mRNA_H-paniculata_contig18578.4586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18578.4586.1
Unique NamemRNA_H-paniculata_contig18578.4586.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: D8LKX2_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX2_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.120e-41
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1 
Query:   25 VIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            VIENQKTRAQNFDDETDM+DAFVACGGR DK+GHVKR ALVKIIK DFGLTI+IEDLINKID+DGSGEIEF EFKALLS
Sbjct:   98 VIENQKTRAQNFDDETDMIDAFVACGGRMDKTGHVKRGALVKIIKVDFGLTINIEDLINKIDADGSGEIEFPEFKALLS 176
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A835Z187_9STRA (EF hand-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z187_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.480e-40
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:   25 VIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            VIENQK RA++FDDETDM+DAFVACGG ++KSGHVKRD LVKIIKQDFGLTIDIEDLIN+ID DGSGEIEFEEFK LLS
Sbjct:   70 VIENQKMRAESFDDETDMIDAFVACGGLANKSGHVKRDTLVKIIKQDFGLTIDIEDLINRIDVDGSGEIEFEEFKTLLS 148
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A7S1XYK3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.780e-39
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:   10 ATVAQVIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            A   +VIENQK RA+NFDDETDM+DAFVACGGR DK G+VKR+ LVKIIKQDFGLTIDIE+LINKID+DGSGEIEFEEF+ LLS
Sbjct:  112 AEFLKVIENQKDRAENFDDETDMIDAFVACGGRPDKEGNVKRETLVKIIKQDFGLTIDIEELINKIDTDGSGEIEFEEFRTLLS 195
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A812KW91_SYMMI (Calmodulin n=6 Tax=cellular organisms TaxID=131567 RepID=A0A812KW91_SYMMI)

HSP 1 Score: 136 bits (343), Expect = 1.820e-39
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:   10 ATVAQVIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            A   +VIENQK RA+NFDDE+DM+DAFVACGG  DKSGHVKR+ LV+IIK DFGLTIDIE+LINKID+DGSGEIEFEEFK LLS
Sbjct:   65 AEFLKVIENQKERAENFDDESDMIDAFVACGGLQDKSGHVKRETLVRIIKHDFGLTIDIEELINKIDTDGSGEIEFEEFKTLLS 148
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A7S4JWG6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JWG6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.000e-38
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:   25 VIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            V+E QK RA+N DDETDM+DAFVACGG++DK GHVKRD L+KIIK DFGLTIDIE+LINKID+DGSG+IEFEEFK LLS
Sbjct:   21 VVEGQKQRAENVDDETDMIDAFVACGGQADKGGHVKRDTLIKIIKHDFGLTIDIEELINKIDTDGSGQIEFEEFKILLS 99
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A7S2GY36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GY36_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.490e-38
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:   25 VIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            VIENQK+RA++FDDE DM+DAFVACGG++DK+GHVKRD LVKIIK DFGLTIDIEDLINKID+DGSG+IEF+EF  LLS
Sbjct:   70 VIENQKSRAESFDDENDMIDAFVACGGKADKTGHVKRDTLVKIIKTDFGLTIDIEDLINKIDTDGSGKIEFDEFMTLLS 148
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A8J2SH02_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH02_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.190e-37
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:   10 ATVAQVIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            A   +VIENQK RA+NFDDE DM+DAFVACGG  DK GHV+R+ LVKIIK DFGLTIDIE+LINKID+D SGEIEFEEFKALLS
Sbjct:  123 AEFLKVIENQKERAENFDDENDMIDAFVACGGEPDKGGHVRRETLVKIIKHDFGLTIDIEELINKIDTDLSGEIEFEEFKALLS 206
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A6U3V7I8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V7I8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.070e-37
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:   25 VIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            V+E+QK RA+NFDDE DM+DAFVACGG  D+SGHVKR+ L+KIIK DFGL IDIE+LINKID+DGSGEIEFEEFK LLS
Sbjct:   70 VVESQKRRAENFDDENDMIDAFVACGGMPDRSGHVKRETLIKIIKHDFGLMIDIEELINKIDTDGSGEIEFEEFKILLS 148
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BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A812ZLM1_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZLM1_SYMMI)

HSP 1 Score: 127 bits (320), Expect = 6.410e-36
Identity = 59/79 (74.68%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:   25 VIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            VIENQK RA++FDDE+DM+DA+VACGG+ DKSGHV RD L++IIKQDFGL I+IE+LINK+D+DGSGEIEF+EFK LL+
Sbjct:   74 VIENQKERAESFDDESDMIDAYVACGGQPDKSGHVARDTLIRIIKQDFGLPINIEELINKVDTDGSGEIEFDEFKTLLT 152
[Close]
BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Match: A0A7S1CKF1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKF1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.420e-35
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   25 VIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVKIIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS 261
            VIE QK RA  FDDE+DM+DAFVACGG++DK GHV RD LVKIIK DFGLTIDIE LIN+ID+DGSGEIE+EEFK+LLS
Sbjct:  114 VIEKQKERAAKFDDESDMIDAFVACGGKADKEGHVHRDTLVKIIKHDFGLTIDIEQLINEIDADGSGEIEYEEFKSLLS 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18578.4586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKX2_ECTSI3.120e-4189.87Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z187_9STRA4.480e-4086.08EF hand-containing protein n=1 Tax=Tribonema minus... [more]
A0A7S1XYK3_9STRA1.780e-3980.95Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A812KW91_SYMMI1.820e-3979.76Calmodulin n=6 Tax=cellular organisms TaxID=131567... [more]
A0A7S4JWG6_9STRA1.000e-3879.75Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2GY36_9STRA1.490e-3881.01Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SH02_9STRA3.190e-3778.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U3V7I8_9STRA5.070e-3778.48Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A812ZLM1_SYMMI6.410e-3674.68Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
A0A7S1CKF1_9STRA1.420e-3578.48Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18578contigH-paniculata_contig18578:3069..3641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D8LKX2
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons2
Model size264
Cds size264
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929436.3907797-CDS-H-paniculata_contig18578:3068..32021622929436.3907797-CDS-H-paniculata_contig18578:3068..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18578 3069..3202 +
1691480860.4835877-CDS-H-paniculata_contig18578:3068..32021691480860.4835877-CDS-H-paniculata_contig18578:3068..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18578 3069..3202 +
1622929436.4097636-CDS-H-paniculata_contig18578:3511..36411622929436.4097636-CDS-H-paniculata_contig18578:3511..3641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18578 3512..3641 +
1691480860.493085-CDS-H-paniculata_contig18578:3511..36411691480860.493085-CDS-H-paniculata_contig18578:3511..3641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18578 3512..3641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18578.4586.1prot_H-paniculata_contig18578.4586.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18578 3069..3641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18578.4586.1

>prot_H-paniculata_contig18578.4586.1 ID=prot_H-paniculata_contig18578.4586.1|Name=mRNA_H-paniculata_contig18578.4586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MSCATVAQVIENQKTRAQNFDDETDMVDAFVACGGRSDKSGHVKRDALVK
IIKQDFGLTIDIEDLINKIDSDGSGEIEFEEFKALLS*
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mRNA from alignment at H-paniculata_contig18578:3069..3641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18578.4586.1 ID=mRNA_H-paniculata_contig18578.4586.1|Name=mRNA_H-paniculata_contig18578.4586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at H-paniculata_contig18578:3069..3641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTGTGCAACGGTTGCTCAGGTAATCGAGAACCAAAAGACGAGGGC
ACAGAACTTTGACGATGAAACAGACATGGTCGACGCTTTCGTCGCCTGTG
GGGGTCGCTCCGACAAGTCTGGGCATGTGAAGAGGTCAGCGGATGTTGCA
TGCTGTGCTACTGTAATATGTAGTAGTCCATATTCAAACGTTCGCACTAG
AAATAGTGGAATCGTGTTGGTGTATTTGTAGGGTAGCTCTTCTCTTTTTT
CGATTGCGGTCAACAACCGTAACTTCTCGCGTTTCACCAATTGCCATAGG
TTGCAAATCTCCATGCAAACTGGTTTGACCCTCAATGGCATATCTGCTCC
GTTGATTGAAGCATAGTTGACCTCAGAAGGCGTTACTGATATTTTCTGCT
ATTGCGTCTGGTGCTCATCGGGTTTTTTTTCTCCATGTGCAAGGGATGCC
TTGGTGAAGATAATCAAGCAGGACTTTGGGCTGACGATAGACATCGAGGA
CTTGATCAACAAGATTGACTCGGACGGGTCGGGAGAGATTGAATTTGAAG
AATTCAAGGCACTGTTGTCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18578:3069..3641+

>mRNA_H-paniculata_contig18578.4586.1 ID=mRNA_H-paniculata_contig18578.4586.1|Name=mRNA_H-paniculata_contig18578.4586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig18578:3069..3641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTGTGCAACGGTTGCTCAGGTAATCGAGAACCAAAAGACGAGGGC
ACAGAACTTTGACGATGAAACAGACATGGTCGACGCTTTCGTCGCCTGTG
GGGGTCGCTCCGACAAGTCTGGGCATGTGAAGAGATGTCGTGTGCAACGG
TTGCTCAGGTAATCGAGAACCAAAAGACGAGGGCACAGAACTTTGACGAT
GAAACAGACATGGTCGACGCTTTCGTCGCCTGTGGGGGTCGCTCCGACAA
GTCTGGGCATGTGAAGAGGGATGCCTTGGTGAAGATAATCAAGCAGGACT
TTGGGCTGACGATAGACATCGAGGACTTGATCAACAAGATTGACTCGGAC
GGGTCGGGAGAGATTGAATTTGAAGAATTCAAGGCACTGTTGTCATAGGG
ATGCCTTGGTGAAGATAATCAAGCAGGACTTTGGGCTGACGATAGACATC
GAGGACTTGATCAACAAGATTGACTCGGACGGGTCGGGAGAGATTGAATT
TGAAGAATTCAAGGCACTGTTGTCATAG
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