mRNA_H-paniculata_contig18567.4579.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI) HSP 1 Score: 239 bits (609), Expect = 1.080e-73 Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
RV TAVQSALK+AVSRVLTPKKSTDVLREVKA +SRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVH RCL++P+FEKGYA+DSS+VAR+A+KHA EEGYDCVLIDTAGRMQ
Sbjct: 345 RVKTAVQSALKEAVSRVLTPKKSTDVLREVKAARSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHCRCLDVPLFEKGYARDSSAVAREAVKHAAEEGYDCVLIDTAGRMQ 478
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A418FD97_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FD97_9STRA) HSP 1 Score: 190 bits (482), Expect = 5.790e-58 Identity = 89/134 (66.42%), Postives = 114/134 (85.07%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
R+ T VQ+AL+ A+ R+LTPKKSTDVLR+V A + +G+ YS+ FVG+NGVGKSTSL+KVAYYLK G+K++IAACDTFRSGAVEQL H + L++P+FE+GYAKD +SVA+DA+ H + G+DCVLIDTAGRMQ
Sbjct: 93 RIQTVVQTALEAALLRILTPKKSTDVLRQVLAARDQGRCYSIVFVGVNGVGKSTSLSKVAYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVAKDAIAHGNDHGFDCVLIDTAGRMQ 226
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A397AFG7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AFG7_9STRA) HSP 1 Score: 190 bits (482), Expect = 2.460e-57 Identity = 89/134 (66.42%), Postives = 114/134 (85.07%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
R+ T VQ+AL+ A+ R+LTPKKSTDVLR+V A + +G+ YS+ FVG+NGVGKSTSL+KVAYYLK G+K++IAACDTFRSGAVEQL H + L++P+FE+GYAKD +SVA+DA+ H + G+DCVLIDTAGRMQ
Sbjct: 145 RIQTVVQTALEAALLRILTPKKSTDVLRQVLAARDQGRCYSIVFVGVNGVGKSTSLSKVAYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVAKDAIAHGNDHGFDCVLIDTAGRMQ 278
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A7S3Y919_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y919_HETAK) HSP 1 Score: 187 bits (474), Expect = 2.050e-56 Identity = 90/130 (69.23%), Postives = 115/130 (88.46%), Query Frame = 1
Query: 13 AVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
A ++AL++AV RVLTPK+ D+LREV A +++G+ +++AFVG+NGVGKSTSLAKVAYYL+E+G KVL+AACDTFRSGAVEQL VH RCL++P+FEKGYAKD ++VA AL+HA E+G+D VLIDTAGRMQ
Sbjct: 72 AAKAALREAVLRVLTPKRPVDLLREVHAAQAKGRPFAVAFVGVNGVGKSTSLAKVAYYLREHGCKVLLAACDTFRSGAVEQLGVHARCLDVPLFEKGYAKDPAAVAVAALEHAREQGFDAVLIDTAGRMQ 201
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A8K1FLZ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLZ4_PYTOL) HSP 1 Score: 191 bits (484), Expect = 3.490e-55 Identity = 91/134 (67.91%), Postives = 113/134 (84.33%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
RV+T V+ AL+ A+ R+LTPKKSTDVLRE+ K+ G+ YS+ FVG+NGVGKSTSL+KV YYLK G+KV+IAACDTFRSGAVEQL H + L++P+FEKGYA+D ++VARDA+K+ E GYDCVLIDTAGRMQ
Sbjct: 358 RVSTVVRKALEAALLRILTPKKSTDVLREIMDAKAAGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVKVMIAACDTFRSGAVEQLNQHAKVLDVPLFEKGYARDPAAVARDAVKYGTENGYDCVLIDTAGRMQ 491
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A485LAK6_9STRA (Aste57867_18399 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAK6_9STRA) HSP 1 Score: 190 bits (483), Expect = 3.590e-55 Identity = 90/134 (67.16%), Postives = 112/134 (83.58%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
R+ T VQ AL+ A+ R+LTPKKSTDVLREV A + +G+ YS+ FVG+NGVGKSTSL+KV YYLK G+K++IAACDTFRSGAVEQL H + L++P+FE+GYAKD ++VARDA+ H E G+DCVLIDTAGRMQ
Sbjct: 339 RIQTVVQKALEAALLRILTPKKSTDVLREVLAAREQGRCYSIVFVGVNGVGKSTSLSKVCYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPATVARDAIAHGNEHGFDCVLIDTAGRMQ 472
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: W4GVN3_9STRA (SRP54 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVN3_9STRA) HSP 1 Score: 190 bits (483), Expect = 3.830e-55 Identity = 89/134 (66.42%), Postives = 114/134 (85.07%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
R+ T VQ+AL+ A+ R+LTPKKSTDVLR+V A + +G+ YS+ FVG+NGVGKSTSL+KVAYYLK G+K++IAACDTFRSGAVEQL H + L++P+FE+GYAKD +SVA+DA+ H + G+DCVLIDTAGRMQ
Sbjct: 343 RIQTVVQTALEGALLRILTPKKSTDVLRQVLAARDQGRCYSIVFVGVNGVGKSTSLSKVAYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVAKDAIAHGNDHGFDCVLIDTAGRMQ 476
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A6G0WUE0_9STRA (SRP54 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUE0_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.160e-54 Identity = 90/134 (67.16%), Postives = 112/134 (83.58%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
R+ T VQ AL+ A+ R+LTPKKSTDVLREV A + +G+ YS+ FVG+NGVGKSTSL+KV YYLK G+K++IAACDTFRSGAVEQL H + L++P+FE+GYAKD +SVARDA+ + E G+DCVLIDTAGRMQ
Sbjct: 349 RIQTVVQKALEAALLRILTPKKSTDVLREVLAAREQGRCYSIVFVGVNGVGKSTSLSKVCYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVARDAIAYGNENGFDCVLIDTAGRMQ 482
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A662XUH7_9STRA (SRP54 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUH7_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.360e-54 Identity = 89/134 (66.42%), Postives = 112/134 (83.58%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
R++T V+ AL+ A+ R+LTPKKSTDVLRE+ K+ G+ YS+ FVG+NGVGKSTSL+KV YYLK G+ V+IAACDTFRSGAVEQL H + L++P+FEKGYAKD +SVA+DA+K+ + GYDCVLIDTAGRMQ
Sbjct: 353 RISTVVRKALEAALLRILTPKKSTDVLREILEAKAEGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVNVMIAACDTFRSGAVEQLNQHAKVLDVPLFEKGYAKDPASVAKDAIKYGTDNGYDCVLIDTAGRMQ 486
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Match: A0A5D6Y7Z3_9STRA (SRP54 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7Z3_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.510e-54 Identity = 90/134 (67.16%), Postives = 114/134 (85.07%), Query Frame = 1
Query: 1 RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVGKSTSLAKVAYYLKENGIKVLIAACDTFRSGAVEQLRVHGRCLEIPIFEKGYAKDSSSVARDALKHAEEEGYDCVLIDTAGRMQ 402
RV+T V+ AL+ A+ R+LTPKKSTDVLRE+ A K+ G+ YS+ FVG+NGVGKSTSL+KV YYLK G+KVLIAACDTFRSGAVEQL H + L++P+F+KGYAKD ++VA++A+K+ E G+DCVLIDTAGRMQ
Sbjct: 366 RVSTVVRKALEAALLRILTPKKSTDVLREILAAKAAGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVKVLIAACDTFRSGAVEQLNQHAKVLDVPLFQKGYAKDPAAVAKEAVKYGTENGFDCVLIDTAGRMQ 499 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18567.4579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18567.4579.1 >prot_H-paniculata_contig18567.4579.1 ID=prot_H-paniculata_contig18567.4579.1|Name=mRNA_H-paniculata_contig18567.4579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp RVNTAVQSALKDAVSRVLTPKKSTDVLREVKATKSRGKVYSMAFVGINGVback to top mRNA from alignment at H-paniculata_contig18567:387..4426+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18567.4579.1 ID=mRNA_H-paniculata_contig18567.4579.1|Name=mRNA_H-paniculata_contig18567.4579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4040bp|location=Sequence derived from alignment at H-paniculata_contig18567:387..4426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18567:387..4426+ >mRNA_H-paniculata_contig18567.4579.1 ID=mRNA_H-paniculata_contig18567.4579.1|Name=mRNA_H-paniculata_contig18567.4579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig18567:387..4426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |