mRNA_H-paniculata_contig186.4597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig186.4597.1
Unique NamemRNA_H-paniculata_contig186.4597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A6H5J860_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J860_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 7.360e-80
Identity = 168/375 (44.80%), Postives = 227/375 (60.53%), Query Frame = 3
Query:   48 LELQARAVEGKNSDHADLTIQIARAQDNLRNLQRATKDTLGELKTKLVEQGETLTYVREKLWRAREESIEEEASVNDAW---LETTLEENANQLNQMRDELQEQLEGKKEAVLSRSELESRLWEAAQLPSSHNDDSENGVDQRMDQLIRVVARDFIDRAVETTLQNSDISGGLVARGEGQECVSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADSVISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLITFERDSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVH 1163
            LE   +AV   NS  A LT ++ RAQ++LR+L R+  D LG  + +L EQ  T+  +R+ + R  + +   E  +  A    LE+ L++N   L      ++  ++     V++ S+LE+ L  AA  PS     S +G     +  IR +++  +D A++T +  S    G    G G  CVSE  V E V+ AI +L ADGTG+ DYANAA+GG V  S     E    S  +    + W   GVE+G+GP +SVIS  SSLGACWAM+GS G VTIQL   ITV  VSVEHVSR++T E  SAPKE EV+G+R+ +D NP +LGS  YD+DG PIQTF IEPLG  F ++QF+I SNWGNP+YTC+YRLRVH
Sbjct:  157 LEALGKAVHEGNSRDAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQAGTMREIRDGMARVSQLAERREDRIAAAVHMKLESKLDDNLADLKDFYHTVEGHVDSLSPDVMTASDLEALLESAAAQPSERIGTSRDGDGDAAEHQIRALSKVAVDLAIKTRVLGSGSRDGSDESGGGGGCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSETYTPSSWWGPSRY-WHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKEIEVWGMRNKKDNNPAKLGSAVYDVDGRPIQTFPIEPLGVQFKLIQFKILSNWGNPDYTCLYRLRVH 530          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: D7FIC3_ECTSI (SUN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC3_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 8.900e-78
Identity = 167/383 (43.60%), Postives = 226/383 (59.01%), Query Frame = 3
Query:   48 LELQARAVEGKNSDHADLTIQIARAQDNLRNLQRATKDTLGELKTKLVEQGETLTYVRE------KLWRAREESIEEEASVNDAWLETTLEENANQLNQMRDELQEQLEGKKEAVLSRSELESRLWEAAQLPSSHNDDSENGVDQRMDQLIRVVARDFIDRAVETTLQNSDISGGLVARGEGQECVSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGF-----DWTVTGVESGIGPADSVISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLITFERDSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVH 1163
            LE   +AV   NS  A LT ++ RAQ++LR+L R+  D LG  + +L EQ  T+  VR+      +L   RE+ I   A+     LE+ L++    L      ++E ++     V++ S+LE+ L  AA  PS   D S +G     +  IR +++  +D AV+T +       G         CVSE  V E V+ AI +L ADGTG+ DYANAA+GG V  S      + + S TY+   +      W   GVE+G+GP +SVIS  SSLGACWAM+GS G VTIQL   ITV  VSVEHVSR++T E  SAPKE EV+G+++ +D  P +LGS  YD+DG PIQTF IEP G    ++QF+I SNWGNP+YTC+YRLRVH
Sbjct:   37 LEALGKAVHEDNSGDAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQSGTMREVRDGTARVSQLAERREDRI---AAAVHMKLESKLDDILADLKDFYHTVEEHVDSLSPDVMTASDLEALLESAAAQPSERTDTSRDGGGDAAEHRIRALSKAAVDLAVKTRVLGGGSRDGXXXXXXXXGCVSEGAVREEVDVAIGKLMADGTGMRDYANAALGGKVLTS------KGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPKKITVDGVSVEHVSRMVTTESGSAPKELEVWGMKNKKDKKPAKLGSAVYDVDGRPIQTFRIEPPGEQIELIQFKILSNWGNPDYTCLYRLRVH 410          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A482W613_9CUCU (Sad1 UNC domain containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482W613_9CUCU)

HSP 1 Score: 139 bits (351), Expect = 3.080e-32
Identity = 94/247 (38.06%), Postives = 138/247 (55.87%), Query Frame = 3
Query:  456 VDQRMDQLIRVVARDFIDRAVETT--LQNSDISGGLVARGEGQECVSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADS---VISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLITFER--DSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVHNTYA 1175
            +++R+  L + + +D+ D ++E T  L    +   LV R      ++EE++ ++V+  +   DAD TGL DYA  ++GG +  +          + +Y  G    +V G+     P++S   VI    + G CWA     G + I+L+  I V + S+EHVSRL+  E   DSAPKEFEVYGL +  D  PV++G   YD DG PIQ F  +  G  F +V+ RIKSN GNPNYTC+YR RVH T +
Sbjct:  136 LERRLFALTQNLTKDY-DVSIENTAKLVMERVVTRLVDRRFDSGSITEEQIKKVVKSTLMIYDADKTGLVDYAMESMGGHIVTT--------RCTESYHTGTAVISVLGIPLWY-PSNSPRIVIVPGINPGECWAFQNFPGFIVIKLATRILVEAFSLEHVSRLLVPEGRIDSAPKEFEVYGLDNENDKEPVKIGEYVYDYDGDPIQYFAAQQHGLIFTMVEVRIKSNHGNPNYTCLYRFRVHGTIS 372          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A8J6H8V3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6H8V3_TENMO)

HSP 1 Score: 133 bits (335), Expect = 4.160e-28
Identity = 79/199 (39.70%), Postives = 111/199 (55.78%), Query Frame = 3
Query:  585 VSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADSVISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLITFER--DSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVHNTYA 1175
            +S+E++ ++V+ A+   DAD TGL DYA   +GG +  +  R  E    +   S  G       +   +     VI+   + G CWA     G + I+L+  + + + SVEHVSRL+  E   DSAPKEFEV+GL    D   V++G   YD DG PIQ F  +  G  F +V+ R+KSN GNPNYTC+YR RVH T +
Sbjct: 1295 ISDEQIRKVVQSALRIYDADRTGLVDYAMEPLGGEIVTT--RCTESYSGTAVISVLGIPVWYPSISPRV-----VITPGINPGECWAFQNFPGFLVIKLAARVRLEAFSVEHVSRLLVPEGKIDSAPKEFEVFGLNSENDREAVKIGEYVYDYDGDPIQYFAAQETGLVFTMVEIRVKSNHGNPNYTCLYRFRVHGTLS 1486          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A8K0GFV5_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0GFV5_9COLE)

HSP 1 Score: 131 bits (329), Expect = 6.650e-28
Identity = 87/272 (31.99%), Postives = 146/272 (53.68%), Query Frame = 3
Query:  375 LSRSELESRLWEAAQ-LPSSHNDDSENGVDQRMDQLIRVVARDFIDRA--VETTLQNSDISGGLVARGEGQECVSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADSVISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLIT--FERDSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVHNTYA 1175
            +++ +LE  L    Q L S++ D   N     MD+++  ++++   R   ++T +Q  +  G L       + +++E + ++V ++I+  DAD TGL DYA  + GG + ++      Q  T+     G   W  +          +VI+   + G CWA     G + I+LS  + + + S+EH+S+++    + DSAPKEF VYGLR+  D  P  LG   YD +G+ +Q F ++  G  F+I++ RI SN GNPNYTC+YR RVH + +
Sbjct:  403 VAKQDLEMHLANLTQHLKSNYEDMIRNNEKLIMDKVMAEISKELNYRIENIQTKIQKHETVGELKL-----DALTDEHIRKIVMDSIALYDADKTGLVDYALESAGGHILSTRCTESYQARTAVLSVFGIPLWYPSNTPR------TVITPGVTPGECWAFQNFPGFLLIKLSAPVKITAFSMEHISKMLAPNGKIDSAPKEFSVYGLRNESDKEPTLLGKYMYDYNGASLQYFDVQNDGLIFDIIELRIHSNHGNPNYTCLYRFRVHGSLS 663          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A7F5RMC3_AGRPL (SUN domain-containing protein 2 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5RMC3_AGRPL)

HSP 1 Score: 132 bits (331), Expect = 7.170e-28
Identity = 96/273 (35.16%), Postives = 144/273 (52.75%), Query Frame = 3
Query:  375 LSRSELESRLWEAAQ-LPSSHNDDSENGVDQRMDQLIRVVARDFIDRA--VETTLQNSDISGGLVARGEGQECVSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADS---VISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLI--TFERDSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVHNT 1169
            +++++LESRL    Q L S+ +   EN     MD +   ++ +  DR   +E T+Q  D  G L       + +++E V  +V+E +   DAD TGL DYA    GG V ++          S TY  G    +V G+     P ++   VI+   + G CWA     G + I+L+  I + + S EH+S+ +    + DSA K+F VYGL++  D  P+ +G+  YD DG  +Q F  E  G TF I++ R+ SN GNPNYTC+YR RVH T
Sbjct:  589 VAKNDLESRLANLTQNLKSNFDHLIENSGHVIMDDVTTKISDELHDRLEKLEQTMQQKDFRGELTV-----DTLTDEYVKGIVKEVLEIYDADKTGLVDYAMEPSGGQVLST--------RCSETYHAGTAVISVLGIPLWY-PTNTPRTVITPGVNPGECWAFQNFPGFLVIKLAAPIKIDAFSYEHISKKLMPNGKIDSALKDFAVYGLKNETDTEPILIGTYHYDHDGPSLQYFAAESHGLTFEIIELRVFSNHGNPNYTCLYRFRVHGT 847          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: UPI000C251E21 (uncharacterized protein LOC111510856 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C251E21)

HSP 1 Score: 131 bits (329), Expect = 9.890e-28
Identity = 77/197 (39.09%), Postives = 110/197 (55.84%), Query Frame = 3
Query:  585 VSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESG--IGPADSVISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLIT--FERDSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVH 1163
            +SEE V  +V+ A+   DAD TGL DYA   +GG +  +          +  Y  G    +V GV     +    ++I+   + G CWA     G   I+LS  I V + S+EH+S+L+    E DSAPK+FEVYGL D +D  P++LG   Y+     +Q F ++ +G  F I++ R+ SNWGNPNYTC+YR RVH
Sbjct:  568 ISEEHVKRIVKNALLIYDADKTGLVDYAMETMGGQILTT--------RCTENYHYGKAVVSVLGVPLWYPVNSPRTIITPSINPGECWAFQNFPGFAVIRLSKRIKVEAFSLEHISKLLVPNGEIDSAPKQFEVYGLTDQDDKEPLKLGEYVYEDHKESLQFFPVQNVGHIFEIIELRVLSNWGNPNYTCLYRFRVH 756          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A7J6BEZ8_AMEME (SUN domain-containing protein n=3 Tax=Ictaluridae TaxID=7996 RepID=A0A7J6BEZ8_AMEME)

HSP 1 Score: 130 bits (327), Expect = 1.010e-27
Identity = 119/363 (32.78%), Postives = 180/363 (49.59%), Query Frame = 3
Query:  147 RATKDTLGELKTKLVEQGETLTYVREKLWRAREESIEEEASVNDAWLETTLEENANQLNQMRD---------ELQEQLEGKKEAVLSR-SELESRL--WEAAQLPSSHNDDSENGVDQR--MDQLIRVVARDFIDRAVETT--LQNSDI--SGGLVARGEGQECVSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADS---VISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLI--TFERDSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGT-TFNIVQFRIKSNWGNPNYTCIYRLRVH 1163
            R  +D L E+K  L + GE   +  E L    ++      +V+ A      EE+A   NQ+ D            E+L  + +A  S+ S+L++ L  W   QL  S +D+SE+    R  + + +  + +  +DR  +     +  D+  + G   + EG   VS  +V  +V  A+S   ADG G+ADYA  + G SV N+    +     S   S  GF            P++S   VI  +   G CW   GS G + I LSH + +  V++EH+ R++  T   DSAPK+F VYG+ + ED +   LG+  YD DG P+QTF ++   T  F +V+ RI SNWG+P YTC+YR RVH
Sbjct:  283 RDLEDVLKEIKL-LKQDGEKQKHTYEMLQTDVQDLKIRTRNVDSAHRSLIREESAGMQNQISDLRLDVSRLHSASERLSRRMDAQESQNSKLKTELSDWLLQQLQLSGSDNSEHDAMTRPELQRALEDLEKKILDRLGQEREDKERMDVWRTVGETLQEEGVGAVSVTDVERIVHRALSLHRADGIGMADYALESSGASVVNT-RCSETYHTRSACISLFGFPLWY--------PSESPRTVIQPELYPGKCWPFRGSEGFLVIALSHPVQITRVTLEHLPRVLSPTGHIDSAPKDFAVYGMINEEDKDGKLLGTFVYDQDGEPVQTFQVQHSRTEVFGLVELRILSNWGHPEYTCVYRFRVH 635          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A6J2X2Z0_SITOR (uncharacterized protein LOC115874360 isoform X1 n=3 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2X2Z0_SITOR)

HSP 1 Score: 131 bits (329), Expect = 1.190e-27
Identity = 86/220 (39.09%), Postives = 124/220 (56.36%), Query Frame = 3
Query:  522 TTLQNSDISGGLVARGEGQECVSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADS---VISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLITFER--DSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGT-TFNIVQFRIKSNWGNPNYTCIYRLRVH 1163
            TT++N+++ GG+          SE+E+ ++V+  ++  DAD TGL DYA  ++GG +  +          +  Y  G    ++ GV     P++S    I    + G CWA     G V I+LS  + + + S+EH+SRL+  E   DSAPKEFEVYGL    D  PV LG+  YD DG P+Q F I+  G   F++++ RI SN GNPNYTC+YR RVH
Sbjct:  620 TTVKNTEVVGGI----------SEDEIKKVVKGVLAIYDADRTGLVDYAMESMGGQIVTT--------RCTELYHYGKAVVSILGVPLWY-PSNSPRTAIRPGMAPGECWAFQNFPGFVVIKLSARVRLEAFSLEHISRLLVPEGKIDSAPKEFEVYGLVQENDREPVLLGTYTYDYDGEPLQFFPIQTPGLQVFDMIELRIVSNHGNPNYTCLYRFRVH 820          
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Match: A0A834HUT1_RHYFE (SUN domain-containing protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834HUT1_RHYFE)

HSP 1 Score: 130 bits (328), Expect = 1.500e-27
Identity = 77/198 (38.89%), Postives = 115/198 (58.08%), Query Frame = 3
Query:  585 VSEEEVHELVEEAISRLDADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESGIGPADS---VISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLITFER--DSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTFNIVQFRIKSNWGNPNYTCIYRLRVH 1163
            +SE ++ ++V+  ++  DAD TGL D+A  ++GG +  +          +  Y  G    ++ GV     P +S   +I    + G CWA     G V I+LS  + + + S+EH+SRL+  E   DSAPK+FEVYGL++  D NP+ LG+  YD +G P+Q F I   G  F++V+ R+ SN GNPNYTC+YR RVH
Sbjct:  613 LSENDIKKVVKNVLAIYDADKTGLVDFAMESMGGQILTT--------RCTELYHSGKAVVSILGVPLWY-PRNSPRTIIRPSIAPGECWAFQNFPGFVVIKLSTKVKLEAFSMEHISRLLVPEGKIDSAPKQFEVYGLQEENDRNPILLGTFTYDYNGDPLQFFPINSFGLIFDMVELRVTSNHGNPNYTCLYRFRVH 801          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig186.4597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J860_9PHAE7.360e-8044.80SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIC3_ECTSI8.900e-7843.60SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A482W613_9CUCU3.080e-3238.06Sad1 UNC domain containing protein n=1 Tax=Asbolus... [more]
A0A8J6H8V3_TENMO4.160e-2839.70Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8K0GFV5_9COLE6.650e-2831.99Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A7F5RMC3_AGRPL7.170e-2835.16SUN domain-containing protein 2 n=1 Tax=Agrilus pl... [more]
UPI000C251E219.890e-2839.09uncharacterized protein LOC111510856 n=1 Tax=Lepti... [more]
A0A7J6BEZ8_AMEME1.010e-2732.78SUN domain-containing protein n=3 Tax=Ictaluridae ... [more]
A0A6J2X2Z0_SITOR1.190e-2739.09uncharacterized protein LOC115874360 isoform X1 n=... [more]
A0A834HUT1_RHYFE1.500e-2738.89SUN domain-containing protein n=1 Tax=Rhynchophoru... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig186contigH-paniculata_contig186:36005..46780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue5.2e-71
Seed eggNOG ortholog2880.D7FIC3
Preferred nameSUN3
KEGG koko:K06545,ko:K19347,ko:K21874,ko:K21875,ko:K21876
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005856,GO:0005874,GO:0005929,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007049,GO:0007059,GO:0007127,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008104,GO:0008150,GO:0008360,GO:0009524,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0019866,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031224,GO:0031514,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032878,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034992,GO:0034993,GO:0036126,GO:0042175,GO:0042802,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043495,GO:0043621,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044821,GO:0045132,GO:0045141,GO:0045143,GO:0045185,GO:0046605,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051235,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051303,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051656,GO:0051704,GO:0051726,GO:0061024,GO:0061842,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0070192,GO:0070197,GO:0070507,GO:0070727,GO:0071840,GO:0090220,GO:0090286,GO:0090435,GO:0097223,GO:0097224,GO:0097240,GO:0097729,GO:0098796,GO:0098813,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0106083,GO:0106094,GO:0120025,GO:0120038,GO:0140013,GO:1903046,GO:2000769
EggNOG free text desc.cytoskeletal anchoring at nuclear membrane
EggNOG OGsKOG2687@1,KOG2687@2759
Ec32 ortholog descriptionSUN domain
Ec32 orthologEc-11_001360.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04090
Exons9
Model size2488
Cds size1146
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.676827-UTR-H-paniculata_contig186:36004..373081622929437.676827-UTR-H-paniculata_contig186:36004..37308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig186 36005..37308 -
1691480861.1319144-UTR-H-paniculata_contig186:36004..373081691480861.1319144-UTR-H-paniculata_contig186:36004..37308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig186 36005..37308 -
1622929437.8520014-UTR-H-paniculata_contig186:46742..467801622929437.8520014-UTR-H-paniculata_contig186:46742..46780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig186 46743..46780 -
1691480861.23496-UTR-H-paniculata_contig186:46742..467801691480861.23496-UTR-H-paniculata_contig186:46742..46780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig186 46743..46780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.6915169-CDS-H-paniculata_contig186:37308..374231622929437.6915169-CDS-H-paniculata_contig186:37308..37423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 37309..37423 -
1691480861.143061-CDS-H-paniculata_contig186:37308..374231691480861.143061-CDS-H-paniculata_contig186:37308..37423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 37309..37423 -
1622929437.7106092-CDS-H-paniculata_contig186:38230..383281622929437.7106092-CDS-H-paniculata_contig186:38230..38328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 38231..38328 -
1691480861.1519103-CDS-H-paniculata_contig186:38230..383281691480861.1519103-CDS-H-paniculata_contig186:38230..38328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 38231..38328 -
1622929437.7310874-CDS-H-paniculata_contig186:39692..398761622929437.7310874-CDS-H-paniculata_contig186:39692..39876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 39693..39876 -
1691480861.1616383-CDS-H-paniculata_contig186:39692..398761691480861.1616383-CDS-H-paniculata_contig186:39692..39876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 39693..39876 -
1622929437.7480848-CDS-H-paniculata_contig186:41767..418621622929437.7480848-CDS-H-paniculata_contig186:41767..41862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 41768..41862 -
1691480861.1725445-CDS-H-paniculata_contig186:41767..418621691480861.1725445-CDS-H-paniculata_contig186:41767..41862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 41768..41862 -
1622929437.7639704-CDS-H-paniculata_contig186:42677..429741622929437.7639704-CDS-H-paniculata_contig186:42677..42974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 42678..42974 -
1691480861.1815972-CDS-H-paniculata_contig186:42677..429741691480861.1815972-CDS-H-paniculata_contig186:42677..42974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 42678..42974 -
1622929437.778834-CDS-H-paniculata_contig186:44123..442371622929437.778834-CDS-H-paniculata_contig186:44123..44237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 44124..44237 -
1691480861.1902893-CDS-H-paniculata_contig186:44123..442371691480861.1902893-CDS-H-paniculata_contig186:44123..44237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 44124..44237 -
1622929437.793853-CDS-H-paniculata_contig186:45518..456021622929437.793853-CDS-H-paniculata_contig186:45518..45602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 45519..45602 -
1691480861.1988494-CDS-H-paniculata_contig186:45518..456021691480861.1988494-CDS-H-paniculata_contig186:45518..45602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 45519..45602 -
1622929437.8118606-CDS-H-paniculata_contig186:45939..460261622929437.8118606-CDS-H-paniculata_contig186:45939..46026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 45940..46026 -
1691480861.214481-CDS-H-paniculata_contig186:45939..460261691480861.214481-CDS-H-paniculata_contig186:45939..46026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 45940..46026 -
1622929437.8346756-CDS-H-paniculata_contig186:46670..467421622929437.8346756-CDS-H-paniculata_contig186:46670..46742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 46671..46742 -
1691480861.2243066-CDS-H-paniculata_contig186:46670..467421691480861.2243066-CDS-H-paniculata_contig186:46670..46742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig186 46671..46742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig186.4597.1prot_H-paniculata_contig186.4597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig186 37309..46742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig186.4597.1

>prot_H-paniculata_contig186.4597.1 ID=prot_H-paniculata_contig186.4597.1|Name=mRNA_H-paniculata_contig186.4597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MKQLELQARAVEGKNSDHADLTIQIARAQDNLRNLQRATKDTLGELKTKL
VEQGETLTYVREKLWRAREESIEEEASVNDAWLETTLEENANQLNQMRDE
LQEQLEGKKEAVLSRSELESRLWEAAQLPSSHNDDSENGVDQRMDQLIRV
VARDFIDRAVETTLQNSDISGGLVARGEGQECVSEEEVHELVEEAISRLD
ADGTGLADYANAAVGGSVRNSGNRGDEQELTSPTYSRGGFDWTVTGVESG
IGPADSVISGDSSLGACWAMTGSSGRVTIQLSHDITVASVSVEHVSRLIT
FERDSAPKEFEVYGLRDVEDPNPVRLGSLFYDIDGSPIQTFGIEPLGTTF
NIVQFRIKSNWGNPNYTCIYRLRVHNTYAMV*
back to top

mRNA from alignment at H-paniculata_contig186:36005..46780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig186.4597.1 ID=mRNA_H-paniculata_contig186.4597.1|Name=mRNA_H-paniculata_contig186.4597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10776bp|location=Sequence derived from alignment at H-paniculata_contig186:36005..46780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAATTTGGAGAAGAGCTTGGGGCCGGTAGATGCGGAGATGAAACAGCTC GAACTACAGGCACGGGCCGTTGAAGGCAAAAATTCCGATCATGCCGATCT CACTATTCAGGTAAAAAAGGTGGCTCTACATACACATACATGCAATGTAT CATACTACAGGAGTTGGTGTAATGTGCCGTAGATTTACTCTCACAGTATA CCGCAAATTTTTACACCGAAATACTCCCTCTGTCCCATCAGTTTGGGCTG TTAAGTTGTAGCTTTTCGGGATGACCTCCGATTACAAAAGGGACTTCAGT TTTGGATTCCTCGGAATATGTTTTACATTGAAGGATAAATTTCAAACAAT TACGTCCATGGGAAAGCTCTTGAATAGTCTCGAAATAATGGAACACAAAA TATGACAAGTTCAGGTAATTTATTCATTCTTTCTTATAATTCTGCCCTGT TGGGTAAATTATGCTGTACCCGGAATAGGTCGAGCCATTGGTCCTAGAAT ATCGTGCAGATTTTAGTCATCCTCGCAGGCGCAATGCAAACGGCGAACAA ACTACATGTGTTTCAGATCATGCAGATCATGATATAATTATAGCAGCTAT TCAATCTAGTTCCGGGATATTTTTTGTTGAGGTAGAAAGTGCTGCTGATG TTGCTACGTTTGTATGCCTTTCAGAGATCGACAATTTTCTGATCTGATCT GATCTGAATCACTGCGATAACGATATTTTTATATATGATCTAATTTGCAC GCAGATCGCGAGAGCGCAGGATAATCTTCGTAACTTACAGCGCGCCACCA AGGATACATTGGGAGAGCTGAAGACAAAGCTGGTAGAGCAGGTGAAGACA TCTGATTTTCTGAGTGACTTTCTGTATTTTAAGTGTTTTGCGTTGTTTTG TGTGTGGTCTGTATGTGTGCTGGTTCTCTCCTTGCACCTTGTGTGAAGTC CAGCACTTCATGCATTAGACCTGGGTGGCCGCCGAGCTTGCTTCGTACAC CCATATAACATAACTAAGAAAAACGGTACGTACGGCTGCTACAGCATTGG TTTATTCGTCTATCGTAAGCTGTTATCTATACCATGCCTTATCTTACCTC ATTCTGTCTTGTTCCAGTTCACCCCCTCACTGCTTGTGGTCATTGGCCAT TAATTTCGGCGATCCGATCGCCTCTTAGGGGGAGACACTGACGTATGTTC GTGAAAAGCTTTGGCGAGCAAGGGAAGAGTCCATCGAGGAAGAAGCTTCT GTCAACGACGCTGTGAGTCGGACGCCCTCCACTTTGTCGTCTCTTTTTTG TTGGCAGTGACTGTCTCTGTGTCCTTCAGTCAGCCGCGTACCTGTACTTG ACAGCTTGCTGCTCTTTAGCGGGCTTTTGATTTGTTCAGGAGATCTAGTG TGGATCTGTCAATATGTGTGGCGTGACTGCCCGACACAAGAGCCGTTCGG GGCGGGGGACTTGAGTGCGTTGTTTGAGAATCTTGGTTTTTATTGAAAGG TGCTTTCAATTAGAAATGTCGACAACGACCGTCACTTTGACTGTCGTCGT TTTGCCAATGCTATTCTCAAGAGCATGTTTACGTCCGGACGTTTTTTTGT TTTTTTTTCGTTGAGACGGCTGTGTTATGAGATGTTGATAGCGGGACGTG ACAGTCATTGTCTAATGTGACGGTTCCATCCCCAATCCCTGGGGTTATGT AATGTAGCCTCAGTTTGAGCTGGGAGCAGGAAGCACAGAACGTGTTACCT CCCCACCAACTGACAGACTTATATCAACCCAGAGTTGTTCCTGACGTACA GCAACATACAGCTAATACAAGAGACCAGACCATTGCCAAGGACTACTTCT GCCACCCCAGCCGTACCGCTCTGAGAGTATTGTACAGCATAGTCAGTAAC AGGAAACAATAACCTACGTGTGTGAGATACTCGGCAAGACCGCACAGCAG TTAACATCACAACTGATGTTCAGTTTCTTATGAACATGCTGATATTGTAA AGCTACCGACTACAATACTGTGACGTAGGAGCTCTCACTCACTGCCTTTC AGAATTGGCTCGTAGAGCTTGATGTTCGGCCCTTTATCTTTTCTTTTTTC ATGTAATACATACAGAATGTCAGTACAGACAGAATGTCAAACCTTCTCCC TCAATATTGCTCGGACATCGTTATCACTTGCCAGTAGACAATTGCTGGCT CTCACATTCTCAAAGCGCGCACGCGCCCTTGCAGATGCTTTTTTTTTTAC ACTTTGGGGTCGGTCTGGATTATACACACGTACTCAAAACACATGGCCAC CCCCCCCACGTATCAAGTTGTTACGTTGAAGAGTGAGTACCCCCCCACAC ACCGTATTTTGTGATTGACTATCGAAAGAAACTTGGATAGGAAGAGAGCT CCGTCAGCTGAGGACGCTTGCTCAATGGTCCAACAACAAGAGCGTTCAAA ACATGAGTACGCCGTCCCCCCTACCCTGCTCCCTAACCCACGCCCGCTGG ATCCCGTCTTATCTCGTCCGCGGTACATTCCATGGGCATGTAGTGGTTGG AAACTACGCTGGAGGAGAACGCAAATCAGCTGAACCAGATGCGCGACGAG CTACAGGAACAACTCGAGGGAAAAAAAGAGGCAGTGTTGAGCCGGTCGGA GCTAGAGGTCAGTATGTTAGTGTTCAGGGAAGAATCAGCCAACCTCCAGT ACAGCAGTAACAAGCAATACATAGGATCTACCCTTGTTTCACTTTATTGT GATGACTTCTGATGACTCGCGTACAAGATGAGAACACCGACTTTGGTGTA TGAATCCATCTTTGTTGGTGGGAAAGGACACGATAAGGTACGGTCCAAAT TTCACAAGACGGACAATTCGTAAGTTACATTAGTTTTTTCACGATTCGTC GGATTGACCACCATTCAGTACGGAACAGATCGTCACAATGTACCCGTACC GGTGATCCGCACGAGCCGGGTCTGCTCTGCGAGCGTAGCGAGCCGTTGTG AGTCGCTGCGAGCGCAGCAAGCCGTTGTTGTCGTTAGGTCAAGAACAGAA TACGACGGCACGGTCAGACGTAGCCAGAGATAGGCTCTATTCAACTTTCA AAGTAGATCGTCCTGGCGGATGGACTTCTATATCTGTGATTGTTCGTTAC TTCAGACCCGTATCGCCCCTCTTTGTTGTTATTGGAGTTTTACCGAGAAA GGTACGCAACATCGATTCCAGTTATAGGGAGCATTGCCTCAGAGGGGGAA GATACATTCAACTCCCGAGGGTACAATTGTTTAGTTATATCATTCCAACT GAACAGCGGGGAGTTGTTTGCGCCACGAAAAAAGACGTAACGTGCCTGTA TACGTATATAGTGGAAAAGAATTCGAGGCTGCTGTACCCCTGTTTGTACG TAGTATCCTGTGGTGACTGCAAAAGCGGGTTGATTTGCGAACGAAGTGTC GCAGATATTCACGTCTACTCGTAGGTGATTCTGCCATGCCTGCGTTATTG TACTCTTCCTCAGCATCACCTCTTACCCCTAATGGGTGTGATTTGGAAGT TGCTTAATATTACTCATGTATATAGTCATGATCCATGATTACGGGCCACA TGAGCTCAGCATGAAATACACAACTATATCGTGAAACTAGTCTACATAGG ATTGTTGGGGGATGACGATAGATACTTTTGTCTCGGAATTGTTTTACTGG GGTCTGAAGTTGTCATATGCACGCCCCCCTAGTTTGGTGAGATGATGGAT AAGTAATCCCCCCCCCTCCCTGGGCCCGCGGTAATTAACGGCGAACGAAC AAGCAGTCGCGACTGTGGGAGGCGGCGCAACTCCCGTCGTCTCACAACGA TGACTCGGAGAATGGTGTGGACCAGCGCATGGACCAACTCATCCGGGTCG TCGCTCGAGATTTCATCGACCGCGCTGTTGAGACCACCCTCCAAAATAGC GATATCTCCGGGGGATTAGTCGCTCGCGGCGAAGGGCAGGAGTGCGTAAG CGAAGAGGAGGTACATGAGTTAGTCGAGGAGGCTATTTCAAGGCTAGATG CGGACGGCACCGGCCTGGCGGACTATGCCAATGCTGCGGTGGGAGGATCG GTGGTAAGTGTTGTTTTTTTTTTATCTCCGCCTTCAAAAGAACAAAAATC ATAATTTGTTGATATTTTGGTGTTTTTATCTATTATGTGTCTACCCTCTT TTTTTTTTGTTCTTGTGCGGGATGTTTTTCGTTACTTGTTGTCTTGTGCG GTAGATTGATAAGTAATTGTTGATTCTGCCCTCTGTTGAAATGGGGGCAA AAGCCTTCGAGTTTCTCAAAATGGGTTTTTGGAGTGTGGTAACACTTGTT TTTTAATATTGTGTTTAGAGCCCAGGTGTTTTTTCAGGGAAAACATCGTC GACTCTACACCGCACCGCATCCACCGTACCCACCCCCCGGTCTCTTTTTT TTCAAAATGATCTGAACTCACGAGGATTGCCAGGTTTAGGAAGGCTGACG TCTACGATTTCAGTCAAGGCGAGCAATCTCGCGCAAGAGCACTAAAGTAG TTATTTTATTCACTGTATCCCATGTAATCCCGACCCTCATTCCAAGACTT CAACGTGCCGCCGTGTTCCTTCGTTGTCCCTCTCCTCCCTCTCCGCGCTT ACACGAGTTCCCGTGCTCTCCATCCCCTGAAGAATGCATGGTCAAACGGT CTAGCAGTAGCAGGTATCAGCACCTCGGGTACGCATGCTGAACATCAGTA TGCTCGCCTTCGAGTGTCAACACGTGCTTATGAGTATAGTTATTATCCAG AGCTTTGAAGCACCAGCTGCACAATCTCAGGATGACTGACAAGTAGATGT CATCATCCAGAAGACTAGATAAATCAACAGGTCAGTACCCCCTCCCTTCC CCTTTCCCATTTGCGCAGCGCAACTCAGGAAATCGTGGAGACGAGCAGGA GCTGACTTCTCCAACCTACTCTCGCGGAGGCTTTGATTGGACCGTCACGG GTGTGGAGTCAGGGTAAGCTTTGAAGGGTTTGTTAGTAGTGTGAAATAAT CATTCCACGGTGTATCGGCGCGATCATTTTGTCGGGTTGAAATAGTGAAG CAGTCTGGAATAAGGCGTGTTTTTGTTGGTTATCCGAGATCTGACGACTT ATCATACATCCACAAACATGAAAAAGTGGACATGCTATTTATATATAGTA TCGATCATTTTTGACTCGGTAGCCAAAAGTGACTCACGCCTTGTGGAGCA ACGGCTCTTGGTCTCCCTCGAAAAAATTCCTTAGATAGAGCCAAGCCTAG CGTGTATGTGCTTCCCAGCGCCGCTGATTCTGGCGCTGCCGATGCATGGC TTGGTTCTCTCGTTTGCCATTGACCCGGGTGACCCCACCTGGCCCATATA CCTACAAAAGAGACCGACGGTATCGACTACGGTCCCGACTGCAGTCGCTG TTGGAGTCCTCGTATCCGTTATTTGCATCTAGTCCACACATGAATGGCTT GAGGAGGCATCGTAGGTCTCTCACCATCGACATGCTTATGATCCCTCGTC CCACCTTGTGTCTAATGGTGGAGTCTCCTGTCAACATTTGCGGCGGTACG GGGGAATTAATCAGGCAAGCAGCACCTATATTGGGGACCATAATTATTGT CTTCTCGTTATCTTCATGAACGAGATTTTTTTAACAGAAAAAAAGTTAAC TGGTCTCGGGGTAGGACGAATGTCGACAGTGCTAGTATCAGTGGCGCTCA GGTGAATCATGTTCAATTTTTCCACAATGTATCGCTGTTGGCGAGTCAAA ATGTCCTAGTGACTAAGATAAGGTCTTGTCTTAGGATATGTGTGTGAGCG TTCGATCTCCGTTATCAACATGAGAGCTACTAACATGATGTCCACGATGT CGACAGTATCTACATCATACCAGTTGTTGCTATTATAGAAATGAGTCGAG GCAGGCGATGGCTAGGATACAGAATTGATCACCCATGTCATGCATAGATA CCGCATGCAACCTAGACTTGTGGAAAGGTTTATGGGTTGCTGACGTGCGA GGCGAAGCCCACCTGATGCGCAGCAGCGCAAACACAACAACTTGACCAAA AGTGGGTCATCTTTTGTCCCTTTTAGTATTTTTTCTAACGGAAAAACGTG GAAAATGGGGGGGGAAAGTGACAGAAAAATGACCGAAGTTAGCCCAAGTT TCAGTGGCTAGTAATCGTGATACACGAATCGAAATACAGTTCGGAAGAGC TTGTATGGCTCTATCAGATTGTAGGTTTCCGTCGATATCGATATGGACAA CACCGGATGAGACCCCGCAGAGGGTTAGATACAACCCGCCAAACATAACT ACCTTCATTTATGCGACAGAGAAACAAAACGACGACCATATCACCGTATT GCATATTAAGGAAATGACCACAGGGGACATCTGCCACGAGACAACGTGAC CCTCACGGGACGGGACGAAATCATCATTCTGTCCCATCTCATCCCGATCC GCCGTTTTTTTTCAGGACAGGACCTAGTCCCGTTATGTCATATCCCGTAG TTGAGGGACCGAGTCTTGTCCCACCCAGTCCCGTCGCGTGTGGTTACGGA ATCCAGCGTGTTCCCGTAAGAAATCACGGGACCCTGGGATAAATCAGGTA AAATAAATCTCACGGGAACGTTTCGATCCGTATTAATAGATATCTATTCA CCCTATCCTCTCTCGTGGTTCCGTCAGGACCCCTTGGAAACGACCGTTTT GGTCTTGCCTTGACGTACGTGAAAACGGTTTTCGCCTCGCCTACTGCTCG TTTTTTTGTGTTTTGTGCTGTTGATGTTCGTTGTTGTTTTTGTGGTTGCC GCTCTTCGTTGAATGTGTCGATCTTCAACACTCTCCCCCGAAAAAAAAAA GCAGCATCGGGCCTGCGGATTCGGTGATATCAGGGGATTCGAGCCTCGGT GCATGCTGGGCAATGACGGGCAGCAGCGGGCGCGTGACGATCCAGCTTTC GCACGACATCACGGTGGCGAGTGTGTCGGTGGAGCATGTTTCCAGGCTGA TTACGTTCGAGCGTGACTCCGCGCCCAAGGAATTCGAGGTACAGTGGAGA ATGTAACAATATAGCGAAGTATAGTGAAGTAGAGGTACATTAAACCCATA TATTACGGGGCACTTCCTTTCAAACCAGTGTATAACTCCGTATGCAGTTG TCCTCATATATCTTTTTTCGGATCCAAAAGCCGTAAGGAGCAGGAAGTAT TAGCCAGAGAGTCAGACGTGTACGTGCCTGTGTTTTCATATTCCGAGAAA TCGTCCTTCTTGCTCCACACCTCAAGAGCTGTAACTGTGTTCAAGTCTGC CCATGATATTCCTTTGTACTGTTTCTCATGTTTCTGATGAAAAAATATGA GCGCCGTTTGAGTCCATCCGCGGCAGTGTCCCTCGTATGAGGATAACATG ATCGAGGTTGCTTAATCATCCCTTCATAGGGGGATTTCGCTCTATAGCTC CAAAGTAATAGAACGGTACTACTGTAGTCACCTTGTCGCCAGGTCAGGGC GGTGCCAGTGTCATGCCTCACTCTGACCCTATCACCACTATATGCAGGCC ATGGCGATGGATACACCATTATTGGCGTGTTCAACTGAGACGCCCTCGTG ACCATCTTATTTACCCTCTTGAAAACTTCCGACCATGATGAGCTGTGGAG TACTTTTTTAATCATTTGGCGGTAACGAAAAAGCCGTGTTTCTATGTTTT CTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CCACTGAATCGAAGATAAAAAAATCCTAGCACCGCAAAAACACGACCCGC TTCCGTACATTCGAATACATTCGCTAGTTGTCTAGAGCTGTTGAGCATAC ACAGTGGTTATTTTTCACTATTCACGACTGATCGTAAGCAAAAATGCTCT TTTTGGTCGTGATGAAGTCCGGCTCCTGAAGGGCTCAAGTGAAAAAAAAG TACAGTGGAGTGAAAAACAAGTACAGTAAATGAAGTCGTGAGGAATTCGT GTTGTTTTATACATGTAAGGTCATAATGATAATGGTCATGATCATGGAGC CGTGACTGGCCATGGCAACGAATTTGTCTTGTAATGAGACGTTGGTGTAG GTGAATGGAGTCCGGGATGAGAGGAGCTAGCTCACTCTCAGCTATACAAG ACCAAATAGAAACTTTAATTTGCAAAATAGAATTCCCTGTGCGCAAACAT TCCCAAGTCTACAGGAAATGGAGTATTTTTGTTGTTGTTTTAATAGAGGT CAACCCATGGTGATAATGATGATGATGATGATGATGGAGCCATGGCATTC CCCCCATGTCTGACCATTCATCCCTCCACTTGCTTGCACACCACGTTTCG CCTTGACTTTGGTTTTTATCCTCGTGATGCTCCGCTCTCTCGTTATTCAC AGGTGTACGGCCTCAGGGACGTCGAAGATCCCAATCCAGTCCGTTTGGGA TCGCTGTTTTACGATATAGACGGCAGCCCCATCCAGACATTTGGCATAGA GTGAGTACGTTATTCTGTAGCTGTAGCAAGTTTTTGTGTCTCGGGTTTGG GATTCGTTGTGTTGCCCATACTGCGTGTTGTCTTTACAATGATGGCTACG GCTCAGGCTACGGTATTAAGAACTTCCACATAGTCTGAACAAGTGTTACG AATACAGTCCACCCTTGGACAAAAACGAATACTTGTAAATGGTTTTCACA AAATAACTGAAGGTATTCGCCTGAGTTCAGATTGAGCTCGTGTATTCTAT GTTCCCCCGACCATCCATAAGTCCTATTAATAGTGATATTCGTAAAATCG AATGAAAGGAGGTGAGTACTTTGGTCCATGTGTCGGCTCATTCTGAAATT TAAACGAATACTTTCGGTTTGTTGTGAACCGTTTGCAAGTATTCGTATTT GTCCGGAGGGTGCAACAGTCACTCCCCAGACTTAGCAACTGACCTTTCCT TTCCGTACCATTACTAAAAAAATAGTTTCATATTCCAGAATTCTTCGGGG GGGGGTTCGTCCTTATTGTCCTATGCTAGAACCGTTCCACCTCACAAGGC TCCACAGGAAGAGCTCGCTGTTCTCGTGTTTTAAGTTCACGAGCTACCCT ACCCGTTCGGGCGTAGGTCCGTGGGCTATTTATCTATTTATACTACCATA TTCATGAGAAGTAGGGCTCTGTATATGATTGATCGATAGATAAAAACAAT GTATGTATGTGTATTATGTATGTATATGTATGCAATATATACAAAATGTT TCGAGGGAAACGATGGTTCACCCTTTTTTTTTCTCGTATTTTCTTTTGTC TTGGCAGGCCCCTGGGAACAACATTCAACATCGTACAGTTCAGGATCAAG AGCAACTGGGGTAATCCCAACTACACTTGTATATACCGCCTGCGCGTGCA CAACACCTATGCAATGGTGTAAATCAGGGCTTAGTTCTTGTAAACATGGT GTATCTAGGGATACTAGCAATTGTATAGAGATACTGAAAGAACTGCGGCC CCAAATATTTTTCGGTAGTGCTCCTAACCCAAAGTTTTCATTCATTAGCG AAAGATGGTGCTGACTAGTTTGATCGCCGGGGTTACTATCGTATCCAGGG GGGCTTATCATTGCTTTCAGGTTTCTTTCTGTTGTGTGTTGTGGCCGAGA TCGGAGAATTAGGCGAAGAGCAAATGATTGATGGAATTTACAAGAGAAAA AAAAAGCTCACGTCATACACAATGGTTGTGTGCATAGAATTTTCCGCGTT AAACTTGGCCCGAGAAAGCTACATTTTCAGTGAATAGTAGTGTTTACCCT GCCCCTTCTTAGGTGCCGGAGGCGGTTTTGGTATAGAATAACTGAGTCTG ACCATAAACGTCGAGTGCTGCAGTTGTTGCACACGGAATCACGCCAGCTC CCTGCCTGTGTGTGCTCCATCCAGTGTACTGTGTCTGAATAAACAGCGGT GATTTCCTATCCCCGAATAATAGTCATTAATAGTCGTGCCCTAGGCATTT ATTTCCCCTGTTGTATCAGGTGGCTATCATGGAAGTGAGGCCGGCGCCTA CTTGGTTGATTGATTGAGACTGTTAGTACCACGGTTAAAGCTTATGCTGG CGAGGCGGGGAAACGTTGTGATTCCTGGATATATGATGAGAGGGGTGAGT CAGCGGCATCATGTTTCAGTGTCAAGTACAGCATTTCTTGGAGATACTAG TGCATCGCCGGGTTATTGGGAGGAGAGTGTTTCCAAGAAGATTCGAGCGT GTCATATGCACCCCAACCAACAGCTGGGAAATCCTGTTATTCAACGAGTT TTGATGATAGGTGTACAAAACTGGAGTTTGAGGCCAGTTGCATAATGACC TCAACATGGGAAATCTCTCCCTCCCTGTTGAAGGAAATGTAGAAATATTT CGGTATGGAAACATCGGATAAAGGTTTTTACCTTAGCCTTCCGAGGGTTA AAAAAAAAAAATCCCTTCCTCCCTGGTGAGTTAACTTGGACTGAAAAGGG TATCTAGCTGGGTTGTTGAAACTTGCTCATCCGCCGGCGTGTGTACCACG GTGTTCACATCACCGGCGTTATACACTCCTCGAAACGTCTGTACGCTATG CACCCATGTACCGGGTTCACAATCGGGTGAGTTCCGGCATGTGGGATTTT TACGTTAGTCCACCAGTTTTGTTCCCGTCACATTTTATTATGTAACTGTC AGTCGTGGCCGATGCTGATTCATTCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig186:36005..46780-

>mRNA_H-paniculata_contig186.4597.1 ID=mRNA_H-paniculata_contig186.4597.1|Name=mRNA_H-paniculata_contig186.4597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig186:36005..46780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAGCTCGAACTACAGGCACGGGCCGTTGAAGGCAAAAATTCCGA
TCATGCCGATCTCACTATTCAGATGAAACAGCTCGAACTACAGGCACGGG
CCGTTGAAGGCAAAAATTCCGATCATGCCGATCTCACTATTCAGATCGCG
AGAGCGCAGGATAATCTTCGTAACTTACAGCGCGCCACCAAGGATACATT
GGGAGAGCTGAAGACAAAGCTGGTAGAGCAGATCGCGAGAGCGCAGGATA
ATCTTCGTAACTTACAGCGCGCCACCAAGGATACATTGGGAGAGCTGAAG
ACAAAGCTGGTAGAGCAGGGGGAGACACTGACGTATGTTCGTGAAAAGCT
TTGGCGAGCAAGGGAAGAGTCCATCGAGGAAGAAGCTTCTGTCAACGACG
CTGGGGAGACACTGACGTATGTTCGTGAAAAGCTTTGGCGAGCAAGGGAA
GAGTCCATCGAGGAAGAAGCTTCTGTCAACGACGCTTGGTTGGAAACTAC
GCTGGAGGAGAACGCAAATCAGCTGAACCAGATGCGCGACGAGCTACAGG
AACAACTCGAGGGAAAAAAAGAGGCAGTGTTGAGCCGGTCGGAGCTAGAG
TGGTTGGAAACTACGCTGGAGGAGAACGCAAATCAGCTGAACCAGATGCG
CGACGAGCTACAGGAACAACTCGAGGGAAAAAAAGAGGCAGTGTTGAGCC
GGTCGGAGCTAGAGTCGCGACTGTGGGAGGCGGCGCAACTCCCGTCGTCT
CACAACGATGACTCGGAGAATGGTGTGGACCAGCGCATGGACCAACTCAT
CCGGGTCGTCGCTCGAGATTTCATCGACCGCGCTGTTGAGACCACCCTCC
AAAATAGCGATATCTCCGGGGGATTAGTCGCTCGCGGCGAAGGGCAGGAG
TGCGTAAGCGAAGAGGAGGTACATGAGTTAGTCGAGGAGGCTATTTCAAG
GCTAGATGCGGACGGCACCGGCCTGGCGGACTATGCCAATGCTGCGGTGG
GAGGATCGGTGTCGCGACTGTGGGAGGCGGCGCAACTCCCGTCGTCTCAC
AACGATGACTCGGAGAATGGTGTGGACCAGCGCATGGACCAACTCATCCG
GGTCGTCGCTCGAGATTTCATCGACCGCGCTGTTGAGACCACCCTCCAAA
ATAGCGATATCTCCGGGGGATTAGTCGCTCGCGGCGAAGGGCAGGAGTGC
GTAAGCGAAGAGGAGGTACATGAGTTAGTCGAGGAGGCTATTTCAAGGCT
AGATGCGGACGGCACCGGCCTGGCGGACTATGCCAATGCTGCGGTGGGAG
GATCGGTGCGCAACTCAGGAAATCGTGGAGACGAGCAGGAGCTGACTTCT
CCAACCTACTCTCGCGGAGGCTTTGATTGGACCGTCACGGGTGTGGAGTC
AGGCGCAACTCAGGAAATCGTGGAGACGAGCAGGAGCTGACTTCTCCAAC
CTACTCTCGCGGAGGCTTTGATTGGACCGTCACGGGTGTGGAGTCAGGCA
TCGGGCCTGCGGATTCGGTGATATCAGGGGATTCGAGCCTCGGTGCATGC
TGGGCAATGACGGGCAGCAGCGGGCGCGTGACGATCCAGCTTTCGCACGA
CATCACGGTGGCGAGTGTGTCGGTGGAGCATGTTTCCAGGCTGATTACGT
TCGAGCGTGACTCCGCGCCCAAGGAATTCGAGCATCGGGCCTGCGGATTC
GGTGATATCAGGGGATTCGAGCCTCGGTGCATGCTGGGCAATGACGGGCA
GCAGCGGGCGCGTGACGATCCAGCTTTCGCACGACATCACGGTGGCGAGT
GTGTCGGTGGAGCATGTTTCCAGGCTGATTACGTTCGAGCGTGACTCCGC
GCCCAAGGAATTCGAGGTGTACGGCCTCAGGGACGTCGAAGATCCCAATC
CAGTCCGTTTGGGATCGCTGTTTTACGATATAGACGGCAGCCCCATCCAG
ACATTTGGCATAGAGTGTACGGCCTCAGGGACGTCGAAGATCCCAATCCA
GTCCGTTTGGGATCGCTGTTTTACGATATAGACGGCAGCCCCATCCAGAC
ATTTGGCATAGAGCCCCTGGGAACAACATTCAACATCGTACAGTTCAGGA
TCAAGAGCAACTGGGGTAATCCCAACTACACTTGTATATACCGCCTGCGC
GTGCACAACACCTATGCAATGGTGTAAGCCCCTGGGAACAACATTCAACA
TCGTACAGTTCAGGATCAAGAGCAACTGGGGTAATCCCAACTACACTTGT
ATATACCGCCTGCGCGTGCACAACACCTATGCAATGGTGTAA
back to top