mRNA_H-paniculata_contig1864.4610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1864.4610.1
Unique NamemRNA_H-paniculata_contig1864.4610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1864.4610.1 vs. uniprot
Match: D7G7R5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.040e-34
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:    6 LHGRITVVGGE-DEKGPMDDVEWYNPEDDCWTDSGDIFDLPYKRLRYCAATHQSDQRIYIFGGQSLPSPEDGTYTISETVNWYK 254
            ++GRITVVGGE DE+ PMDDVEWY+P  DCWTDSG++FDLPYKRLRYCAAT ++D RI+IFGGQ++   +   Y+I +TVNWY+
Sbjct:  244 VNGRITVVGGENDERQPMDDVEWYDPSTDCWTDSGELFDLPYKRLRYCAATVETDGRIFIFGGQAVDETDSEVYSIEDTVNWYQ 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1864.4610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7R5_ECTSI1.040e-3466.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1864contigH-paniculata_contig1864:19059..19545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1864.4610.1prot_H-paniculata_contig1864.4610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1864 19059..19536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.162538-CDS-H-paniculata_contig1864:19058..192481622929439.162538-CDS-H-paniculata_contig1864:19058..19248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 19059..19248 -
1691480861.8823133-CDS-H-paniculata_contig1864:19058..192481691480861.8823133-CDS-H-paniculata_contig1864:19058..19248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 19059..19248 -
1622929439.1747658-CDS-H-paniculata_contig1864:19477..195361622929439.1747658-CDS-H-paniculata_contig1864:19477..19536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 19478..19536 -
1691480861.890294-CDS-H-paniculata_contig1864:19477..195361691480861.890294-CDS-H-paniculata_contig1864:19477..19536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1864 19478..19536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.1934206-UTR-H-paniculata_contig1864:19536..195451622929439.1934206-UTR-H-paniculata_contig1864:19536..19545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1864 19537..19545 -
1691480861.8980377-UTR-H-paniculata_contig1864:19536..195451691480861.8980377-UTR-H-paniculata_contig1864:19536..19545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1864 19537..19545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1864.4610.1

>prot_H-paniculata_contig1864.4610.1 ID=prot_H-paniculata_contig1864.4610.1|Name=mRNA_H-paniculata_contig1864.4610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MDASPLSEARTRRDPWMMLSGITPRTTAGLIPETSSTSPTSVCATALPRI
SRTNASTSLEASPCRAPKTEPTRSVRPSTGTR*
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mRNA from alignment at H-paniculata_contig1864:19059..19545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1864.4610.1 ID=mRNA_H-paniculata_contig1864.4610.1|Name=mRNA_H-paniculata_contig1864.4610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=487bp|location=Sequence derived from alignment at H-paniculata_contig1864:19059..19545- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCACCTTCATGGACGCATCACCGTTGTCGGAGGCGAGGACGAGAAGGGA
CCCATGGATGATGTTGAGGTATGGGAGATAGATCTACGTGCTAACCATGC
ACCAATCTGCCCTACGGCAAAACCACGACAGACGAGACCTTGTCGATTTG
TATTGAGTAGGAACAACTCCAAGATTCATATTTCTAAAATATTGTATTAT
TATCCGACCTTTGTTTTGTTTCCTTGCTTTGTTCACCTTCAATTTTTCTA
TATTTAGAACCAATAGTTTTACTGTCTTTTCTCCTCGTGCCATGCAGTGG
TATAACCCCGAGGACGACTGCTGGACTGATTCCGGAGACATCTTCGACCT
CCCCTACAAGCGTCTGCGCTACTGCGCTGCCACGCATCAGTCGGACCAAC
GCATCTACATCTTTGGAGGCCAGTCCCTGCCGAGCCCCGAAGACGGAACC
TACACGATCAGTGAGACCGTCAACTGGTACAAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1864:19059..19545-

>mRNA_H-paniculata_contig1864.4610.1 ID=mRNA_H-paniculata_contig1864.4610.1|Name=mRNA_H-paniculata_contig1864.4610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig1864:19059..19545- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCATCACCGTTGTCGGAGGCGAGGACGAGAAGGGACCCATGGAT
GATGTTGAGATGGACGCATCACCGTTGTCGGAGGCGAGGACGAGAAGGGA
CCCATGGATGATGTTGAGTGGTATAACCCCGAGGACGACTGCTGGACTGA
TTCCGGAGACATCTTCGACCTCCCCTACAAGCGTCTGCGCTACTGCGCTG
CCACGCATCAGTCGGACCAACGCATCTACATCTTTGGAGGCCAGTCCCTG
CCGAGCCCCGAAGACGGAACCTACACGATCAGTGAGACCGTCAACTGGTA
CAAGGTGATGGTATAACCCCGAGGACGACTGCTGGACTGATTCCGGAGAC
ATCTTCGACCTCCCCTACAAGCGTCTGCGCTACTGCGCTGCCACGCATCA
GTCGGACCAACGCATCTACATCTTTGGAGGCCAGTCCCTGCCGAGCCCCG
AAGACGGAACCTACACGATCAGTGAGACCGTCAACTGGTACAAGGTGA
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