mRNA_H-paniculata_contig18566.4578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18566.4578.1
Unique NamemRNA_H-paniculata_contig18566.4578.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18566.4578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18566contigH-paniculata_contig18566:854..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.643229-UTR-H-paniculata_contig18566:853..8581622929435.643229-UTR-H-paniculata_contig18566:853..858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18566 854..858 +
1691480860.1922793-UTR-H-paniculata_contig18566:853..8581691480860.1922793-UTR-H-paniculata_contig18566:853..858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18566 854..858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.654297-CDS-H-paniculata_contig18566:858..13261622929435.654297-CDS-H-paniculata_contig18566:858..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18566 859..1326 +
1691480860.2019143-CDS-H-paniculata_contig18566:858..13261691480860.2019143-CDS-H-paniculata_contig18566:858..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18566 859..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18566.4578.1prot_H-paniculata_contig18566.4578.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18566 859..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18566.4578.1

>prot_H-paniculata_contig18566.4578.1 ID=prot_H-paniculata_contig18566.4578.1|Name=mRNA_H-paniculata_contig18566.4578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MTSGVGKAMVVTAQEAEMASAQKALRDRDGGRGRSGDGDGAGGGGGGGSG
FEAGGAKGGSDAATGEAGGDTVNTGRGGACGRRNRRQGRTATRDGDSNGG
DDGEGGAARDRSSGGGGDGCSGYGDSGESAAGAGVFRGEGAGANTAGVAG
RSEHSS
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mRNA from alignment at H-paniculata_contig18566:854..1326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18566.4578.1 ID=mRNA_H-paniculata_contig18566.4578.1|Name=mRNA_H-paniculata_contig18566.4578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=473bp|location=Sequence derived from alignment at H-paniculata_contig18566:854..1326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATGACATCGGGAGTGGGGAAGGCAATGGTGGTGACGGCACAAGAG
GCGGAAATGGCGTCAGCACAGAAGGCCCTCCGCGACAGAGACGGAGGCAG
AGGCAGAAGTGGAGACGGAGACGGCGCGGGCGGAGGCGGCGGCGGCGGCA
GCGGATTTGAGGCCGGAGGAGCAAAGGGAGGCAGCGACGCCGCCACGGGT
GAAGCCGGGGGCGACACTGTCAATACAGGACGAGGCGGAGCATGTGGAAG
GCGGAATCGGAGGCAGGGGAGGACCGCTACGAGGGACGGAGACAGCAACG
GTGGTGACGATGGCGAAGGCGGGGCAGCACGCGACCGCAGCAGCGGCGGT
GGAGGTGATGGGTGCAGCGGATACGGCGACAGCGGCGAAAGCGCTGCCGG
AGCTGGGGTCTTCAGGGGAGAAGGAGCAGGTGCAAACACCGCGGGAGTTG
CCGGGAGAAGTGAACACAGTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig18566:854..1326+

>mRNA_H-paniculata_contig18566.4578.1 ID=mRNA_H-paniculata_contig18566.4578.1|Name=mRNA_H-paniculata_contig18566.4578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig18566:854..1326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATCGGGAGTGGGGAAGGCAATGGTGGTGACGGCACAAGAGGCGGA
AATGGCGTCAGCACAGAAGGCCCTCCGCGACAGAGACGGAGGCAGAGGCA
GAAGTGGAGACGGAGACGGCGCGGGCGGAGGCGGCGGCGGCGGCAGCGGA
TTTGAGGCCGGAGGAGCAAAGGGAGGCAGCGACGCCGCCACGGGTGAAGC
CGGGGGCGACACTGTCAATACAGGACGAGGCGGAGCATGTGGAAGGCGGA
ATCGGAGGCAGGGGAGGACCGCTACGAGGGACGGAGACAGCAACGGTGGT
GACGATGGCGAAGGCGGGGCAGCACGCGACCGCAGCAGCGGCGGTGGAGG
TGATGGGTGCAGCGGATACGGCGACAGCGGCGAAAGCGCTGCCGGAGCTG
GGGTCTTCAGGGGAGAAGGAGCAGGTGCAAACACCGCGGGAGTTGCCGGG
AGAAGTGAACACAGTAGCATGACATCGGGAGTGGGGAAGGCAATGGTGGT
GACGGCACAAGAGGCGGAAATGGCGTCAGCACAGAAGGCCCTCCGCGACA
GAGACGGAGGCAGAGGCAGAAGTGGAGACGGAGACGGCGCGGGCGGAGGC
GGCGGCGGCGGCAGCGGATTTGAGGCCGGAGGAGCAAAGGGAGGCAGCGA
CGCCGCCACGGGTGAAGCCGGGGGCGACACTGTCAATACAGGACGAGGCG
GAGCATGTGGAAGGCGGAATCGGAGGCAGGGGAGGACCGCTACGAGGGAC
GGAGACAGCAACGGTGGTGACGATGGCGAAGGCGGGGCAGCACGCGACCG
CAGCAGCGGCGGTGGAGGTGATGGGTGCAGCGGATACGGCGACAGCGGCG
AAAGCGCTGCCGGAGCTGGGGTCTTCAGGGGAGAAGGAGCAGGTGCAAAC
ACCGCGGGAGTTGCCGGGAGAAGTGAACACAGTAGC
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