mRNA_H-paniculata_contig18599.4593.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18599.4593.1
Unique NamemRNA_H-paniculata_contig18599.4593.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: D8LEK3_ECTSI (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK3_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 6.680e-108
Identity = 175/225 (77.78%), Postives = 186/225 (82.67%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKXXXXXXXXXXXXXXXXXXPADLAK-VRWDSVPSS 672
            QGGWALVAEQIAYAAGAARSILMDR LDPEGMKDDDRL IVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANS+VF QGKHYGVPGVNVDGQDMLQML  GRAVTDYVR  GPAILQVQTYRF GHSPADPEHERGRK EK WARATQDP+AI++S AL+ G  T+EELD  KK+                  PA LAK + +  +PS+
Sbjct:  210 QGGWALVAEQIAYAAGAARSILMDRQLDPEGMKDDDRLTIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSDVFAQGKHYGVPGVNVDGQDMLQMLSTGRAVTDYVRKNGPAILQVQTYRFSGHSPADPEHERGRKQEKRWARATQDPLAIYESEALEFG-ITKEELDAAKKRAGVTVKAAVEFADASPPPPASLAKELEYPDLPST 433
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: A0A836C8J1_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J1_9STRA)

HSP 1 Score: 291 bits (745), Expect = 6.280e-91
Identity = 140/191 (73.30%), Postives = 159/191 (83.25%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKK 573
            QGGWALVAEQ+ YA GAARSIL+DRHLDP G ++DDR+ IVF+GEG AQNGRMAE LNAAAKEKLP++FLVIDNGRAINTFTPDVAANS+V+ QG+HYGVPGV VDGQ+M+ +L+ GRAVTDY R  GPAI+QV TYRF GHSPADPEHERGRKDEK WARA  DPIA+F+      G  T EEL  V  +
Sbjct:  138 QGGWALVAEQLPYAVGAARSILLDRHLDPAGTRNDDRVTIVFVGEGGAQNGRMAECLNAAAKEKLPIIFLVIDNGRAINTFTPDVAANSDVYLQGRHYGVPGVLVDGQNMVDVLRAGRAVTDYARQNGPAIMQVHTYRFNGHSPADPEHERGRKDEKRWARAEMDPIALFEKRCATEGIATAEELKAVSDR 328
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: R1B9S2_EMIHU (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B9S2_EMIHU)

HSP 1 Score: 291 bits (746), Expect = 1.670e-90
Identity = 146/215 (67.91%), Postives = 166/215 (77.21%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKXXXXXXXXXXXXXXXXXXPADLAK 645
            QGGWALV EQ+ YAAGAARSIL+DR LDP+G KDDDR+A+VF+GEG AQNGRMAE LNAAAKE LPLLF+VIDNGRAINTFTPDVAAN++VF+QG+HYGVPG+ VDG  M Q LK GRAV DYVRT+GPAI+QV TYRFQGHSPADPEHERGRKDEK WARA  DPI +F++    +G     +LDG  K                   PA+LAK
Sbjct:  207 QGGWALVCEQLPYAAGAARSILLDRQLDPDGTKDDDRIAVVFVGEGGAQNGRMAECLNAAAKENLPLLFIVIDNGRAINTFTPDVAANNDVFEQGQHYGVPGIRVDGGSMEQTLKTGRAVVDYVRTKGPAIMQVHTYRFQGHSPADPEHERGRKDEKKWARAEADPIKLFEADEAASGL----DLDGALKSVKAVVKQSLDFARESPPPPAELAK 417
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: A0A482SZZ3_9ARCH (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZZ3_9ARCH)

HSP 1 Score: 290 bits (742), Expect = 3.050e-90
Identity = 138/189 (73.02%), Postives = 159/189 (84.13%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVK 567
            QGGWALV+EQ+ YA GAARSIL+DRHLDP G +DDDR+ IVF+GEG AQNGRMAE LNAAAKE LPLLF+VIDNGRAINTFTPDVA NS+V+ QG+HYGVPGV VDGQ++   L+ GR V DYVR +GPAILQ+ TYRF GHSPADPEHERGRKDEK WARA  DPI IF+ +AL  G FT+ EL+ ++
Sbjct:  163 QGGWALVSEQLPYAVGAARSILLDRHLDPAGQRDDDRITIVFVGEGGAQNGRMAECLNAAAKENLPLLFVVIDNGRAINTFTPDVAQNSDVYLQGQHYGVPGVKVDGQNLEDTLRTGRVVVDYVRQKGPAILQIHTYRFNGHSPADPEHERGRKDEKKWARAEADPIKIFEQSALTRGLFTEHELEKMR 351
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: A0A7S0VUT6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUT6_9CRYP)

HSP 1 Score: 281 bits (718), Expect = 7.110e-90
Identity = 134/191 (70.16%), Postives = 160/191 (83.77%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKK 573
            QGGWALV+EQ+AYA GAARSILMDR   PE  KDD R+ +VF+GEG AQNGRMAE LNAAAKEKLP+LFLVIDNGRAINTFTPDVA N+++++ GKHYGVPG+ VDG + +  ++ GRAVTDYVR QGPAI+QV T+RF GHSPADPEHERGRK+EK WARA+ DPI  F+  A+++G  T+EEL  VKK+
Sbjct:  244 QGGWALVSEQLAYATGAARSILMDRLNYPEQYKDDKRMTVVFVGEGGAQNGRMAECLNAAAKEKLPILFLVIDNGRAINTFTPDVATNNDIYKLGKHYGVPGLKVDGTNAVDTMRAGRAVTDYVRNQGPAIMQVHTFRFNGHSPADPEHERGRKEEKVWARASADPITHFEQVAVESGIATEEELAAVKKE 434
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: L1J1I5_GUITC (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J1I5_GUITC)

HSP 1 Score: 286 bits (733), Expect = 5.410e-89
Identity = 145/215 (67.44%), Postives = 163/215 (75.81%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKXXXXXXXXXXXXXXXXXXPADLAK 645
            QGGWALV+EQ+ YAAGAARSIL+DR L PE  KDDDR+++VF+GEG AQNGRMAE LNAAAKE LPLLF+VIDNGRAINTFT DVA N +VF QG+HYGVPGV VDGQDM+ +L+ GRAV DYVR  GPAILQV T+RF GHSPADPEHERGRKDEK WAR   DPI IF+   L +G FT+EEL  +K K                  PA LAK
Sbjct:  156 QGGWALVSEQLPYAAGAARSILLDRMLHPEQHKDDDRISVVFIGEGGAQNGRMAECLNAAAKENLPLLFIVIDNGRAINTFTGDVAKNQDVFLQGQHYGVPGVKVDGQDMVGVLQAGRAVVDYVRKSGPAILQVHTFRFNGHSPADPEHERGRKDEKKWARNAADPIKIFEDKMLASGKFTEEELKELKAKASAACKDAVDFANKSPAPPATLAK 370
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: W7TYT3_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYT3_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.640e-87
Identity = 142/215 (66.05%), Postives = 160/215 (74.42%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKXXXXXXXXXXXXXXXXXXPADLAK 645
            QGGWALV+EQ+ YA GAARSIL+DR LD EG KDDDR+ IVF+GEG AQNGRMAE LNAAAKE LP+LFLVIDNGRAINTFTPDVAANS+VF+ G HYG+PGV VDGQ+M   LK GRAV DYVR +GPAILQV TYRF GHSPADPEHERGRK+EK WARA  DPI IF+     A   T+ +L+  + +                  PA LAK
Sbjct:  226 QGGWALVSEQLPYAVGAARSILLDRELDTEGKKDDDRITIVFIGEGGAQNGRMAECLNAAAKEGLPILFLVIDNGRAINTFTPDVAANSDVFKAGMHYGIPGVKVDGQNMADTLKTGRAVVDYVREKGPAILQVHTYRFTGHSPADPEHERGRKEEKRWARAEADPIVIFEEVTAPANGITEADLEACRAEAKATVKKAVEFADASSPPPAGLAK 440
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: A0A0M0JRY3_9EUKA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRY3_9EUKA)

HSP 1 Score: 277 bits (709), Expect = 6.140e-85
Identity = 137/215 (63.72%), Postives = 161/215 (74.88%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKXXXXXXXXXXXXXXXXXXPADLAK 645
            QGGWALV+EQ+ YAAGAARSIL+DRHL+PE  K DDR+++VF+GEG AQNGRMAE LNAAAKE LP+LFL+IDNGRAINTFT DVAAN ++F+QG+HYGVPG+ VDG D++  +K GRAV DYVR  GPA+LQV TYRFQGHSPADPEHERGRK EKTWARA  DPI IF++    AG     + DG   +                  P +LAK
Sbjct:  224 QGGWALVSEQLPYAAGAARSILLDRHLEPEKFKGDDRISVVFIGEGGAQNGRMAECLNAAAKENLPMLFLIIDNGRAINTFTEDVAANMDIFKQGEHYGVPGIKVDGSDLVNTMKTGRAVVDYVRKNGPAMLQVHTYRFQGHSPADPEHERGRKAEKTWARAECDPIKIFETVPEAAGL----DFDGASARAKEEVKRSLDFAKASEAPPRELAK 434
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: A0A8J6CFX7_DIALT (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFX7_DIALT)

HSP 1 Score: 268 bits (685), Expect = 1.300e-81
Identity = 136/215 (63.26%), Postives = 159/215 (73.95%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKXXXXXXXXXXXXXXXXXXPADLAK 645
            QGGWALVAEQ+ YA G ARSIL+DR L   G KDDDR+AIVF+GEG AQNGRMAE LNAAAKE LP+LF+VIDNGRAINTFTPDVA NS VF QG HYGVPG+ VDG ++L  ++ GRAV DYVR  GPA+LQ+ TYR  GHSPADPEHERGRK EK WARA  DPI +F+++ L     TQ+E+D V+++                  PA+LAK
Sbjct:  200 QGGWALVAEQLPYAVGGARSILLDRQLGKVG-KDDDRIAIVFVGEGGAQNGRMAECLNAAAKENLPILFVVIDNGRAINTFTPDVAQNSEVFTQGAHYGVPGIKVDGGNLLDTMRTGRAVVDYVRKSGPALLQIHTYRLTGHSPADPEHERGRKAEKKWARAEADPIKLFEASGL----LTQQEMDAVQEQVKKQMNEVMAFAKASPEPPAELAK 409
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BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Match: B8C5Q0_THAPS (E1_dh domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5Q0_THAPS)

HSP 1 Score: 255 bits (651), Expect = 2.900e-81
Identity = 136/227 (59.91%), Postives = 158/227 (69.60%), Query Frame = 1 
Query:    1 QGGWALVAEQIAYAAGAARSILMDRHL-----------DPEGMKDDDRLAIVFLGEGAAQNGRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGVPGVNVDGQDMLQMLKVGRAVTDYVRT-QGPAILQVQTYRFQGHSPADPEHERGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKXXXXXXXXXXXXXXXXXXPADLAK 645
            QGGWALV+EQ+ YAAGAA+SIL+DR L           D     DDDR++IVF+GEG AQNGR AE LN+AAK+ LPLL LVIDNGRAINT+T DVA N +V+QQGKHYGVPG+ VDG D   + K G+AV DYVR+ +GPAILQV TYRF GHSPADPEHERGRKDEK+WARA QDPI  F+      G FT+EEL   KK+                  P +LAK
Sbjct:  111 QGGWALVSEQLPYAAGAAKSILLDRKLAISDNADFEKQDVAPPADDDRISIVFVGEGGAQNGRTAELLNSAAKDNLPLLLLVIDNGRAINTYTGDVATNGSVYQQGKHYGVPGLFVDGYDAADVAKGGKAVIDYVRSGKGPAILQVHTYRFNGHSPADPEHERGRKDEKSWARAEQDPIKKFEDKYTANGMFTEEELKEAKKEVLAEVKAAVKFADDSPMPPVELAK 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18599.4593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK3_ECTSI6.680e-10877.78Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A836C8J1_9STRA6.280e-9173.30Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
R1B9S2_EMIHU1.670e-9067.91Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
A0A482SZZ3_9ARCH3.050e-9073.02Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
A0A7S0VUT6_9CRYP7.110e-9070.16Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1J1I5_GUITC5.410e-8967.44Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
W7TYT3_9STRA1.640e-8766.05Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A0M0JRY3_9EUKA6.140e-8563.72Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
A0A8J6CFX7_DIALT1.300e-8163.26Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
B8C5Q0_THAPS2.900e-8159.91E1_dh domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18599contigH-paniculata_contig18599:513..4992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score340.5
Seed ortholog evalue5.9e-91
Seed eggNOG ortholog2880.D8LEK3
Preferred nameodpA
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0022@1,COG0462@1,KOG0225@2759,KOG0524@2759
Ec32 ortholog descriptionpyruvate dehydrogenase
Ec32 orthologEc-23_002710.1
EC1.2.4.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons5
Model size672
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18599.4593.1prot_H-paniculata_contig18599.4593.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18599 513..4992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929437.0996451-CDS-H-paniculata_contig18599:512..6221622929437.0996451-CDS-H-paniculata_contig18599:512..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 513..622 +
1691480860.8121276-CDS-H-paniculata_contig18599:512..6221691480860.8121276-CDS-H-paniculata_contig18599:512..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 513..622 +
1622929437.1142654-CDS-H-paniculata_contig18599:2460..26321622929437.1142654-CDS-H-paniculata_contig18599:2460..2632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 2461..2632 +
1691480860.8233438-CDS-H-paniculata_contig18599:2460..26321691480860.8233438-CDS-H-paniculata_contig18599:2460..2632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 2461..2632 +
1622929437.12683-CDS-H-paniculata_contig18599:3106..32231622929437.12683-CDS-H-paniculata_contig18599:3106..3223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 3107..3223 +
1691480860.8311987-CDS-H-paniculata_contig18599:3106..32231691480860.8311987-CDS-H-paniculata_contig18599:3106..3223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 3107..3223 +
1622929437.1402967-CDS-H-paniculata_contig18599:3952..40991622929437.1402967-CDS-H-paniculata_contig18599:3952..4099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 3953..4099 +
1691480860.8481097-CDS-H-paniculata_contig18599:3952..40991691480860.8481097-CDS-H-paniculata_contig18599:3952..4099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 3953..4099 +
1622929437.1520061-CDS-H-paniculata_contig18599:4866..49921622929437.1520061-CDS-H-paniculata_contig18599:4866..4992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 4867..4992 +
1691480860.8629763-CDS-H-paniculata_contig18599:4866..49921691480860.8629763-CDS-H-paniculata_contig18599:4866..4992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18599 4867..4992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18599.4593.1

>prot_H-paniculata_contig18599.4593.1 ID=prot_H-paniculata_contig18599.4593.1|Name=mRNA_H-paniculata_contig18599.4593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
QGGWALVAEQIAYAAGAARSILMDRHLDPEGMKDDDRLAIVFLGEGAAQN
GRMAETLNAAAKEKLPLLFLVIDNGRAINTFTPDVAANSNVFQQGKHYGV
PGVNVDGQDMLQMLKVGRAVTDYVRTQGPAILQVQTYRFQGHSPADPEHE
RGRKDEKTWARATQDPIAIFQSAALDAGTFTQEELDGVKKKAAAAVKAAV
AFADSSPPPPADLAKVRWDSVPSS
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mRNA from alignment at H-paniculata_contig18599:513..4992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18599.4593.1 ID=mRNA_H-paniculata_contig18599.4593.1|Name=mRNA_H-paniculata_contig18599.4593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4480bp|location=Sequence derived from alignment at H-paniculata_contig18599:513..4992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGGGTGGGCGTTGGTGGCGGAGCAGATCGCGTATGCTGCGGGCGC
AGCCAGGTCTATCCTCATGGACCGTCATTTAGACCCCGAGGGAATGAAGG
ACGATGACAGGTGCGCGTCGTAGAAACGTTCACGATACTTGATGTTTTTT
GCGAAATACATTTTTTTTTTTTTAGCTCTTCTGAGACTAAAATTCAAGCT
AACTCCGAATGTAGCGCTTTTTGTCATCTCTCACTTATTTCGTGGGTTAC
GTTGAAGATGTGTCGGAGTGCTCGATGATTTCACATGTTGAGGTATAATC
CCCTCCCCCATTAGCCGTTTCGAGACGACGCCCCCATTACCCCCCTTTGA
AGGGGTTTTAAGAGATATTACATATATATTACATCAGGGGACAAGCTTAT
TCTAAAACTCAGGCGTATACTTTCAGTTTTTTGTGAAAATTATTTGCAAT
TTTTTGTATTTATTTGTCCGGGAGGTCTTATCTTTCCGATAATGATGATG
CGCGGCGTTTGGGCCCACACGCGGGAGGAACGGAAAAATGTTGACCCGAG
AAACTGGTCACTGCGGAAAATTCAATTTTGCTCGTTGGTTTTTTTCCGGG
AAATTTCGAATTGGTGTTTCGAAAATCTTGATATTGTTGTTATTTTGGGG
GGGGGGGCTCTTGAAAGTTCGAATTTTGCAAAAAGACAAACACACACACA
CAGAGAGATTACGAATCCTCGGTAACAAGTAAAGAACAATTGTAGATGTA
CTTTTTTTTTTTCTTTTTTTTTTGGAGCGCTGCAAGTATAGAGGCACGAG
GAACGCAATTTGAATTTTACCTCCGATTCCAGCCGAAGTCTGTAGGGTGT
TTGTTGCTACGATGGTGATGATGATGATACTCAGGCGAATATACTTTTTT
TTTTTTTTTTTCGTGGCGAAGTCGCTGATTATTCGTAGTTTTCCGGGGGG
TGAAATTTTTACATCCCGGATAAAAGAGCAGGAAATGCCTACCTATATTG
TAATATCCCCAAATCAAACTTGATAATTTGGTGACCTGTAAACCGTCATG
ATTATATTTCGGACTCCGTAAAAATCTGACCTTCGGACCTTGATCGAATT
GTCGGATTTCGTTATTAGCCCACGTTTGGACCTTGATCTCCACTGGGGAT
GAAGGTCGATGAAGCCTAGCATCATCATGCGAGGTCCGCCCTAATAGCAT
TGCTATGTGTGCGACAGGAGATGTCGTTGGTGCGGCAAGAGTAGAATCTG
ACGATCAAAGTAAAGAAAAGTACACTGTAAGCCATGCTGGCATCCATGAA
TTAGAGTAGCGTTTCGCTAATGGGGTGGGTTTTGAGAAAGCATGGTGGTG
GGTTATCACATACCTTGACGTTGTATTTTGTGAGCAAATGTAACGTGATG
TGATGAGATCGGATATGATGAAATGAAACCTCTTTGATTTGGAAAATGAT
GAGAATTTCGGTGGGACGGCAGCAAAGGAGTTGTTTGTCATGGTCTAGAG
AGCTAGCTGTCCTGTAGGTCCGTGTTATCAACTTCGCTACCGCTGTTGAC
TGTGGTGGGTTTAAAGTATATCGTGTTTTTCATGTTTGACGATGGATAAG
ATGATAAGGATACGGTAATAAAATTATTGATTCGGTTATTGTCATGTTGC
GTGCTGTCTTGATTGAAACTCTACAATAAATCCATTGTGAATTGTAGGCA
GGCCGCGGCAACGCCAAACAAGGTGTACCTTATTTAGACAGGTCCCTCCC
GAAACCGCCACCACTACATTCAGTTGACGTATTTATTATATGCAGAGATT
GTATGAAACTCATATAGGGAAGATATGCGAGGAATGAAAACGGAAGATGT
CGAGCAAAACCTCGATGACAAGTATCGAAGAGAAGGTCATGTTTTGGCTG
TCTGTTTTGATATTTATGAGTTCTATCGTTCATTTATTTATTATGTAGAT
TGGCGATCGTGTTCCTTGGGGAGGGGGCAGCACAAAACGGGCGTATGGCG
GAGACTCTCAACGCCGCAGCAAAGGAGAAACTTCCGCTCCTATTTCTCGT
CATCGACAACGGCCGTGCCATCAATACCTTCACCCCTGACGTCGCGGCAA
ACTCGAACGTCTTCCAGCAGGTATCTGTCTGTGTCTATGTGTCTATGTGT
CTTATGTGTCTATGTGTCTATGTGTCTATGTGTCTATGTGTCTATGTGTC
TGTGTCTGTTCACTCGAACCAATCACTAATCGCTGTGTTTGAAATTCCTC
CAGAAAGTTGCGGCCCGTCCTCCAAAAGCAAGATCGGTCGATAGGCAATG
AATTCCCTTTGTTTTAACCCCCCTGGTCATTGTTCCGTTGAGTATAGGCT
GCCATTGTTCCGTTGAGTTATTGAGGAAAAAAAAAAAAAAAAAGTTTGCA
GAAGGCGCCGAACTCTTCGGTATAGAGCCCGCACAAATCAAGTCGCTTGT
TTTTTGTTTTGTTTTTTTTGCCGGGGAAACCCAGCGCTGATCACTGGGTG
AACGTAGAGCGTTGTTGCCAATAATCTTAACTGCTTTAGACTCGCAAAGC
ATGACCTCATTTACGCCGCCGCCCCAAATCCTACCCCTTCTTAGGGGAAG
CACTATGGCGTACCCGGAGTGAACGTGGATGGGCAGGACATGCTCCAGAT
GCTTAAAGTGGGACGCGCGGTCACTGATTACGTGCGCACGCAGGGCCCCG
CTATCCTTCAGGTACTACCATCGTGTACATGGACACTACTTGTACGAGAT
ACCGGGAAACCATACCCCGGGGTTACAGTACTGCAGTAGGATTGCAAGCT
GAACTCATGACAGCCACGTTAAGATATGGGACATAGGATATAGATAGATA
TATAGATCGGTGTAGGTGTAGATATATTGATAGATATATAGATAGATATA
TAGATATTTACCGACAACTCTGTAGTCGAGATTAGCGAATATTGCTGTAA
ATGACCCTGAAGGTGCTCTAGAAGTATCGAAATACATTGAACATAATTTT
TCGGGCGTAGGAACGGCGAAAAAGGAAAGAGCTGTGATGAGGAGATGCCT
GGATACATCCTCTGGTTCTTTTCTAGGGTGTTGCGTTTTTCTCAACAATC
AATATCTTGACGGTCCACCGGTAGTGGCCAAGCTTCAACTGACAATTTTT
TGGAACGAACCTTGACCCGAATACTCGAGAAGTCGTATTTATCCGGGTCT
GTGTGGAACCTGCTCTCTAGCATCGCTAGGCAAAAAAACATGTAAGGCGT
TCGGGGGAGGGGGTATTCATCCAAAAAAATTGCAAATAATTCCGAGTGAT
GCACCTGGGTTATGAGTAACTCTTTTCCCGAATCTTTAGTTCTCATATTG
TGGAACAATTTTTTTTTTTATAAGATGCCCGATTCCAAGAGATTTAAAGT
ACAACACGTGCAAAAAAAACGTATGCTCTGGTTTTTGCAGGTCCAGACAT
ATCGATTCCAAGGGCACTCGCCGGCTGATCCCGAGCACGAGCGAGGGCGG
AAGGATGAAAAGACGTGGGCCAGGGCTACGCAGGACCCTATCGCTATTTT
CCAGAGCGCGGCGCTGGACGCCGGTACCTTCACTCAGGTACGGGATGGGG
ACGCGGGGGGGATTACCCGTTGTAACCATGTTGGGGATGTGAGACTGACT
GACTTGAAATTTGAGTTGTGCACATAGTATCAACAAAAGTAGAATACTAG
AGGGGGTACTCGTGTTCATTACATGCGTCAAATGCCGAACCGTTTCGCCC
AATTTGTTGAGCTCGTTCTCGCCAGATCCTTTTTTCGCGAATGGAAATGA
CCGTTGAAAAAGGCGTTAGAATAGTTGAAATGTGGTTTTCACTTGATATT
GTTGATATTCGTTCCGTTGAGACTGTGGTATTGTGCAGTAAGTATTACGT
TTGTTTTTAGTTTAATTAAATAGTTGGGCTGTTGTTCCTTTTGGTGAATG
GCAAGTTATCGCGGACCTTCATTTAGGTATCTTATATTCGTTGGCTGTTT
CTTCGTTAGGCGTTTATGGTGTTTTGATTTCGGCTTGGTCAAGTAATTCA
AAATATGCGTTTTTAGGGGGTTTACGTTCTGCCGCCCAAGTGGTGTTTTA
TGAAATTCCTATGGGTTTTATACGTCGATGTTAAGGCTGTACTTTTTGAT
GATCGCTTGGGGTATAGAGTCCTCCGGCGCCCAAATCGTTACTATCGTAG
CTTCGTTAACACTTTCAACGACGTGTCGTTTTTTTTTAGCCATATTATTG
CTGCTTTTTTTTTTTTTTTTCATCATCTTGTGGAGGTTTTGCGTTGTTGT
CGTTGACCCCCCAAGTCCTGATTTTTGTTTTTCTTGTCTTGTTGTTTAAT
GCAGGAGGAGCTTGATGGGGTAAAGAAAAAGGCTGCTGCCGCCGTAAAAG
CTGCCGTAGCATTTGCCGACTCCTCTCCACCCCCTCCCGCCGATCTGGCT
AAGGTGAGGTGGGATTCTGTCCCGTCGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig18599:513..4992+

>mRNA_H-paniculata_contig18599.4593.1 ID=mRNA_H-paniculata_contig18599.4593.1|Name=mRNA_H-paniculata_contig18599.4593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig18599:513..4992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAGGGTGGGCGTTGGTGGCGGAGCAGATCGCGTATGCTGCGGGCGC
AGCCAGGTCTATCCTCATGGACCGTCATTTAGACCCCGAGGGAATGAAGG
ACGATGACAGCAGGGAGGGTGGGCGTTGGTGGCGGAGCAGATCGCGTATG
CTGCGGGCGCAGCCAGGTCTATCCTCATGGACCGTCATTTAGACCCCGAG
GGAATGAAGGACGATGACAGATTGGCGATCGTGTTCCTTGGGGAGGGGGC
AGCACAAAACGGGCGTATGGCGGAGACTCTCAACGCCGCAGCAAAGGAGA
AACTTCCGCTCCTATTTCTCGTCATCGACAACGGCCGTGCCATCAATACC
TTCACCCCTGACGTCGCGGCAAACTCGAACGTCTTCCAGCAGATTGGCGA
TCGTGTTCCTTGGGGAGGGGGCAGCACAAAACGGGCGTATGGCGGAGACT
CTCAACGCCGCAGCAAAGGAGAAACTTCCGCTCCTATTTCTCGTCATCGA
CAACGGCCGTGCCATCAATACCTTCACCCCTGACGTCGCGGCAAACTCGA
ACGTCTTCCAGCAGGGGAAGCACTATGGCGTACCCGGAGTGAACGTGGAT
GGGCAGGACATGCTCCAGATGCTTAAAGTGGGACGCGCGGTCACTGATTA
CGTGCGCACGCAGGGCCCCGCTATCCTTCAGGGGAAGCACTATGGCGTAC
CCGGAGTGAACGTGGATGGGCAGGACATGCTCCAGATGCTTAAAGTGGGA
CGCGCGGTCACTGATTACGTGCGCACGCAGGGCCCCGCTATCCTTCAGGT
CCAGACATATCGATTCCAAGGGCACTCGCCGGCTGATCCCGAGCACGAGC
GAGGGCGGAAGGATGAAAAGACGTGGGCCAGGGCTACGCAGGACCCTATC
GCTATTTTCCAGAGCGCGGCGCTGGACGCCGGTACCTTCACTCAGGTCCA
GACATATCGATTCCAAGGGCACTCGCCGGCTGATCCCGAGCACGAGCGAG
GGCGGAAGGATGAAAAGACGTGGGCCAGGGCTACGCAGGACCCTATCGCT
ATTTTCCAGAGCGCGGCGCTGGACGCCGGTACCTTCACTCAGGAGGAGCT
TGATGGGGTAAAGAAAAAGGCTGCTGCCGCCGTAAAAGCTGCCGTAGCAT
TTGCCGACTCCTCTCCACCCCCTCCCGCCGATCTGGCTAAGGTGAGGTGG
GATTCTGTCCCGTCGTCGGAGGAGCTTGATGGGGTAAAGAAAAAGGCTGC
TGCCGCCGTAAAAGCTGCCGTAGCATTTGCCGACTCCTCTCCACCCCCTC
CCGCCGATCTGGCTAAGGTGAGGTGGGATTCTGTCCCGTCGTCG
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