prot_H-paniculata_contig1857.4582.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1857.4582.1
Unique Nameprot_H-paniculata_contig1857.4582.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length258
Homology
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: D8LFT3_ECTSI (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT3_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 5.790e-61
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = 0
Query:    1 MKKALLVLKGKELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVTTGTS-LSAEKLLKIAEGLDKPPDK 157
            ++KAL++L GKE KL  A +AL +HQ+LH EVE+LR EVR GE+QVQ+CA +LT A+A L GPL+ AK+LLEAGRKAE  EI V D+VDYAQRISG+TSAP+YWKPGMAMVGFAPPAPRPEMMRAGALSAFAV+ GTS LS  +LL +A  LD+PPD+
Sbjct:   42 IRKALVLLNGKEAKLTKASEALREHQQLHAEVESLRQEVRYGEQQVQDCARKLTEADAALRGPLRDAKRLLEAGRKAEAAEIDVRDIVDYAQRISGITSAPAYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVSPGTSSLSLPELLTLARDLDRPPDQ 199          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: A0A835YUZ4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.950e-15
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0
Query:   49 CANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 129
            C   +  A A L   L++A++ L    KA    + V+D+V YAQRISG TSAP+YWKPGM MVGF PPAP PEMMR GAL+
Sbjct:   59 CVAAIAGASADLRHALESARKSLGEFDKACAAGVAVSDIVAYAQRISGTTSAPAYWKPGMPMVGFLPPAPLPEMMRMGALT 139          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: A0A7S3UVI8_HETAK (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI8_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 2.210e-12
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0
Query:   47 QECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFA 132
            ++ A+ L+  E  L   L+  K +++A R A    + +  +V YAQRI G T+AP YWKPGM MVGF PPAP PE +RAG+  A+A
Sbjct:   78 RDLASALSSKEKDLRIALRKVKPVVDAARLANANPVSLKGLVAYAQRIGGTTAAPPYWKPGMPMVGFIPPAPLPEQIRAGSFHAYA 163          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: A0A8K1CAS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAS9_PYTOL)

HSP 1 Score: 73.6 bits (179), Expect = 1.990e-11
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0
Query:   11 KELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVTTGTSLSAE 142
            K+  L SA   L QHQ    E+ A++ E+   +++V   A +L +++  ++  LK  +++L+  R+ +   +   DVV YA RI+G TSAP  W+PG  M GF PPAP+ +MMRAG LS   V    +L  E
Sbjct:   54 KDRDLLSAVKTLVQHQVAQKELLAVQDEIHEKKQKVVRYAAQLRQSQEDIALVLKKHRRVLDHARQKQKVLLDPRDVVAYAHRIAGTTSAPKEWRPGFPMFGFMPPAPQEQMMRAGVLSRGVVDEVVTLEPE 185          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: A0A024TZF4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZF4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.540e-11
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 0
Query:    5 LLVLKGKELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYV--ADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 129
            L+V K K+L   +    L QHQ    E++AL+A++   E+++   A  L   + +++  L   ++ LE   +    ++ +   +VV YA +I+G TSAP  WKP   M GF PPAP PEMMRAG LS
Sbjct:   49 LVVAKDKQL--LNTVKQLNQHQSAQKELDALKAQIADKEQKIVRYAKELRSGQQSIASALAKHRRTLEQCHQDSSSKVVLDPLEVVAYAHKIAGSTSAPPNWKPEYPMFGFVPPAPTPEMMRAGVLS 173          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: A0A0P1AJW5_PLAHL (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJW5_PLAHL)

HSP 1 Score: 69.7 bits (169), Expect = 4.080e-10
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   22 LAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 129
            LA+HQ    E+  + AE++  E++V + A +L +++  ++  LK  + +L+  ++    ++   +V+ YA RI+G TSAP  W+PG  M GF PPAP+  MMRAG LS
Sbjct:   67 LARHQVTQKELLRIEAEIKGKEQKVIQYAAQLRQSQENIANVLKKHQVVLQNAKRQVQVKLDPRNVIAYAHRIAGTTSAPKEWQPGFPMFGFMPPAPQEHMMRAGVLS 174          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: D0NRG4_PHYIT (Mediator of RNA polymerase II transcription subunit 4 n=24 Tax=Phytophthora TaxID=4783 RepID=D0NRG4_PHYIT)

HSP 1 Score: 69.7 bits (169), Expect = 4.140e-10
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 0
Query:   11 KELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVTTGTSLSAEKLLKIAEGLDKPPDKAALDDTN 164
            K+  L +A   LA+HQ    E+  + AE+   +++V + A +L  ++  ++  L+  +  L+  ++     +   D+V YA RI+G TSAP  W+PG  M GF PPAP+  MMRAG LS   V    +   EK    A  + K  D  A++  N
Sbjct:   55 KDRDLLTAVKKLARHQVAQKELLRIEAEIENKKQKVVQYAAQLRCSQEDIADVLRKHRVTLQNAKQKSKVVLDPRDIVAYAHRIAGTTSAPKEWQPGFPMFGFMPPAPQEHMMRAGVLSRGIVAEIVTQGPEKYTSTAARVSKEGDGDAMEKLN 208          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: H3H5Y2_PHYRM (PPM-type phosphatase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5Y2_PHYRM)

HSP 1 Score: 70.1 bits (170), Expect = 5.080e-10
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 0
Query:   11 KELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS 129
            K+ +L  A   LA+HQ    E+  + AE+ + + +V + A +L R++  ++  L+  + +L+  +      +   D+V YA RI+G TSAP  W+PG+ M GF PPAP+  MMRAG LS
Sbjct:   58 KDRELLLAVKKLARHQLAQKELLRVEAEIESKKHKVVQYAAQLRRSQEDIANVLRKHRVVLQNAKHQSKVVLDPRDIVAYAHRIAGTTSAPKEWQPGLPMFGFMPPAPQEHMMRAGVLS 176          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: A0A5D6Y451_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y451_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.160e-9
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 0
Query:   11 KELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVTTGTSLSAEK 143
            K+ +L +A   LA+HQ    E+ A++ E+   + +V   A +L R++      L+ AKQ  +         +   D+V YA RI+G TSAP  W+PG  M GF PPAP+P MMRAG LS   V    +   EK
Sbjct:   54 KDRELLAAVKKLARHQVAQKELAAVQEEISKKKLKVVRYAAQLRRSQEKHQTVLQHAKQKTKV-------VLDPRDIVAYAHRIAGTTSAPREWRPGFPMFGFMPPAPQPHMMRAGVLSRGVVAETVTQEPEK 179          
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Match: A0A3M6VUY4_9STRA (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUY4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.590e-9
Identity = 51/155 (32.90%), Postives = 82/155 (52.90%), Query Frame = 0
Query:   11 KELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECANRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSAPSYWKPGMAMVGFAPPAPRPEMMRAGALS----AFAVTTGTSLSAEKLLKIAEGLDKPPDKAALD 161
            K+  L +A   L++HQ    E+  ++ E+   +++V E A +L R++  ++  L+  + +L+  ++     +   D++ YA RI+G TSAP  W+PG  M GF PPAP+  MMRAG LS    A  VT G  L      ++ +  D   D   LD
Sbjct:   58 KDRDLLAAVKKLSRHQVAQTELLRIKTEIANKKQKVVEYATQLHRSQENVAQVLRKHRVVLQNTKEKAKVVLDPRDLIAYAHRIAGTTSAPKEWQPGFPMFGFMPPAPQEHMMRAGVLSRGIVAEIVTQGPELYTSIAARVKQEGDGHEDIEKLD 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1857.4582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LFT3_ECTSI5.790e-6170.25Mediator of RNA polymerase II transcription subuni... [more]
A0A835YUZ4_9STRA5.950e-1555.56Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3UVI8_HETAK2.210e-1246.51Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CAS9_PYTOL1.990e-1137.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TZF4_9STRA8.540e-1137.80Mediator of RNA polymerase II transcription subuni... [more]
A0A0P1AJW5_PLAHL4.080e-1037.96Mediator of RNA polymerase II transcription subuni... [more]
D0NRG4_PHYIT4.140e-1033.12Mediator of RNA polymerase II transcription subuni... [more]
H3H5Y2_PHYRM5.080e-1036.97PPM-type phosphatase domain-containing protein n=1... [more]
A0A5D6Y451_9STRA2.160e-937.59Mediator of RNA polymerase II transcription subuni... [more]
A0A3M6VUY4_9STRA2.590e-932.90Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 25..52
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 11..134
e-value: 1.4E-13
score: 51.0
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 5..257

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1857contigH-paniculata_contig1857:14910..18175 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1857.4582.1mRNA_H-paniculata_contig1857.4582.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1857 14583..18211 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1857.4582.1 ID=prot_H-paniculata_contig1857.4582.1|Name=mRNA_H-paniculata_contig1857.4582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MKKALLVLKGKELKLASAGDALAQHQRLHLEVEALRAEVRAGEKQVQECA
NRLTRAEATLSGPLKAAKQLLEAGRKAEGGEIYVADVVDYAQRISGMTSA
PSYWKPGMAMVGFAPPAPRPEMMRAGALSAFAVTTGTSLSAEKLLKIAEG
LDKPPDKAALDDTNGRSSDSTSDDNSSSEILPNGTKKAGDGKRDEDGKSR
KTKEAEAKRTAAGKAGASSNSVGGLSGIFSRDSAPEKPKISLDISDDSDS
DEDDDSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4