mRNA_H-paniculata_contig186.4595.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: A0A6H5JNB4_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB4_9PHAE) HSP 1 Score: 601 bits (1550), Expect = 8.850e-206 Identity = 329/587 (56.05%), Postives = 406/587 (69.17%), Query Frame = 3
Query: 153 MPLSVRAQVVVGLFGTIILLQGVSAGWAWLERRRHSKLVTRLDVNPELKEALQSIKQVLQAFEKDVRDDMKLDAARDTLPAAIVNMLVLNTVHERAAALEAPPVDGLKSKLLPKDEEIGMDAARYIRFASAAYGMLMLKGANVMSWDCGWPDRSKLSRKEVNSWCITKHCGVAEEDLVKINLFETRKLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGISRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKEVSTVGANLPSRCKYLLREHMPHVCVDDDGLGARGVMVSLRYSTILHRTRSRGGKNKNKSKSTLDPKGKEEKPVANGKERQDPLESFVLRKLEEDFTADGRARLPNPKN--------------------EYRARRTA------VMAHRMGNDKYEKLIIPGNIFHMRKLGDIAAAALDG---EGGAVGARSKAVYWMERELPIQFARILMVDTAIVDHLPKSYEDALHNLYGEGLPQK 1826
M S + V VGL T++ + AGW W E R +TR ++PEL EALQSIK V+ AFE+D+R D+K D RD +P A+VN+LVLNTVHERAA+L+APP GLK+ LLP DE +G +AARY+RFASAAYG+ MLKGANVMSWD GWP K S E+N WCITKHCG+ + DLVK+N R+LH+PAY++ VDHAT+SVVLS+RGTFS+QD VTDL+CDSA+FMGGSCHRGLRQGAE LL AK D+++ L+++ GYRLV+ GHSLGGGVS LLTM++L RR ELG+ T VLCYAFAPPPVFGPL K+ E + AIR+FVF NDMV R+SLA+AY LFRDLKEV +GA+LP R YL+ EH P + + DDGLG + V+ RY+TILHRTRSRGG NK + +G K A G P+E FV KL E FT G AR K E R+++ V A D+Y +L+IPG I+H+RKLG +AAA VG RSK +YWMER+ P +F R+LMVDTAIVDHLP +YEDALH LYG+GLP++
Sbjct: 1 MSASRKRTVAVGLISTLLGVPAAYAGWEWAENTRLLNQITRSFISPELGEALQSIKGVVTAFERDLRTDVKWDWKRDRVPNALVNLLVLNTVHERAASLQAPPKAGLKANLLPSDEAVGKEAARYMRFASAAYGIFMLKGANVMSWDSGWPPVHKFSVLELNKWCITKHCGIQDSDLVKMNTLGERELHMPAYVLTVDHATESVVLSIRGTFSMQDTVTDLVCDSADFMGGSCHRGLRQGAEMLLAVAKSDVLQQLNRHRGYRLVVTGHSLGGGVSILLTMMLLRRRSELGLGS-TRVLCYAFAPPPVFGPLEKLSGETQWAIRSFVFGNDMVSRMSLASAYELFRDLKEVERIGASLPQRLGYLVNEHRPRLSIHDDGLGDVRMRVAYRYATILHRTRSRGGNNKRGGYRSSQ-RGAGGKRGA-GATSVHPVEDFVRNKLAEGFTETGAARGAYQKRDRDGGVGPRMASEDAWRTGRELEVRKSSSERGGGVEADGGSADRYTRLLIPGTIYHIRKLGPESAAAASAGVCSENPVGLRSK-LYWMERQQPEEFERLLMVDTAIVDHLPLAYEDALHALYGDGLPRR 583
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: D7FIB1_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB1_ECTSI) HSP 1 Score: 487 bits (1253), Expect = 7.420e-163 Identity = 264/463 (57.02%), Postives = 325/463 (70.19%), Query Frame = 3
Query: 528 IRFASAAYGMLMLKGANVMSWDCGWPDRSKLSRKEVNSWCITKHCGVAEEDLVKINLFETRKLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGISRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKEVSTVGANLPSRCKYLLREHMPHVCVDDDGLGARGVMVSLRYSTILHRTRSRGGKNKNKS-KSTLDPKGKEEKPVANGKERQDPLESFVLRKLEEDFTADGRARLPNPKNE----YRARRTAVMAHRMGN----------------------DKYEKLIIPGNIFHMRKLGDIAAAALDG---EGGAVGARSKAVYWMERELPIQFARILMVDTAIVDHLPKSYEDALHNLYGEGLPQK 1826
+RFASAAYG+LMLKGANVMSWD GWP K S E+N WCI KHCG+ + DLVK+N+ R+LH+PAY++ VDHAT+SVVLS+RGTFS+QD VTDL+CDSA+FMGGSCHRGLRQGAE LL DAK D+++ L+++ GYRLV+ GHSLGGGVS LLTM++L R+ ELG+ T VLCYAFAPPPVFGPL K+ E K+AIR+FVF NDMV R+SLA+AY LFRDLKEV +GA+LP R YL+ EH P + + DDG G G+ V+ RY+TILHRTRSRGG NK +S+ G + A G P+E FV KL E FT G AR + K + R R + A R G D+Y +L+IPG I+H+RKLG +AAA +G RSK +YWMER+ P +FAR+LMVDTAIVDHLP +YEDALH LYG+GLP+K
Sbjct: 1 MRFASAAYGILMLKGANVMSWDSGWPPVHKFSVLELNKWCIAKHCGIQDSDLVKMNILGERELHMPAYVLTVDHATESVVLSIRGTFSMQDTVTDLVCDSADFMGGSCHRGLRQGAEMLLADAKSDVLQQLNRHRGYRLVVTGHSLGGGVSILLTMMLLRRKSELGLGS-TRVLCYAFAPPPVFGPLDKLSRETKRAIRSFVFGNDMVCRMSLASAYELFRDLKEVEGIGASLPQRLGYLVNEHRPRLSIHDDGRGDVGMRVAYRYATILHRTRSRGGNNKRGDYRSSHRGAGGKRGAGATGGH---PVEDFVRNKLAEGFTETGAARGADRKRDRGGGVRPRMASEDAWRTGREREVSKTSSECGGGGEADGGSGDRYTRLLIPGTIYHIRKLGPESAAAASAGVCSANPLGLRSK-LYWMERQQPEEFARLLMVDTAIVDHLPLAYEDALHALYGDGLPRK 458
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: A0A7S0R525_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R525_9CHLO) HSP 1 Score: 156 bits (394), Expect = 4.630e-37 Identity = 120/375 (32.00%), Postives = 192/375 (51.20%), Query Frame = 3
Query: 138 TPDLIMPLSVRAQVVVGLFGTIILLQGVSAGWAWLERRRHSKLVTRLD--VNPELKEALQSIKQVLQAFEKDVRDDMKLDAARDTLPAAIVNMLVLNTVHERAAALEAPPVDGLKSKLLPKDEEIGMDAARYIRFASAAYGMLMLKGANVMSWDCGWPDRSKLSRKEVNS-----------WCITKHCGVAE-EDLVKINLFETRKLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQ--NIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGISRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKEVSTV 1214
TP PL VR + +V +++ L V +R + V RL + P L+EA++ I+ L+ LD+ DT ++N+ + + E A P GL + ++ ++ DA ++RFAS AYG + K ++ D K + + + W I KH + + +D++ + +H P + I +DH ++VVLSVRG+ SV D +TDL+C+S F+ G H G+ GA +L A++ LV L++ + Y+LV+ GHSLG G + LLTM++L + I +V C+AFAPPPVF PL K+ +AI+ FV+RND+VPRLSL + L +K ++
Sbjct: 47 TPVAGKPLGVRIENIVAC--SVVALSTVVVIGVGTQRIFGASPVERLRDAIPPSLREAMRQIEGALKPI---------LDSVADTRHPLLLNLAAVARLQEELTV--AHPT-GLS---ICQNRDVVADALHWMRFASCAYGFAVCKALG-LTGDFSMQTVRKGAMAQTTNITQVQEIADKLW-IVKHTNLRDRQDVLMYSNAIFNHVHSPCFYIALDHNMRAVVLSVRGSMSVGDTLTDLVCESTAFLSGEAHAGIAAGANNVLAQARETLVDVLTRFSDEEYKLVVTGHSLGAGTAILLTMLLL----DDPIFVTCQVECWAFAPPPVFTPLEKISPRCHRAIKCFVYRNDLVPRLSLFSVRRLCLQVKAADSM 398
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: D8LQ91_ECTSI (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ91_ECTSI) HSP 1 Score: 143 bits (361), Expect = 5.790e-32 Identity = 111/376 (29.52%), Postives = 179/376 (47.61%), Query Frame = 3
Query: 342 KDVRD----DMKLDAARDT-LPAAIVNMLVLNTVHER-----------AAALEAPPVDGLKSKLLPKDEEIGMDAARYIRFASAAYGMLMLKGANVMSWDCGWP--DRSKLSRKEVNSWCITKHCGVAEEDLVKINLFETRKLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRE-------------------LGISRRTEVLCYAFAPPPVFGP---------------LSKVPVEAKKAIRAFVFRNDM---VPRLSLANAYGLFRDLKEVSTVGANLPSRCKYLLREHMPHVCVDDDGLGARG 1304
KD+RD D+++ A LP +N L++ +H+R +A P VD L P+D +A Y RFA+A+Y ++ +++ P D S ++ WCI+K GV D+ ++ ++ L + + VDHA++SVV+S+RGT+S D + DL+C++ +F GG H+G+ Q A + + ++ K L ++ Y+LVL GHSLG G + LL +++ E L + R V CYAFAPPPVF L + P+ A R F R+D VP +SL + Y L R ++ V + ++ R +++L + V + GLGA G
Sbjct: 64 KDLRDAGSEDIQISAEEGKRLP---LNFLMVKAMHDRQLLARRSRTAKTSARNRPRVD-----LSPRDRRTLRKSAHYARFAAASYDGVVDTVKEILAEGDTLPPPDLFAKSNDDLRKWCISKRTGVDPSDVKELATSDS--LETRTHFVAVDHASRSVVISIRGTYSFTDTMVDLLCNTVDFAGGKAHQGISQSAVRVWTAVRGEVEKQLREHSDYKLVLTGHSLGAGTAILLKILLERNAMEALKGGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNGLMQHPLSRAIARRWFWRRHDRADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRV-RVQQSEQGLGAAG 428
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: A0A448Z1V4_9STRA (Lipase_3 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1V4_9STRA) HSP 1 Score: 136 bits (343), Expect = 4.670e-31 Identity = 90/260 (34.62%), Postives = 140/260 (53.85%), Query Frame = 3
Query: 432 ERAAALEAPPVDGLKSKLLPKDEEIGMDAARYIRFASAAYGMLMLKGANVMSWDCGWPDRSKLSRKEVNSWCITKHCGVAEEDLVKINLFETR--KLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGISRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKEV 1205
E +++L PP +K LL +A RY+++A+A YG M+ A V D G K+ R V I+ H V E+D+V +++ + HL +++VVDH + VVLS+RGTFS+++ + D+ S EF GG H + AE + A + + LS+N GY +L GHSLG G + LL++++ +++ + R + C+AFA PPV+ PL VP + FV ND+VP LS+ L L+ V
Sbjct: 43 EFSSSLSPPPCSKIKRSLLE-------EARRYMKYATAVYGQAMINAAQV---DAGGRLDGKVGR--VTKETISAHIQVPEDDIVLLDVSNLKGSSNHL-RHMVVVDHEHEKVVLSIRGTFSLEEIIMDVAAFSREFCGGEAHSEMANMAERVWTVAGPKIKEVLSENPGYEFILTGHSLGAGAACLLSILVQNKKF---LPREQGIRCFAFASPPVYTPLEFVPKTVRSTTN-FVHENDVVPFLSIQKVRKLLSSLQAV 285
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: A0A7S2TJX1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJX1_9EUKA) HSP 1 Score: 136 bits (342), Expect = 6.200e-30 Identity = 92/268 (34.33%), Postives = 143/268 (53.36%), Query Frame = 3
Query: 447 LEAPPVDGLKSKLLPKDEEIGMDAARYIRFASAAYGMLMLKGANVMSWDCGWPDRSKLSRKEVNSWC-----ITKHCGVAEEDLVKIN-LFETRKLHL---PAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGISRRTE------VLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKEV 1205
L + P D L P EI + RY FA++AYG ++ ++S D R+ SR E S I + G++EED+ + +ET H P + + +D TK+V+LS+RGT S+ DA+TDL+C + +GG H G+ + A +L LV+ L + G++LV+ GHSLGGGV+ +L +++ + + R + + YAF PPPVF PLS++ E ++ I FV D+VPRLS + FR L+ +
Sbjct: 151 LSSGPCDETDGGLPPP--EISRETHRYCLFATSAYGAIITAATGLLSADSR--TRALRSRMEQGSEAGMVRTICETTGISEEDVAFLRPAYETSSGHASLCPMHFVAIDSETKAVILSIRGTASLSDALTDLLCAPRKMLGGVAHDGILRSAFAVLGHVSARLVEILRDHPGFKLVVTGHSLGGGVALVLALLLKAAQEQDRDGRIPKLPLDVLIEAYAFGPPPVFTPLSELKQEWQQGIYTFVHGMDVVPRLSFVSVLETFRRLQAI 414
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: A0A7S4M7F5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M7F5_9EUKA) HSP 1 Score: 134 bits (336), Expect = 1.410e-29 Identity = 82/244 (33.61%), Postives = 140/244 (57.38%), Query Frame = 3
Query: 471 LKSKLLPKDEEIGMDAARYIRFASAAYGMLMLKGANVMSWDCGWPDRSKLSRKEVNSWCITKHCGVAEEDLVKINLFETRKLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGISRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKE 1202
L++ L+ +E ++ Y +F++ AYG ++ G + + R L+ + N++CI +H G++ +D++ + + H PA+ + VDH T+SVVL++RGTF ++DA+TDLI S FM G H G+ + A LE K ++ +L + GYRLV+ GHSLG G + L+++++ ++E ++ C+A+APP VF + + I++F ND+VPRLS YG LK+
Sbjct: 105 LRTNLVEDNETTIRESYHYFKFSAVAYGWKLMNGLMFDNKE-HMIMRGFLTGDQQNNFCICEHTGISLDDIIATK-WTSSDFH-PAHFVAVDHRTESVVLAIRGTFHIKDALTDLIAHSVPFMDGKVHNGMLKCATKKLETVKQTILDSLEKYEGYRLVVVGHSLGAGTAALVSLLL---KKEYPTM---DIQCFAYAPPCVFD--ISLANLCRTFIKSFALENDVVPRLS----YGSMEALKD 333
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: A0A7S3FHY2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FHY2_9EUKA) HSP 1 Score: 133 bits (334), Expect = 2.280e-29 Identity = 100/329 (30.40%), Postives = 154/329 (46.81%), Query Frame = 3
Query: 342 KDVRDDMKLDAARDTLPAAIVNMLVLNTVHERAAALEAPP--------VDGLKSKLLPKDEEIGMDAARYIRFASAAYGMLMLK--------------------GANVMSWDCGWPDRSKLSRKEVNSWCITKHCGVAEEDLVKINLFETRK-----LHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGI-----------SRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDL 1196
KD M+L D P+ + +L + RA +E PP + ++ L P+ E+ A +RFA AAYG +L + M+ D R + + + W I+ + G+A+ DLV + + + + V+H+T ++VL++RGT SV DA+ D++ + F GGS H G+ + A + A +V+ L+ N GY LV+CGHSLG GV+ LLT+ + R + S+ T + C+AFA PPV+ PLS P + A+ AFV D VP LS+A LF L
Sbjct: 52 KDFASSMRL--LEDIHPSFSRPLTLLLPILARAQRVEDPPKAAAAGLSAEARQAALSPEALEM---AGHILRFACAAYGHALLAMFKLMPLRPPAAAAAQIEATATHQMAPDTTVGTRFSVRAEALERWAISTYTGIADADLVSMKMANALADVVGDADCLRHFVAVNHSTSAIVLALRGTASVSDAIHDVVAYAEPFCGGSAHAGMARMARNVWAAAGPAVVEQLASNEGYGLVICGHSLGAGVAALLTLYLYEERAKRSSRSSAATHSPIPSQATRIRCFAFACPPVYAPLSSAPPGSLDAVAAFVGGVDCVPTLSVAAGRLLFAQL 375
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: UPI000C788F53 (uncharacterized protein LOC111703874 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C788F53) HSP 1 Score: 130 bits (328), Expect = 1.130e-28 Identity = 72/213 (33.80%), Postives = 123/213 (57.75%), Query Frame = 3
Query: 639 SWCITKHCGVA-----EEDLVKINLF--ETRKLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHSLGGGVSTLLTMIILHRRRELGISRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKEVSTVGANLPSRCKYLLRE 1256
SW +TKH G+A EE+ + F E+++ H P +I+ D +S++LS+RGTFS++D VTD++C F+ G H+GL +GA ++ ++ L A+ + G+++VL GHSLG G + L+ + + + T+V C A APPPV+ +++P + + +I+ +F ND+VPRLSL N L L+ + + + S L+ +
Sbjct: 178 SWALTKH-GIAKTMLIEEEDILYTWFKDESQEAHCPKFILFKDDELESIILSIRGTFSIKDVVTDVVCVDQPFLDGHAHKGLVKGALQIITLVQESLKSAVQNHPGFKVVLTGHSLGAGTAELIYLELTLGASSNILPPGTKVECLALAPPPVYRSSTELPDKVQDSIKIIIFNNDLVPRLSLGNIANLLVKLRSLDDLNIPIISLISILINK 389
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Match: A0A835YZP1_9STRA (Intra-flagellar transport protein 57-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP1_9STRA) HSP 1 Score: 131 bits (330), Expect = 6.980e-28 Identity = 80/221 (36.20%), Postives = 125/221 (56.56%), Query Frame = 3
Query: 621 SRKEVNSWCITKHCGVAEEDLVKINLFETRKLHLPAYIIVVDHATKSVVLSVRGTFSVQDAVTDLICDSAEFMGGSCHRGLRQGAEYLLEDAKDDLVKALSQNIGYRLVLCGHS-------LGGGVSTLLTMIILHRRRELGISRRTEVLCYAFAPPPVFGPLSKVPVEAKKAIRAFVFRNDMVPRLSLANAYGLFRDLKEVSTVGANLPSRCKYLLREHM 1262
SR ++ W I+ G+A ED++ I T + + ++ + VDH +KSVV+++RGT S+ D++ DL+ D+ F GGS HRG+ + AE + + + L +N GY+LVL GH LG GV+ LL ++LH R+ I R EV Y++ PP+F PLS +P ++ FV R D+VPR+SLA L + V+ + P +YLL + +
Sbjct: 447 SRADLERWYISDQVGIAVEDVILIE--PTDSVEMRSHFVAVDHNSKSVVVTIRGTMSIVDSMLDLLLDTTPFAGGSAHRGIARCAETFWDKLGPIINEQLQRNDGYKLVLTGHRHVLMRSHLGAGVA-LLVSLLLHDRKA--IDRPVEV--YSYGAPPLFAPLSAIPRAVAESTWCFVNRTDVVPRMSLAEGSRLLWTSRRVAQLDLPAPLLLRYLLEQEL 660 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig186.4595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig186.4595.1 >prot_H-paniculata_contig186.4595.1 ID=prot_H-paniculata_contig186.4595.1|Name=mRNA_H-paniculata_contig186.4595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=579bp MFPLLCWDSISTPDLIMPLSVRAQVVVGLFGTIILLQGVSAGWAWLERRRback to top mRNA from alignment at H-paniculata_contig186:15552..26739- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig186.4595.1 ID=mRNA_H-paniculata_contig186.4595.1|Name=mRNA_H-paniculata_contig186.4595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11188bp|location=Sequence derived from alignment at H-paniculata_contig186:15552..26739- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig186:15552..26739- >mRNA_H-paniculata_contig186.4595.1 ID=mRNA_H-paniculata_contig186.4595.1|Name=mRNA_H-paniculata_contig186.4595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3474bp|location=Sequence derived from alignment at H-paniculata_contig186:15552..26739- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |