mRNA_H-paniculata_contig18616.4602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18616.4602.1
Unique NamemRNA_H-paniculata_contig18616.4602.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18616.4602.1 vs. uniprot
Match: A0A6H5K1V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.430e-15
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:    7 QILVGSLLLDWATLSSIPANPQQCGQCGRFDSDRFPSALLVAWRLPSQNPPRPLSLSRSGTANPAVGAFNPMTTYFTALRRVSSPPRDITNPGNV 291
            + L GSL L W  L ++PA+P++CG      S+R+PSA L   R+     PRPLS+S  G +NPAV  FNPM T+FTA+R++ +  R     G V
Sbjct:  245 RALWGSLTLTWDNLMAVPASPRKCGVFSGLQSERYPSAFLAVRRV-CPPLPRPLSMSPRGVSNPAVEKFNPMVTFFTAIRQLVNGVRGGVGAGGV 338
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BLAST of mRNA_H-paniculata_contig18616.4602.1 vs. uniprot
Match: D7FU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU46_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.120e-14
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    7 QILVGSLLLDWATLSSIPANPQQCGQCGRFDSDRFPSALLVAWRLPSQNPPRPLSLSRSGTANPAVGAFNPMTTYFTALRRVS 255
            + L GSL L W  L ++P  P++CG      S+R+P+A L   R+    P RPLS+S  G +NPAV  FNPM T+FTA+RRV+
Sbjct:  242 RALWGSLTLSWDNLMAVPTGPRKCGVFSGLQSERYPTAFLAVRRVYPPLP-RPLSMSPRGVSNPAVEKFNPMVTFFTAIRRVT 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18616.4602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1V3_9PHAE5.430e-1544.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU46_ECTSI1.120e-1446.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18616contigH-paniculata_contig18616:1466..4831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size413
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18616.4602.1prot_H-paniculata_contig18616.4602.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18616 1466..4831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929438.3123477-CDS-H-paniculata_contig18616:1465..15401622929438.3123477-CDS-H-paniculata_contig18616:1465..1540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18616 1466..1540 +
1691480861.457772-CDS-H-paniculata_contig18616:1465..15401691480861.457772-CDS-H-paniculata_contig18616:1465..1540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18616 1466..1540 +
1622929438.3258357-CDS-H-paniculata_contig18616:2853..30231622929438.3258357-CDS-H-paniculata_contig18616:2853..3023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18616 2854..3023 +
1691480861.468781-CDS-H-paniculata_contig18616:2853..30231691480861.468781-CDS-H-paniculata_contig18616:2853..3023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18616 2854..3023 +
1622929438.338257-CDS-H-paniculata_contig18616:4665..48311622929438.338257-CDS-H-paniculata_contig18616:4665..4831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18616 4666..4831 +
1691480861.4784284-CDS-H-paniculata_contig18616:4665..48311691480861.4784284-CDS-H-paniculata_contig18616:4665..4831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18616 4666..4831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18616.4602.1

>prot_H-paniculata_contig18616.4602.1 ID=prot_H-paniculata_contig18616.4602.1|Name=mRNA_H-paniculata_contig18616.4602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MCQILVGSLLLDWATLSSIPANPQQCGQCGRFDSDRFPSALLVAWRLPSQ
NPPRPLSLSRSGTANPAVGAFNPMTTYFTALRRVSSPPRDITNPGNVLKN
DDDDYTSGSNNNSKNGLILRGWDGGGSGEVVGGRVAG
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mRNA from alignment at H-paniculata_contig18616:1466..4831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18616.4602.1 ID=mRNA_H-paniculata_contig18616.4602.1|Name=mRNA_H-paniculata_contig18616.4602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3366bp|location=Sequence derived from alignment at H-paniculata_contig18616:1466..4831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCAGATTCTTGTGGGGTCGCTGCTGTTAGACTGGGCGACACTATC
GTCCATTCCGGCGAATCCTCAACAGGTGAGCTTGTTGCCGTCGTCATAAT
CCAATGTTACTGATTTTGTCACCGTTGGCTGTGGTGGGTGGGTGGAAGGG
GTGCGGGGGGGGGGGGGAGGGTGGTTCGTAAGGCTCACATGATCATTCGA
TATGTAGCTGAACTTTAATTTTAATTATGTGCACGTACCAGCAAAATTAG
AGTATGACTAATAGCCGAGGGAGGAGAGAGGAGGAGGGGGGATGTTGACT
GACTTTAATCCGTAGCTGTGTACTTTTTATCAGCACAAGTAAATCAATTG
GGGGGGGGGGGGGGGGGGGGGGGGCAGTTTACCAGCAGGACAGACTCGGC
AATACCTACAGCATGTACACAAAAGAAGTTTTAATTTGGGAAATTTGGAG
GATTTTGGATTTGCTAAATAATGGATAAAAGTAGGAAAATGTACAATTTT
TATAGAATACGACAATAATCATCAAATTAATTAGAAACGGCTGAGGGATG
ACTCATCCCCAAATCGACCCGTTTAAGGGATGAAGGTCGGTGCGTCTACC
GTAATTTACCTGTTGGCATTGTTCTTGATGATGATGCTGATGCTGATGCT
GATGCTGATGCTGATGCTGATACTGATTTATTAGCAACTTGATCAATGCG
TTTGTTTTTCCCCGTCTACAACATCCACCCTGTTGTGCGTGTTCTTCCAC
ATCATTTTTTTATAGACTGTTCGCTGAGTTGTCCGCATGCGTACACGTTA
TTTTCCAGAAGACACTTGGGTCATATTGTCCGGCTCGGCATTGCAGATTC
ACTAAACACGGCTTTTTTATGTACTGGTCCCGTCGGCCGTCAGGCCGCTG
ATTTGTTTCGGAGAGTGTGGCAGCTGACGACGGGAACTGATGATTTCCGT
ATTCTGATCTGATCTGATCAGATCAGATTAGATCAGATCAGATGCGCACT
TGTGATATTTTCAGCCCTTCATTCCCTCTTTCTCCCCTTTCTCCCCCCCT
TCCTTTTCTCATTGGGCATTTAAAATAATTTTTTGATTTAAAAAAAAAAA
AAAAAGACCCAATTTGTCGCCCACTTGTTCAAACGACGAAGCAGAGAAAA
AATAACTGGTTCGGATAATTAATTGAAGAACCGGTTCTGTTGATGTTGAT
CAAGGACTGTTTTTCTGGACTACACAACCGTAACATAACATGCATGACGG
AGAATCAAGATGAACGGCGATCGTCGTGTGTGTAGGTGCCATGTGTAATA
GATTATGTCGATCTGGTAACATGAAAAAAGCCATTTTTGTTTTTTTGTTC
ACCTTAATCCGTTTTTTTCCGGTTTTTTTATCGGCCAGTGCGGCCAGTGC
GGTCGTTTCGACTCGGATCGGTTTCCGTCGGCTCTTCTCGTGGCGTGGAG
GCTACCCAGTCAGAATCCGCCGCGGCCGCTGTCTTTGTCGCGATCAGGCA
CGGCCAATCCGGCAGTCGGGGCGTTCAATCCGATGACCACTTATTTCACG
GCTCTCAGGTGATATATACTCGGAGTATATGTTTTTGACAAACGCCCGAA
CGGTTAGGGTAGCTCGTGAACTGAGCATGACTGGAAGTCATAGTCAGAGG
TCTTTTAGTGGGTGCAACCCCCACACTGTCTACCTGGTTCGGCCGAACCG
GGGTGGCGCCTACCCCGCAGAGGAATAAATAGCTTTGTTCTGTAAAAGGA
AATGTAGAAATACTTCGGTATTGAAGCATCCGATAAAGGTTTTTGCCTTA
ACCTTTCGGGGGGCTAAAAATATATATGTAGATCTATATATATCTATATA
TTTTTGACAATTTTGTAACATACGTGTTTGTTTGCTTGGGACGTCTTGAT
AGCACACCAACATAGAAAAGCGGTATTTTTGTATAGGAGGGTACTGGTAT
CAACGAACAGGTACCAACCCTTGAAGAACCGGACTTGGTAACAGCTGAAA
GATAGTTTTGCCAACGACCAATTGTAAATAATGATTGCGTTAGCATAATG
TCTCGAGTAGCCCTAGAGAGTTGGTTATTGCATCTCAGGTGCACAGTGGG
CGGGCATTTGTTGCTGAGGTGGGGGCTGTTTATTTTGGGTCTAGTGTAGA
GGGAACGCGGGCAGACATCAGCTTTTTCATGACGGCCAAATGATAAAACA
AGCAGTCCATACTACTAGGTCATAAGTTTCCAACGGGTTAAAATATATCC
ACGGTCGGGCTCTGGCAATCTGTGTCCGCTTGTGTCCTCGACTCTTCCAC
AACGGCGCGCTGCACTCCATGACGATTCATTTTTTATAAGTTACTGGAGT
ACAGAGTTGCAAATTTGATCCGGAATAATGATAATTTTGTGACCTTAACA
GATAGTGGTGGTGAGGATGGTGATGGTGATGTTCGCCTGTTTGACCAAGT
TTAACATACTGTATCCCCCCAAGTGGGTTCGTTGCGTAGCCTTGGCCTTG
GCCTAGTTTACCAATGTATCCTTGCTCTGTCTTGGGAAGTGCTGTAATGG
TGAAATAGAGGGTCTGTCGAAGTTCGCACGTGTACGGAGCACATGATACC
CCCCCTCCCCCCCCCTCCCTTCAACCCTCGTTTTGACTTGGTGAAAACGA
AAAACAAAATGGAAAAAAATAAATAAAAAATTGAGCCTCAGTTTTCGGCG
TATGTTCCGATTTTTTTTTTTTTTTACCTCCTGGACAAATACGAATACTT
ACAAATGGTTTTTCACCAAAAATTGAAAGTATTCGCCTGAGTTTTCAGAA
TAAGCAGACAAAAGGAATGAAATACTGTACCCCACCCTTGTCCATTCGAT
TTACAAGTATCATTAGCAGTCGTGGATAGTCCGGGGCACATAGAATACAC
GACCTCATTTGGAAACCCAGACGAATATTCATCAGTTTTTTGTGAAAACT
TCTGCAAGTGTTCGTATTCGAACGGGACAGTATACGATCTGGTTTTCGAG
ATATTGGCAGGAACCGCGGTCTAACAGGTAGGGTATGCAACGCGTGAGAC
CCTCCCCCCCCCCCACGCACACACACCATTGCATCAGCATACTGATGTAA
GTTTCAACCGCCTTCTACTACTGCCATGCGTTATCATAAGCACACACACC
CCTACTCTCCCCCCGCCCCGTCATTTGGCTATTATACCTACCGCCAATAG
GCGCGTGAGTTCACCACCCCGAGATATCACGAATCCTGGGAACGTTCTCA
AGAACGATGACGATGATTATACTAGCGGCAGTAACAATAATAGCAAAAAC
GGACTGATTTTGCGCGGGTGGGACGGTGGCGGAAGCGGTGAGGTGGTGGG
CGGAAGGGTCGCTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig18616:1466..4831+

>mRNA_H-paniculata_contig18616.4602.1 ID=mRNA_H-paniculata_contig18616.4602.1|Name=mRNA_H-paniculata_contig18616.4602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig18616:1466..4831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCAGATTCTTGTGGGGTCGCTGCTGTTAGACTGGGCGACACTATC
GTCCATTCCGGCGAATCCTCAACAGATGTGTCAGATTCTTGTGGGGTCGC
TGCTGTTAGACTGGGCGACACTATCGTCCATTCCGGCGAATCCTCAACAG
TGCGGCCAGTGCGGTCGTTTCGACTCGGATCGGTTTCCGTCGGCTCTTCT
CGTGGCGTGGAGGCTACCCAGTCAGAATCCGCCGCGGCCGCTGTCTTTGT
CGCGATCAGGCACGGCCAATCCGGCAGTCGGGGCGTTCAATCCGATGACC
ACTTATTTCACGGCTCTCAGTGCGGCCAGTGCGGTCGTTTCGACTCGGAT
CGGTTTCCGTCGGCTCTTCTCGTGGCGTGGAGGCTACCCAGTCAGAATCC
GCCGCGGCCGCTGTCTTTGTCGCGATCAGGCACGGCCAATCCGGCAGTCG
GGGCGTTCAATCCGATGACCACTTATTTCACGGCTCTCAGGCGCGTGAGT
TCACCACCCCGAGATATCACGAATCCTGGGAACGTTCTCAAGAACGATGA
CGATGATTATACTAGCGGCAGTAACAATAATAGCAAAAACGGACTGATTT
TGCGCGGGTGGGACGGTGGCGGAAGCGGTGAGGTGGTGGGCGGAAGGGTC
GCTGGCGCGCGTGAGTTCACCACCCCGAGATATCACGAATCCTGGGAACG
TTCTCAAGAACGATGACGATGATTATACTAGCGGCAGTAACAATAATAGC
AAAAACGGACTGATTTTGCGCGGGTGGGACGGTGGCGGAAGCGGTGAGGT
GGTGGGCGGAAGGGTCGCTGGC
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