mRNA_H-paniculata_contig1857.4583.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1857.4583.1
Unique NamemRNA_H-paniculata_contig1857.4583.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1857.4583.1 vs. uniprot
Match: D8LFT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT4_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.560e-35
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:   13 TGICFNCGSGKHALRVCPKPKKTDGSLPHATCFVCKAKGHISAHCKQNANGIYPKGGFCK 192
            TGICFNCGS KHALRVCP PK+ DGSLP+ATCF+CKAKGHISAHCKQNANG+YPKGGFCK
Sbjct:  119 TGICFNCGSAKHALRVCPAPKQKDGSLPYATCFICKAKGHISAHCKQNANGVYPKGGFCK 178
[Close]
BLAST of mRNA_H-paniculata_contig1857.4583.1 vs. uniprot
Match: A0A0G4HJ28_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HJ28_9ALVE)

HSP 1 Score: 96.7 bits (239), Expect = 1.800e-22
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   13 TGICFNCGSGKHALRVCPKPKKTDGSLPHATCFVCKAKGHISAHCKQNANGIYPKGGFCK 192
            TGIC+NCGS  H+L+ CP+P+K DGSLP A CFVCK  GHI + C QN +G+YP+GG C+
Sbjct:  152 TGICYNCGSKAHSLKACPEPRKPDGSLPFALCFVCKQMGHIVSKCPQNTSGVYPEGGECR 211
[Close]
BLAST of mRNA_H-paniculata_contig1857.4583.1 vs. uniprot
Match: A0A0C2XNF4_9AGAM (Uncharacterized protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2XNF4_9AGAM)

HSP 1 Score: 80.9 bits (198), Expect = 5.520e-17
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    4 QSNTGICFNCGSGKHALRVCPKPKKTDGSLPHATCFVCKAKGHISAHCKQNANGIYPKGG 183
            ++  GIC+ CGS  H L  C KP+   GSLP A+CFVCK  GH+++ C QN  G+YP GG
Sbjct:  113 KAGIGICYRCGSSNHTLSKCRKPRDEAGSLPFASCFVCKGTGHLASTCPQNEKGVYPNGG 172
[Close]
BLAST of mRNA_H-paniculata_contig1857.4583.1 vs. uniprot
Match: A0A1Y2CGT7_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CGT7_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 1.190e-14
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   16 GICFNCGSGKHALRVCPKPKKTDGSLPHATCFVCKAKGHISAHCKQNANGIYPKGGFCK 192
            GIC+ CGS +H    C K   +D   P A+CFVCKA GH+++ C +N  G+YP GG CK
Sbjct:  186 GICYRCGSTEHKSSQCKKKLNSDNPFPFASCFVCKATGHLASACPKNDKGMYPNGGSCK 244
[Close]
BLAST of mRNA_H-paniculata_contig1857.4583.1 vs. uniprot
Match: A0D3A0_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0D3A0_PARTE)

HSP 1 Score: 74.3 bits (181), Expect = 1.400e-14
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   19 ICFNCGSGKHALRVCPKPKKTDGSLPHATCFVCKAKGHISAHCKQNANGIYPKGG 183
            IC+NCGS KH L+ C KPK   GSL  ATCFVCK  GHIS  C +N  G+Y  GG
Sbjct:  153 ICYNCGSQKHTLKDCQKPKS--GSLKFATCFVCKEAGHISRDCPKNPKGLYAYGG 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1857.4583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFT4_ECTSI5.560e-3588.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4HJ28_9ALVE1.800e-2261.67Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0C2XNF4_9AGAM5.520e-1751.67Uncharacterized protein n=1 Tax=Serendipita vermif... [more]
A0A1Y2CGT7_9FUNG1.190e-1449.15Uncharacterized protein n=1 Tax=Rhizoclosmatium gl... [more]
A0D3A0_PARTE1.400e-1460.00Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1857contigH-paniculata_contig1857:22459..22650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue4.6e-28
Seed eggNOG ortholog2880.D8LFT4
Preferred nameZCCHC9
KEGG koko:K05765,ko:K17578
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009892,GO:0010563,GO:0010921,GO:0010923,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0035303,GO:0035305,GO:0043086,GO:0044092,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009
EggNOG free text desc.zinc ion binding
EggNOG OGsCOG5082@1,KOG4400@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131,ko04147,ko04812
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929436.2412486-CDS-H-paniculata_contig1857:22458..226501622929436.2412486-CDS-H-paniculata_contig1857:22458..22650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1857 22459..22650 +
1691480860.4501398-CDS-H-paniculata_contig1857:22458..226501691480860.4501398-CDS-H-paniculata_contig1857:22458..22650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1857 22459..22650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1857.4583.1prot_H-paniculata_contig1857.4583.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1857 22459..22650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1857.4583.1

>prot_H-paniculata_contig1857.4583.1 ID=prot_H-paniculata_contig1857.4583.1|Name=mRNA_H-paniculata_contig1857.4583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MQSNTGICFNCGSGKHALRVCPKPKKTDGSLPHATCFVCKAKGHISAHCK
QNANGIYPKGGFCK
back to top

mRNA from alignment at H-paniculata_contig1857:22459..22650+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1857.4583.1 ID=mRNA_H-paniculata_contig1857.4583.1|Name=mRNA_H-paniculata_contig1857.4583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig1857:22459..22650+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTCCAACACCGGCATATGCTTCAACTGTGGCTCCGGTAAGCACGC
CCTCAGGGTGTGCCCTAAACCTAAGAAGACCGACGGAAGCCTGCCTCACG
CGACCTGCTTCGTGTGCAAGGCGAAAGGGCACATCAGTGCCCATTGCAAG
CAGAACGCAAACGGCATCTATCCGAAGGGTGGTTTCTGCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1857:22459..22650+

>mRNA_H-paniculata_contig1857.4583.1 ID=mRNA_H-paniculata_contig1857.4583.1|Name=mRNA_H-paniculata_contig1857.4583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig1857:22459..22650+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTCCAACACCGGCATATGCTTCAACTGTGGCTCCGGTAAGCACGC
CCTCAGGGTGTGCCCTAAACCTAAGAAGACCGACGGAAGCCTGCCTCACG
CGACCTGCTTCGTGTGCAAGGCGAAAGGGCACATCAGTGCCCATTGCAAG
CAGAACGCAAACGGCATCTATCCGAAGGGTGGTTTCTGCAAGATGCAGTC
CAACACCGGCATATGCTTCAACTGTGGCTCCGGTAAGCACGCCCTCAGGG
TGTGCCCTAAACCTAAGAAGACCGACGGAAGCCTGCCTCACGCGACCTGC
TTCGTGTGCAAGGCGAAAGGGCACATCAGTGCCCATTGCAAGCAGAACGC
AAACGGCATCTATCCGAAGGGTGGTTTCTGCAAG
back to top