAGCAGTTTTGTAAACCGTTGA
TCCTCCTACAGATCTGTCCGCTAGCAAGGACGAAAATGATTCCCCCGTCT
CAGAGCTGCCTTTCGTGATCCTATACCCTACTGTGCGACAACACAGATAT
CATAGCACTCTGAAGATTCCACGCACGGGGTACACTGTTGTCATTTCATA
TAACGCATCTGTGCAAATACAGATAGCACTCTCCCTTGGTGTTGTGAAAT
CATGGCGTCTCTCAGAGGTACGATGACGCGAAGGAAGTGCAGAGAAAGGC
AAGGCTCCTGGAAGACGGCATGCGGCAGGCCTTAGAAGTTGTGCGCTGTC
ATGTGGAAAGACAACTTGACAGCAAGATCGCCGAAACAGGTGAGAATGTG
TGCGCTACTCTTGCTTGCTGTGTTTTTTACCATGCCATGCTATTCTGATG
CGACGACTAATGCAGTGTGTCTTCCATACAGAGCTTTGAGGTTTCCTATG
ACAATGCAAATACAGGGTCGACCTGTGCAATGATTGGCAGAGGGTGCTCG
AAAAATCGCTCGCTCTCCACGACTGCGTTTCCATGTCTAGTGTTGAGCAA
CAAACAAATTAATTCCAAGATAGCATGATTAGCGTGTATATAAACAACGA
ATGACAGTACCCACTCCCACATTTACAGGGACCTAGCGAGAGAACCTGAC
CCTTCGGTTGTCCTTCTTGTGTCTCAATCAAATTCAGAACCACTGGAAAC
AGGAATCGTTCTTCCTGTTATCCGATTCAGCTCGTTCTGTTCCTCTTGCT
TGCAGAGCTGTTGAAGCTACGCTATTGTAGTACAATTATACCGTGTATGG
CATTCAGGCAGGGCTCTGAGGAGCTTGTACGTGTGCTGTTGATGTTGTGA
TGCCAGCACCGAGCAACCGTAACCTTGGACCTCGGTCGTATTATTCGGTT
CTAAGGAACCACGATATGAAATAGAGTACGGTCAAGCGGCAATGGAGTGT
ACGTTGGTATATCTTCTGACATGCGAAGTTCGCTAGTTGCGTGGAAACGT
AGTTCTGGGCATGATGAAGTTTGATACACTGTGATCTACTTCACGCGGTT
GTTTTGCCTAGCCCGACTCTTGAGCAGAGCCTCGCCGTGTACAACATTCA
CGATTCAGAGGAAACGGTTCAAGACATCTACGATCAGCCAGACAGCGTGC
TCAGCCTCATCAGTGGTGTTGGGCTATCATGAACACAAGAGCCTTGGGTG
TTCCAACTGATGGACACTACCATCGTGGGTGGCAGAGGCAGCACAGTACC
GTTAGGCCGGCATGGTCTTCGATCTTTGATCTCGAGTAGCAATAATACGC
AGAGCCATTCATGGGTATATATCGCGAGGGGCCAACCAGTTGAACCACCT
GCATAGCGATTCATGATGCGAGGTTGCAGTCGAAGAACACGCAGAGTGGA
GCTGAACCGGAGTCGGGGGATCAGGTTATGACATACAGCATCATCGACAA
CGTACGTACTGTACTTGAATACAACTGGATTTAGCACATATTCAGTAGGT
ATCATAAATCATTTCAGGTCGGGAAGTACCTGCTGTTTGACAAGGCATAG
GTTGCCACATGGATTGGGTCGTCATCGCACGCGAGTCACGGATAGAGATC
GTTTCGAAGAATGAAGATCGATATCGAACCGCTTCAAATTTTCGCTCGCA
GCATTTGTCTGTCTCTATTTCAAAACGGGTACCTATTTTTTGAGAAGCTG
TGGGGCAATTCGACCGTACACGTACTGTACTCTGGTTGGTTTTAAGGCAA
ACTTGGAATTGAAACCGACCCCTCTGGTCTGAATTATCGCTCGGTACCGC
ACCGTGATGGGCCAATGTGTGGCCGCCGAACGACCGTTCTGTTCCGTGTT
GGGCAAACCGATGTTCGCAGCAGTCCTTATGGAGTGGAGAGCGAATCCAC
TATTTACATACTTCTGCAAAAGATTTGAGCATGGCGCGGTATGTTGTACC
TCAAACACGGTCGTGGTTTGTACCAATGTTAAAGATCAAAATTACTTTCA
GCCAAAAAACATTTCGAGCGGTCGTATTTGCGGTGTCTCGAAAGCGTCGT
AATGTAGTGGTTTGGTTTGGTTTGGTTTGAGTGTACTGGTGAGCGGTGTA
GTGGAAGCGCCATGCTATCGAAAGTGCGGTAGTTCATCGTCTCTGACGGA
CGAATGTCGAGCATACGAGAATGATTTTCTCCGTTCCCCCCGCTTCCGTT
ATTTCAAGACTTTAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1865:1217..6531+ >mRNA_H-paniculata_contig1865.4614.1 ID=mRNA_H-paniculata_contig1865.4614.1|Name=mRNA_H-paniculata_contig1865.4614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig1865:1217..6531+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCCGTTACTCCCAACGCTACAGTCAAAAGGCGGGAACGGTAGCGCTGG TGGTACGTCGTCGAATCTTGGAGTTCTGCCGTTCGCCCTTCCAGAGTTGG AGCTGGGCAGTATGACCAAGAGGGTTGGGAAGAGAAAGGCTATGCTTGCA CTAGAAGATGACGGTGATCCGAAGGAAGAGGCACAGATGCCGTTACTCCC AACGCTACAGTCAAAAGGCGGGAACGGTAGCGCTGGTGGTACGTCGTCGA ATCTTGGAGTTCTGCCGTTCGCCCTTCCAGAGTTGGAGCTGGGCAGTATG ACCAAGAGGGTTGGGAAGAGAAAGGCTATGCTTGCACTAGAAGATGACGG TGATCCGAAGGAAGAGGCACAGATGATTCAGCTTTGGCAGCAAATCCAGA GGGTGAAGCAGAGCAAGGAGAACAAGCGCAAGAGAGGCGAAATCACAGAT GATTCAGCTTTGGCAGCAAATCCAGAGGGTGAAGCAGAGCAAGGAGAACA AGCGCAAGAGAGGCGAAATCACAGCCAAGGCGAATCAAGTGGCTGCTAGT GTACGGAGAAATGCCGCCAAGCGAGTTGAAGAAGCCAAAGCCGGTCAGAG TAGGGTTGCTTCTGACCGCAGCCAAGGCGAATCAAGTGGCTGCTAGTGTA CGGAGAAATGCCGCCAAGCGAGTTGAAGAAGCCAAAGCCGGTCAGAGTAG GGTTGCTTCTGACCGCAGAAGCACCGTGGATTCTCTACGGTCGGTGCTGC TACAAGAAACTTCTACCGCCGCGAGGTCGATAGCAGAACAAAAAGCAGCC CTCCAGAAAGCCGTCGATATCCTCAACGAGAAGCACCGTGGATTCTCTAC GGTCGGTGCTGCTACAAGAAACTTCTACCGCCGCGAGGTCGATAGCAGAA CAAAAAGCAGCCCTCCAGAAAGCCGTCGATATCCTCAACGAGAGGTACGA TGACGCGAAGGAAGTGCAGAGAAAGGCAAGGCTCCTGGAAGACGGCATGC GGCAGGCCTTAGAAGTTGTGCGCTGTCATGTGGAAAGACAACTTGACAGC AAGATCGCCGAAACAGAGGTACGATGACGCGAAGGAAGTGCAGAGAAAGG CAAGGCTCCTGGAAGACGGCATGCGGCAGGCCTTAGAAGTTGTGCGCTGT CATGTGGAAAGACAACTTGACAGCAAGATCGCCGAAACAGAGGAAACGGT TCAAGACATCTACGATCAGCCAGACAGCGTGCTCAGCCTCATCAGTGGTG TTGGGCTATCATGAAGGAAACGGTTCAAGACATCTACGATCAGCCAGACA GCGTGCTCAGCCTCATCAGTGGTGTTGGGCTATCATGA back to top
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