mRNA_H-paniculata_contig18568.4580.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18568.4580.1
Unique NamemRNA_H-paniculata_contig18568.4580.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18568.4580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18568contigH-paniculata_contig18568:2686..3073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size314
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18568.4580.1prot_H-paniculata_contig18568.4580.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18568 2816..3054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.7809434-UTR-H-paniculata_contig18568:2685..28151622929435.7809434-UTR-H-paniculata_contig18568:2685..2815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18568 2686..2815 +
1691480860.2644205-UTR-H-paniculata_contig18568:2685..28151691480860.2644205-UTR-H-paniculata_contig18568:2685..2815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18568 2686..2815 +
1622929435.8272405-UTR-H-paniculata_contig18568:3054..30731622929435.8272405-UTR-H-paniculata_contig18568:3054..3073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18568 3055..3073 +
1691480860.2905762-UTR-H-paniculata_contig18568:3054..30731691480860.2905762-UTR-H-paniculata_contig18568:3054..3073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18568 3055..3073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.7949936-CDS-H-paniculata_contig18568:2815..29711622929435.7949936-CDS-H-paniculata_contig18568:2815..2971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18568 2816..2971 +
1691480860.2754476-CDS-H-paniculata_contig18568:2815..29711691480860.2754476-CDS-H-paniculata_contig18568:2815..2971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18568 2816..2971 +
1622929435.8157814-CDS-H-paniculata_contig18568:3045..30541622929435.8157814-CDS-H-paniculata_contig18568:3045..3054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18568 3046..3054 +
1691480860.283157-CDS-H-paniculata_contig18568:3045..30541691480860.283157-CDS-H-paniculata_contig18568:3045..3054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18568 3046..3054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18568.4580.1

>prot_H-paniculata_contig18568.4580.1 ID=prot_H-paniculata_contig18568.4580.1|Name=mRNA_H-paniculata_contig18568.4580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MSYLRVMDKAVLRTRVRTGCLTASEDTPLPPRAEARSSRAACNCAKLRVN
IGVF*
back to top

mRNA from alignment at H-paniculata_contig18568:2686..3073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18568.4580.1 ID=mRNA_H-paniculata_contig18568.4580.1|Name=mRNA_H-paniculata_contig18568.4580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=388bp|location=Sequence derived from alignment at H-paniculata_contig18568:2686..3073+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGGGTTTGAGGTGGGAGACAAGTCACTTCTCCTGGGTGGGGAGGTT
GTGGGGTTCGACTGCCAGAGCGGGGTACTTCGGCAAAAGAGTACCCCAAA
CTGGCAGCCATTCCTCCTAGGGTATGTGCAATGAGTTACCTCCGGGTAAT
GGACAAAGCAGTTTTAAGGACGAGAGTCCGAACAGGGTGTTTGACCGCAA
GCGAGGATACCCCATTACCACCCAGGGCCGAAGCTCGTTCGAGTAGGGCG
GCGTGTAACTGCGCCAAGTTGAGGGTCAACATTGGGGTGTTTTTTTTCTT
TTTTAATCACTGGAAGGCTGAGGCAAAAACCTTTTCCGCTGCTTCCACAT
CCACATTGAGGTGTTTTAGTGGGTGAGAGCCCCACACT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18568:2686..3073+

>mRNA_H-paniculata_contig18568.4580.1 ID=mRNA_H-paniculata_contig18568.4580.1|Name=mRNA_H-paniculata_contig18568.4580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig18568:2686..3073+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTACCTCCGGGTAATGGACAAAGCAGTTTTAAGGACGAGAGTCCG
AACAGGGTGTTTGACCGCAAGCGAGGATACCCCATTACCACCCAGGGCCG
AAGCTCGTTCGAGTAGGGCGGCGTGTAACTGCGCCAAGTTGAGGGTCAAC
ATTGGGATGAGTTACCTCCGGGTAATGGACAAAGCAGTTTTAAGGACGAG
AGTCCGAACAGGGTGTTTGACCGCAAGCGAGGATACCCCATTACCACCCA
GGGCCGAAGCTCGTTCGAGTAGGGCGGCGTGTAACTGCGCCAAGTTGAGG
GTCAACATTGGGGTGTTTTAGGTGTTTTAG
back to top