mRNA_H-paniculata_contig1864.4611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1864.4611.1
Unique NamemRNA_H-paniculata_contig1864.4611.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1864.4611.1 vs. uniprot
Match: D7G7R5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.880e-42
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 3 
Query:    3 MPTVRFRAAAVNVSHHVYLFGGRAANGDLVCTVDRYNAIDRIWETLDVVQENNCYSDHSGVATDDGTIFLFGGYSADYRSHATVVKVEVSGDD-IAFSTSTPMNIDRGDHVCSLVPS 350
            MPT RFRAAAVNVS HVYLFGGR A G+L C VDRY+ +   W  LDV Q  +C+SDHSGVA+DDGTI+LFGGY  DY +  TVVKVEVS DD + FST+  M I RGDH C  +P+
Sbjct:   77 MPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATDCFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVEVSSDDTMTFSTTEAMTIKRGDHSCIRLPA 193
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BLAST of mRNA_H-paniculata_contig1864.4611.1 vs. uniprot
Match: B8C4U8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4U8_THAPS)

HSP 1 Score: 54.3 bits (129), Expect = 3.850e-6
Identity = 37/109 (33.94%), Postives = 53/109 (48.62%), Query Frame = 3 
Query:    3 MPTVRFRAAAVNVSHHVYLFGGRAANGDLVCTVDRYNAIDRIWETLDVVQENNCYSDHSGVATDDGTIFLFGGYSADYRSHATVVKVEVSG-DDIAFSTSTPMNIDRGD 326
            MP  R R  +V V   V L GGR     LV  +D Y+     W +   + E    SD +  A D  T++L GG+ ADY +   VV +++S  DD+ +S    +   RGD
Sbjct:  124 MPRKRARHVSVVVGGMVCLLGGRDETDGLVAEIDCYDPSTNTWSSPASLPEEYRNSDAAAFA-DGNTVYLIGGWDADYTALDRVVLIDMSNMDDVQYSDGPTLLDARGD 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1864.4611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7R5_ECTSI1.880e-4264.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B8C4U8_THAPS3.850e-633.94Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1864contigH-paniculata_contig1864:21577..23642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue5.3e-35
Seed eggNOG ortholog2880.D7G7R5
KEGG koko:K10442,ko:K10443,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG4441@1,KOG4441@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons3
Model size350
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1864.4611.1prot_H-paniculata_contig1864.4611.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1864 21577..23640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.4260452-CDS-H-paniculata_contig1864:21576..216121622929439.4260452-CDS-H-paniculata_contig1864:21576..21612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 21577..21612 -
1691480862.0128655-CDS-H-paniculata_contig1864:21576..216121691480862.0128655-CDS-H-paniculata_contig1864:21576..21612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 21577..21612 -
1622929439.4414012-CDS-H-paniculata_contig1864:22519..227441622929439.4414012-CDS-H-paniculata_contig1864:22519..22744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 22520..22744 -
1691480862.0266109-CDS-H-paniculata_contig1864:22519..227441691480862.0266109-CDS-H-paniculata_contig1864:22519..22744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 22520..22744 -
1622929439.4682176-CDS-H-paniculata_contig1864:23553..236401622929439.4682176-CDS-H-paniculata_contig1864:23553..23640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 23554..23640 -
1691480862.0356293-CDS-H-paniculata_contig1864:23553..236401691480862.0356293-CDS-H-paniculata_contig1864:23553..23640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 23554..23640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.4840689-UTR-H-paniculata_contig1864:23640..236421622929439.4840689-UTR-H-paniculata_contig1864:23640..23642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1864 23641..23642 -
1691480862.0449147-UTR-H-paniculata_contig1864:23640..236421691480862.0449147-UTR-H-paniculata_contig1864:23640..23642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1864 23641..23642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1864.4611.1

>prot_H-paniculata_contig1864.4611.1 ID=prot_H-paniculata_contig1864.4611.1|Name=mRNA_H-paniculata_contig1864.4611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MPTVRFRAAAVNVSHHVYLFGGRAANGDLVCTVDRYNAIDRIWETLDVVQ
ENNCYSDHSGVATDDGTIFLFGGYSADYRSHATVVKVEVSGDDIAFSTST
PMNIDRGDHVCSLVPS
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mRNA from alignment at H-paniculata_contig1864:21577..23642-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1864.4611.1 ID=mRNA_H-paniculata_contig1864.4611.1|Name=mRNA_H-paniculata_contig1864.4611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2066bp|location=Sequence derived from alignment at H-paniculata_contig1864:21577..23642- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGCCAACAGTCCGTTTCCGTGCTGCAGCGGTCAATGTGTCTCACCAC
GTGTACCTATTCGGTGGGCGAGCTGCCAACGGAGATCTTGTGAGTGGAAC
GCGTATGACGTCTAATCAAGTTGGTATCTACACGGCCGTGTATTAGCTCT
GAGGAAGGCAAAAAATCGAGAAGGCAAAGTTCAATTTTTGCTTGGTGTAT
GTCTATGATTGACCGGTGCGCCTAGGACTAACCCAAGAAATTCGAAATCA
TATTTGTACATTTATATGTTATCTTTGTATTCAAAGTATTGTGCAGACTC
ACATGCGGCGTTCCAAAGCAAGAGCGAGAATCGAATTTAAAATGCAAACG
AAAAGAGGCACAACAGCCTAATACTTCGAAGCAGATATGAAACTGCAATT
TTGATCCTTAGTGGACATTTGTCTGGTTGAATAAATGAGATGGTACCTTG
GTGGGGGCATTTATCTTGATGAATAGGACTGCAAATGCTCATTTCCAAGG
GAATTTCTTGCAGTCTATTCAAATTCACCCAAAACGAATACAACAGGCCT
CGTACCGTTACGAATCCTGTATTCCATTCGTATTCGTCGGAGAACTGGAA
ATTCTGAAATTACCATCTGGAGGTGACTGGCTTACACGAGAGAAGTTAGA
ATATTGTGAACATAAGAGAGAGTAATCCTCACGGTCAGCCGCTGGCAACC
AGATTCCCCCAGCAGCATCTCTCGGCCGATCAGACCCCAATCTCACGATG
GGGTTAGCTAGTCCGTCCTCAGGATTGACTAGACAAGCAGACTGTCTGTT
ACAAAGCGACTGGCCTCGAGTATTTGTACCATGAGTGCACTCGTCCCCTC
TCTATTTCCCGATCTCCCGCGCCCCTCAATGGTTCCCTGCTAATTAAGGT
TTGCACCGTGGATCGATACAACGCCATCGATAGAATATGGGAAACCCTTG
ACGTGGTGCAGGAAAACAACTGCTATTCGGACCACTCAGGTGTGGCTACA
GATGACGGGACGATTTTTCTGTTTGGGGGCTACAGCGCAGACTACAGAAG
CCACGCCACCGTGGTGAAAGTGGAGGTGTCAGGGGACGATATAGCATTCT
CCACTTCCACTCCAATGAATATCGTGAGTTCGTTAGTCAGTTACCCCAGG
TAATTGCGACCTTCTTAAACGAGACAGTCCGTACGTCGGCCATAACTCTC
ATCGGACGTTGTGATTATCTTTTTGTTGCTGTTAACCTGTTTTTCGTCAC
CCAACCATCTCGATCGTTTTTGTCCGTGTCACCGCGGACACCCTCCCCTC
CCATAGCATTTACAAGTTCATAGTGAAGGGGTGTGTTGTCCTCTACCGGC
GTTTGTGGGAATTATCCCCTATGTGGGATATGTTCCATACCACCCTCGTC
ACTATGAGTCTTGTTGCTCTTTTTGCACGAGGCTCTAGTGTAACAGGCCG
TAGGGTAACCAGTTTCGACCGGCTGGGGGTTAGGATGGCTCTCTTTCTCT
TCATGTATCTCTGGCGTGTGTGTTGAGTACCCAGGCCAAATTACTCAAAA
GACTAAATATTACGGTTCGTTACCCTTTGCTGCTTTCCTGACTGAATAAG
CGACTTTTTTGGTTCTTCCAGTTTTTGCTGATGATCGGTCGAGGATTTAA
ACCTACGACCTTCTCGACCAAAGGCGGATCGACGTTGAATTGGTGTTGTC
ATAGAAGGGGGGAGATTGTCCTCGATAGACACCATGAGAAATATCCCATT
TTATGTTATACGTTATTTTCCAGATATATCAACTTCGCGCTTCCTTGATT
TTTTGTGGGAGCTTCTGTATCAATAGGAGAATACCACATTAAGCGGCTCG
TTGATTCCTCCACGTGTGTTTTTGTATAAAGAATGACCGGATTCTGCAGC
TTCTTGACCCTCGTTCTGTTGTTTGTCGAGGCGTGTGCTTTGACGTCGGG
AAACGTCCACTGCGAATTCCTTACACTGAATATATATATACGCCCCCGAC
CGTTTACCCCGTTAAACTCGATGATGATAGGATCGAGGAGACCATGTGTG
TTCTCTAGTGCCTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1864:21577..23642-

>mRNA_H-paniculata_contig1864.4611.1 ID=mRNA_H-paniculata_contig1864.4611.1|Name=mRNA_H-paniculata_contig1864.4611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig1864:21577..23642- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACAGTCCGTTTCCGTGCTGCAGCGGTCAATGTGTCTCACCACGT
GTACCTATTCGGTGGGCGAGCTGCCAACGGAGATCTTATGCCAACAGTCC
GTTTCCGTGCTGCAGCGGTCAATGTGTCTCACCACGTGTACCTATTCGGT
GGGCGAGCTGCCAACGGAGATCTTGTTTGCACCGTGGATCGATACAACGC
CATCGATAGAATATGGGAAACCCTTGACGTGGTGCAGGAAAACAACTGCT
ATTCGGACCACTCAGGTGTGGCTACAGATGACGGGACGATTTTTCTGTTT
GGGGGCTACAGCGCAGACTACAGAAGCCACGCCACCGTGGTGAAAGTGGA
GGTGTCAGGGGACGATATAGCATTCTCCACTTCCACTCCAATGAATATCG
TTTGCACCGTGGATCGATACAACGCCATCGATAGAATATGGGAAACCCTT
GACGTGGTGCAGGAAAACAACTGCTATTCGGACCACTCAGGTGTGGCTAC
AGATGACGGGACGATTTTTCTGTTTGGGGGCTACAGCGCAGACTACAGAA
GCCACGCCACCGTGGTGAAAGTGGAGGTGTCAGGGGACGATATAGCATTC
TCCACTTCCACTCCAATGAATATCGATCGAGGAGACCATGTGTGTTCTCT
AGTGCCTTCCGATCGAGGAGACCATGTGTGTTCTCTAGTGCCTTCC
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