mRNA_H-paniculata_contig18576.4584.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18576.4584.1
Unique NamemRNA_H-paniculata_contig18576.4584.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18576.4584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18576contigH-paniculata_contig18576:3030..4101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929436.2857082-CDS-H-paniculata_contig18576:3029..31011622929436.2857082-CDS-H-paniculata_contig18576:3029..3101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18576 3030..3101 +
1691480860.4595451-CDS-H-paniculata_contig18576:3029..31011691480860.4595451-CDS-H-paniculata_contig18576:3029..3101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18576 3030..3101 +
1622929436.2981136-CDS-H-paniculata_contig18576:3864..41011622929436.2981136-CDS-H-paniculata_contig18576:3864..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18576 3865..4101 +
1691480860.4672616-CDS-H-paniculata_contig18576:3864..41011691480860.4672616-CDS-H-paniculata_contig18576:3864..4101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18576 3865..4101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18576.4584.1prot_H-paniculata_contig18576.4584.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18576 3030..4101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18576.4584.1

>prot_H-paniculata_contig18576.4584.1 ID=prot_H-paniculata_contig18576.4584.1|Name=mRNA_H-paniculata_contig18576.4584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
GDGNRGGVAKSERINTITTTLQEEERKCVVTDHYVMGDLLGEGGYGTVHM
ATRKASPATKREKLSGGEHAARINSMRSRVFVEARSCDLEEEAASAIGMN
TLR
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mRNA from alignment at H-paniculata_contig18576:3030..4101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18576.4584.1 ID=mRNA_H-paniculata_contig18576.4584.1|Name=mRNA_H-paniculata_contig18576.4584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-paniculata_contig18576:3030..4101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATGGGAATCGAGGTGGTGTCGCGAAAAGTGAAAGAATAAACACGAT
CACGACGACTCTACAAGAGGAGGTGATGTAACGGGCGAACAACACACATA
TTTAGTAGAGCTACGTTGGGGATAGGAAATACTAAATACTGGGAACATTT
ACAATATAAAACTGGAGGTTTGACACGTACTGGAGTTGAACCATATTGCA
ATCGACACATACTGGAGTTGACACATACTGGCGTACGAAAATATTTATGA
AAACACGTCGTTTGTGCCAACGCTACAGGCAGGGTGTCATGAACACTCAA
CAAAGTAAGCATGCGCTTAAGAGTGACAGATTACGGAGTTTGACACACGC
TAGAGCATCACTGGCTCCAGTTCCAATGGAAGATGCTGTCGCGGAAATGC
TTGGCGTTTATCCCACGCCAAGCGAGGACGTTTATTTACATATATCGGGC
AGCGGGGTGCTCGATGTTGTGGGAGGTGGGGTGGGGTCATGGTTATGTGG
AACAAAAAACTCGTAAGGTTAACATCTACTATAATACCTGCAGCTATTGC
TAAGGTAAGGCTATGTGGAGAACTTGAGATTACTGAACTCCTGCGTCTGA
TTCACGTTTCTAATTTCAATATTCGACAACCCCTGTCCAGTGCCTCCCCC
CCCCCCTACCCACGGAAAGTCACTTGTTCTGTTGACCGGGAATTGTCCAT
GCGTGTATTGCTTGCTGCTGCTCCTGCTGTGGTGTATTCGTCTTACTATG
TTACTATTGTTTGGGGGGGTGACATGCGCTTTGTTCAACAACAACCAATC
TTGGCCTCGACAACGACTCATCGGCCAAAACAAAGGAACGAAAGTGTGTC
GTCACAGACCACTATGTCATGGGAGATCTACTGGGAGAGGGTGGCTACGG
AACCGTGCACATGGCCACGCGAAAAGCATCCCCTGCTACCAAACGGGAAA
AACTAAGCGGCGGCGAGCATGCAGCTCGAATTAATTCAATGCGCAGTAGA
GTCTTCGTAGAAGCAAGGTCATGTGATCTAGAGGAGGAAGCTGCATCGGC
GATTGGGATGAACACATTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18576:3030..4101+

>mRNA_H-paniculata_contig18576.4584.1 ID=mRNA_H-paniculata_contig18576.4584.1|Name=mRNA_H-paniculata_contig18576.4584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig18576:3030..4101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATGGGAATCGAGGTGGTGTCGCGAAAAGTGAAAGAATAAACACGAT
CACGACGACTCTACAAGAGGAGGGGGATGGGAATCGAGGTGGTGTCGCGA
AAAGTGAAAGAATAAACACGATCACGACGACTCTACAAGAGGAGGAACGA
AAGTGTGTCGTCACAGACCACTATGTCATGGGAGATCTACTGGGAGAGGG
TGGCTACGGAACCGTGCACATGGCCACGCGAAAAGCATCCCCTGCTACCA
AACGGGAAAAACTAAGCGGCGGCGAGCATGCAGCTCGAATTAATTCAATG
CGCAGTAGAGTCTTCGTAGAAGCAAGGTCATGTGATCTAGAGGAGGAAGC
TGCATCGGCGATTGGGATGAACACATTGAGGGAACGAAAGTGTGTCGTCA
CAGACCACTATGTCATGGGAGATCTACTGGGAGAGGGTGGCTACGGAACC
GTGCACATGGCCACGCGAAAAGCATCCCCTGCTACCAAACGGGAAAAACT
AAGCGGCGGCGAGCATGCAGCTCGAATTAATTCAATGCGCAGTAGAGTCT
TCGTAGAAGCAAGGTCATGTGATCTAGAGGAGGAAGCTGCATCGGCGATT
GGGATGAACACATTGAGG
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