mRNA_H-paniculata_contig1862.4604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: D7FXY3_ECTSI (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY3_ECTSI) HSP 1 Score: 322 bits (824), Expect = 8.590e-102 Identity = 171/237 (72.15%), Postives = 188/237 (79.32%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXR------------------PFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
A+GPARPTGGCGAVAVLVGP+APLV+N KTRASYACDVWDFFKPDMSSEYP+VNGQLSQ CYLRALDSCY++L+ KK XXXXXXX PFVL DV+HVLCHSPYNKLVQKSFAR+AFSDARRL+ G PL ++ +ETYDDR+LEKALK+FAGV S YR VEPGCRLSKQIGNTYTASVFANIVCLV A G++LEGETALVFSYGSG
Sbjct: 166 AEGPARPTGGCGAVAVLVGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAXXXXXXXXXXXXXXXXXXEGGGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSGAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSG 402
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A836C9U2_9STRA (Hydroxymethylglutaryl-coenzyme A synthase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9U2_9STRA) HSP 1 Score: 247 bits (630), Expect = 2.420e-72 Identity = 128/221 (57.92%), Postives = 155/221 (70.14%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXR--PFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
A+GPARPTGGCGAVAVL+GP+APL VN R ++ACDVWDFFKPDMSSEYP+V+G LSQ CYLRA+D CY + + KK + P+ E H L HSPYNKLVQKS+ARL F+DARR AG PL L +P + ++TY+D +L ALK GV + Y+ V PGC LS++IGNTYTASVFANI CLVD G++L+G VFSYGSG
Sbjct: 168 AEGPARPTGGCGAVAVLIGPDAPLAVNACARTTHACDVWDFFKPDMSSEYPRVDGALSQSCYLRAIDDCYSRFADKKERSTDAAAATAAPYTAESADHFLFHSPYNKLVQKSYARLFFTDARRCSAAGRPLPPHL-APLEPWLDAPLEDTYNDVKLAAALK---GVAAAAYKARVAPGCVLSQRIGNTYTASVFANIACLVDREGAALDGARVAVFSYGSG 384
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: M4BVN1_HYAAE (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN1_HYAAE) HSP 1 Score: 197 bits (502), Expect = 2.840e-56 Identity = 107/220 (48.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSL-EGETALVFSYGSG 657
AKGPARP+GGCGAVA+LVGP+AP+V++ KT+A++A +VWDF+KP MSSEYP V+GQLS CYL ALD CY L KK K + V + + HSPY+KLVQKSFARL F D+RRL +G + + ET +DREL+ + V E +R V P C S+Q+GN+YTA+V+ N+ LV L +G L+FSYGSG
Sbjct: 155 AKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTVDGQLSNACYLHALDECY-LLFCKKSKSLAAVDQEEIGVASVDYAVFHSPYHKLVQKSFARLGFLDSRRLMSSGDEAAKEKYASLRKWADAPLHETLNDRELDLVARD---VAREDFRVKVSPSCTTSQQLGNSYTAAVYMNLATLVYVRAKELAQGARVLLFSYGSG 370
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: D0NKN5_PHYIT (Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytophthora TaxID=4783 RepID=D0NKN5_PHYIT) HSP 1 Score: 199 bits (506), Expect = 1.030e-55 Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLE-GETALVFSYGSG 657
AKGPARP+GGCGAVA+L+GP+AP+V++ +T++++A +VWDF+KP++SSEYP V+G+LS CYL ALD CY KK P V V + + HSPYNKLVQKSFARL F D+RRL +P A ET +DREL+ A + GV E ++ V P C S+Q+GN YTA+V+ N+ LV A L G L+FSYGSG
Sbjct: 155 AKGPARPSGGCGAVAMLIGPDAPMVLDCRTKSTHATNVWDFYKPNVSSEYPTVDGKLSNSCYLHALDECYQLFCKKSEAAVKVDGDEPGVAS-VDYAVFHSPYNKLVQKSFARLLFLDSRRLLHTEDEAAKEKFAPLAKWVHTPLDETLNDRELDLAAR---GVAKEDFQTKVSPSCTTSQQLGNCYTAAVYMNLATLVHARAKDLALGSRVLMFSYGSG 370
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A482SR24_9ARCH (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SR24_9ARCH) HSP 1 Score: 193 bits (490), Expect = 3.000e-55 Identity = 101/219 (46.12%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
A GPARPTGGCG+VA+L+G NAP+ ++ +TR A VWDFFKP++ SEYP VNG LSQ CYL++LD CY + +K + ++L HSPYNKLVQKSF RL + D + SP+ L P TY+D++LE ALK + G Y+ V GC +S++IGNTYTASV+ N+ LV G+ L G+ ++FSYGSG
Sbjct: 183 ADGPARPTGGCGSVAMLIGRNAPISIDLRTRTCSASHVWDFFKPNLHSEYPTVNGALSQTCYLQSLDDCYTRFLEKSQRIRQTD----MTASSADYILFHSPYNKLVQKSFGRLLYHDMLSKKVDASPITPWLNKPI--------HTTYEDKDLETALKEVSKAG---YKSKVSLGCEISQRIGNTYTASVYMNLAHLVSNLGNQLIGKKTMLFSYGSG 386
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A4D9DA31_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA31_9STRA) HSP 1 Score: 199 bits (506), Expect = 3.500e-55 Identity = 104/221 (47.06%), Postives = 149/221 (67.42%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARR--LRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
A GPA+PTGGCGAVA+LVGP+APLV++ + RA++A + WDFFKP +SEYP+V+G++S+ CYL+ALD CY + + K+ + +PF + + + H PYNKLVQK+F RL F DARR L+KA S ++ + +ETYDDR+LE L+ G+ + + + V P C +S Q+GNTYTASV+ N+VCL+ +L G+ LV+S+GSG
Sbjct: 279 ADGPAKPTGGCGAVALLVGPDAPLVIDPQLRATHASNTWDFFKPKFASEYPEVDGKMSKDCYLKALDDCYMRFAGKQEEAFG----KPFKADAIDYFCFHHPYNKLVQKAFGRLFFMDARRGKLKKAEG-----WESLDPWISNSL-EETYDDRDLETLLR---GLSHDRFSKRVAPSCLVSMQVGNTYTASVYMNLVCLIAQKAEALVGKRILVYSFGSG 486
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: M4BVN2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN2_HYAAE) HSP 1 Score: 197 bits (502), Expect = 7.610e-55 Identity = 107/220 (48.64%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSL-EGETALVFSYGSG 657
AKGPARP+GGCGAVA+LVGP+AP+V++ KT+A++A +VWDF+KP MSSEYP V+GQLS CYL ALD CY L KK K + V + + HSPY+KLVQKSFARL F D+RRL +G + + ET +DREL+ + V E +R V P C S+Q+GN+YTA+V+ N+ LV L +G L+FSYGSG
Sbjct: 155 AKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTVDGQLSNACYLHALDECY-LLFCKKSKSLAAVDQEEIGVASVDYAVFHSPYHKLVQKSFARLGFLDSRRLMSSGDEAAKEKYASLRKWADAPLHETLNDRELDLVARD---VAREDFRVKVSPSCTTSQQLGNSYTAAVYMNLATLVYVRAKELAQGARVLLFSYGSG 370
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A024TPQ8_9STRA (Hydroxymethylglutaryl-CoA synthase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TPQ8_9STRA) HSP 1 Score: 196 bits (498), Expect = 3.420e-54 Identity = 106/219 (48.40%), Postives = 134/219 (61.19%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
AKGPARPT GCGAVA+L+GPNAPLV+ + R +++ ++WDF+KPD SEYP V+G+ SQ CYL+ LD CY + K + F + +VL HSPYNKL QK FAR+ F+D LR P L E ETY DRELE A + V + RMVEP C S+ IGN YTASV+ N+ CLVD S+L G+ ++FSYGSG
Sbjct: 240 AKGPARPTSGCGAVAMLIGPNAPLVMESELRTTFSENMWDFYKPDPHSEYPTVDGKFSQSCYLKTLDDCYRRFCSKNELAGVTKNGQFFDVAANDYVLFHSPYNKLAQKGFARIVFNDF--LRNPTLPQYEKLKKWHGAALE----ETYYDRELEAASRE---VSLNMWNRMVEPSCFASRHIGNCYTASVYINLACLVDTARSALHGKRLMLFSYGSG 449
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A7J7MZP9_9MAGN (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MZP9_9MAGN) HSP 1 Score: 189 bits (481), Expect = 3.490e-54 Identity = 105/219 (47.95%), Postives = 140/219 (63.93%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
A+GPARPTGG A+A+L+GP+AP+V K RAS+ V+DF+KPD++SEYP V+G+LSQ CYL ALDSCY L K K +PF + D +++ HSPYNKLVQKSFARL F D LR A S + + A + + E+Y R+LEK + V Y V+P L KQ+GN YTAS++A +V L+ ++LEG+ L+FSYGSG
Sbjct: 181 AEGPARPTGGAAAIAMLIGPDAPIVFESKIRASHMSHVYDFYKPDLASEYPVVDGKLSQTCYLTALDSCYKLLCAKFEKLNG----KPFSISDADYIVFHSPYNKLVQKSFARLCFMDF--LRNASS-IDESAKEKLAPFSALTGDESYASRDLEKVSQQ---VAKPLYDLKVQPTTLLPKQVGNMYTASLYAALVSLIHNKTTTLEGKRVLMFSYGSG 389
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Match: A0A251VID0_HELAN (Hydroxymethylglutaryl-CoA synthase n=14 Tax=Asteraceae TaxID=4210 RepID=A0A251VID0_HELAN) HSP 1 Score: 188 bits (478), Expect = 4.270e-54 Identity = 102/219 (46.58%), Postives = 140/219 (63.93%), Query Frame = 1
Query: 1 AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYPQVNGQLSQMCYLRALDSCYDKLSKKKLKXXXXXXXRPFVLEDVQHVLCHSPYNKLVQKSFARLAFSDARRLRKAGSPLCHTLPSPCACVTEIIPQETYDDRELEKALKSFAGVGSEPYRRMVEPGCRLSKQIGNTYTASVFANIVCLVDAHGSSLEGETALVFSYGSG 657
A+GPARPTGG A+A+L+GP+AP+ K RAS+ V+DF+KPD++SEYP V+G+LSQ CYL ALDSCY+ K K + F + D + + HSPYNKLVQKSFARL FSD +R A S + ++ T + E+Y +R+LEKA + A Y + V+PG ++KQ+GN YTAS++A L+ SSL+G ++FSYGSG
Sbjct: 153 AEGPARPTGGAAAIAMLIGPDAPIAFESKFRASHMSHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYNGYCHKYEKLEG----KQFSIVDADYFVFHSPYNKLVQKSFARLVFSDV--VRNASS-VDESVKEKLGQFTPLTGDESYQNRDLEKASQQAA---KSYYDKKVQPGTLINKQVGNMYTASIYAAFASLIHNKYSSLDGNRVMMFSYGSG 361 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1862.4604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1862.4604.1 >prot_H-paniculata_contig1862.4604.1 ID=prot_H-paniculata_contig1862.4604.1|Name=mRNA_H-paniculata_contig1862.4604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp AKGPARPTGGCGAVAVLVGPNAPLVVNQKTRASYACDVWDFFKPDMSSEYback to top mRNA from alignment at H-paniculata_contig1862:263..1700- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1862.4604.1 ID=mRNA_H-paniculata_contig1862.4604.1|Name=mRNA_H-paniculata_contig1862.4604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1438bp|location=Sequence derived from alignment at H-paniculata_contig1862:263..1700- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1862:263..1700- >mRNA_H-paniculata_contig1862.4604.1 ID=mRNA_H-paniculata_contig1862.4604.1|Name=mRNA_H-paniculata_contig1862.4604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig1862:263..1700- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |