mRNA_H-paniculata_contig1860.4598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1860.4598.1
Unique NamemRNA_H-paniculata_contig1860.4598.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 110 bits (275), Expect = 4.990e-26
Identity = 53/122 (43.44%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    7 RWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLS 366
            +  +L+AP++ E+F++ P  F   S + +  V RL+KSLYG KQSGRNWN  LD++L+  G   +  D C+Y  + + GE  I+V ++VDDL+IA    +K+ +FK N+  +FRMKDLG +S
Sbjct:  257 KTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEIS 376          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.490e-26
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   16 YLNAPVEEELFVKLPPQFSPF-SRDIPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
            YL + +EE+++VK PP +  + S     V RLRKSLYG KQSGRNW+  +D +  G G   S+ DPCLY      GE  +++ +YVDDL+I    RE V +FKH ISR F MKDL  L
Sbjct:   90 YLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKEL 206          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.710e-26
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   16 YLNAPVEEELFVKLPP---QFSPFSRDIPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
            YL + +EE+++VK PP   Q  P   ++  V RLRKSLYG KQSGRNW+  +D +  G G   S+ DPCLY      GE  +++ +YVDDL+IAG  R+ VD+FK  IS+   MKDL  L
Sbjct:   90 YLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKEL 206          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A2G8LML6_STIJA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LML6_STIJA)

HSP 1 Score: 103 bits (258), Expect = 1.350e-25
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    1 GCRWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLS 366
            GC++ YLNA ++ E+FV+ P  +   S D    V +L+KSLYG KQSGRNWN  L + L   G Q +  D CLY      G+ DI V V+VDDLVIA   E +  EFK  +  +F+MKDL  +S
Sbjct:   58 GCQFAYLNADIDTEIFVRQPEGYEVMSEDGEELVWKLQKSLYGLKQSGRNWNQLLHEHLTSEGFQRNPADHCLYHRG--VGDQDIYVLVWVDDLVIAASNETLMSEFKDCMKIKFKMKDLLEIS 179          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 109 bits (272), Expect = 2.370e-25
Identity = 52/122 (42.62%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    7 RWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLS 366
            +  +L+ P++ E+F++ P  F   S + +  V RL+KSLYG KQSGRNWN  LD++L+  G   +  D C+Y  + + GE  I+V ++VDDL+IA    +K+ +FK N+  +FRMKDLG +S
Sbjct:  282 KTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEIS 401          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.340e-24
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   16 YLNAPVEEELFVKLPPQFSPF-SRDIPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
            YL + +EE+++VK P  +  + S     V RLRKSLYG KQSGRNW+  +D +  G G   S+ DPCLY      GE  +++ +YVDDL+I    RE V++FKH ISR F MKDL  L
Sbjct:  530 YLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKEL 646          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A7D9F138_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F138_PARCT)

HSP 1 Score: 105 bits (263), Expect = 3.530e-24
Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    7 RWVYLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLS 366
            +  +L+AP+  E+F++ P  F   S + +  V RL+KSLYG KQSGRN N  LD++L+  G   +  D C+Y  + + GE  I+V ++VDDL+IA    +K+ +FK N+  +FRMKDLG +S
Sbjct:  241 KTAFLHAPINHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNLNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDLGEIS 360          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.470e-23
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   16 YLNAPVEEELFVKLPPQFSPFSRDI-PFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
            YL + +EE++++K PP +  +  +    V RLRKSLYG KQSGRNW+  +D +  G GL  S  DPCLY      GE  +++ +YVDDL+I    R   D+FK +ISR F MKDL  L
Sbjct:  310 YLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKEL 426          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.070e-23
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   16 YLNAPVEEELFVKLPPQFSPFSRD-IPFVRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSL 363
            YL + +EE+++VK P  +  +  +    V RLRKSLYG KQSGRNW+  +D +  G G   S+ DPCLY      GE  +++ +YVDDL+I    RE VD+FK  ISR F MKDL  L
Sbjct:  319 YLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKEL 435          
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 98.2 bits (243), Expect = 5.160e-23
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    7 RWVYLNAPVEEELFVKLPPQFSPFSRDIPF-VRRLRKSLYGFKQSGRNWNNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSLS 366
            +  YLNAP++ EL+V+ P  F+   +D  + V +LRKSLYG KQSGRNWN+ L   LV  G   S +D C+Y      G++  +V ++VDD++IA      +   K N+S+RF+MKD+G LS
Sbjct:   94 KTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKIS--GKSMTIVIIWVDDIIIASNCTVTLTNVKGNLSKRFQMKDMGKLS 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1860.4598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HG25_PARCT4.990e-2643.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TCB8_9STRA8.490e-2648.31Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA9.710e-2647.50Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A2G8LML6_STIJA1.350e-2545.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HLY2_PARCT2.370e-2542.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T0T3_9STRA2.340e-2447.46Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A7D9F138_PARCT3.530e-2442.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA1.470e-2345.76Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA2.070e-2346.61Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7D9L0S1_PARCT5.160e-2343.44Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1860contigH-paniculata_contig1860:14514..14879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue6.9e-17
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.890926-CDS-H-paniculata_contig1860:14513..148791622929437.890926-CDS-H-paniculata_contig1860:14513..14879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1860 14514..14879 +
1691480861.2465212-CDS-H-paniculata_contig1860:14513..148791691480861.2465212-CDS-H-paniculata_contig1860:14513..14879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1860 14514..14879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1860.4598.1prot_H-paniculata_contig1860.4598.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1860 14514..14879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1860.4598.1

>prot_H-paniculata_contig1860.4598.1 ID=prot_H-paniculata_contig1860.4598.1|Name=mRNA_H-paniculata_contig1860.4598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
GCRWVYLNAPVEEELFVKLPPQFSPFSRDIPFVRRLRKSLYGFKQSGRNW
NNNLDDFLVGIGLQHSTTDPCLYFSRDKEGETDILVAVYVDDLVIAGRRE
KVDEFKHNISRRFRMKDLGSLS
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mRNA from alignment at H-paniculata_contig1860:14514..14879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1860.4598.1 ID=mRNA_H-paniculata_contig1860.4598.1|Name=mRNA_H-paniculata_contig1860.4598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig1860:14514..14879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGTAGATGGGTGTATTTGAATGCCCCCGTAGAAGAAGAGCTGTTCGT TAAGCTACCCCCCCAGTTTTCTCCTTTCTCCCGGGACATACCGTTTGTGC GCCGCCTGCGTAAAAGCCTGTATGGCTTCAAGCAGAGTGGCCGAAACTGG AATAACAATCTTGATGATTTTCTTGTTGGGATAGGACTCCAGCATTCCAC TACCGACCCATGCTTATACTTCTCTCGCGATAAAGAGGGAGAGACAGACA TTCTCGTGGCCGTCTATGTTGACGACCTGGTCATCGCTGGACGTCGTGAG AAAGTAGACGAGTTCAAACACAACATAAGTCGGCGTTTCAGGATGAAAGA CTTGGGCTCTCTCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1860:14514..14879+

>mRNA_H-paniculata_contig1860.4598.1 ID=mRNA_H-paniculata_contig1860.4598.1|Name=mRNA_H-paniculata_contig1860.4598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig1860:14514..14879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGTAGATGGGTGTATTTGAATGCCCCCGTAGAAGAAGAGCTGTTCGT
TAAGCTACCCCCCCAGTTTTCTCCTTTCTCCCGGGACATACCGTTTGTGC
GCCGCCTGCGTAAAAGCCTGTATGGCTTCAAGCAGAGTGGCCGAAACTGG
AATAACAATCTTGATGATTTTCTTGTTGGGATAGGACTCCAGCATTCCAC
TACCGACCCATGCTTATACTTCTCTCGCGATAAAGAGGGAGAGACAGACA
TTCTCGTGGCCGTCTATGTTGACGACCTGGTCATCGCTGGACGTCGTGAG
AAAGTAGACGAGTTCAAACACAACATAAGTCGGCGTTTCAGGATGAAAGA
CTTGGGCTCTCTCTCGGGATGTAGATGGGTGTATTTGAATGCCCCCGTAG
AAGAAGAGCTGTTCGTTAAGCTACCCCCCCAGTTTTCTCCTTTCTCCCGG
GACATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTATGGCTTCAAGCA
GAGTGGCCGAAACTGGAATAACAATCTTGATGATTTTCTTGTTGGGATAG
GACTCCAGCATTCCACTACCGACCCATGCTTATACTTCTCTCGCGATAAA
GAGGGAGAGACAGACATTCTCGTGGCCGTCTATGTTGACGACCTGGTCAT
CGCTGGACGTCGTGAGAAAGTAGACGAGTTCAAACACAACATAAGTCGGC
GTTTCAGGATGAAAGACTTGGGCTCTCTCTCG
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