mRNA_H-paniculata_contig1856.4576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: D8LLQ9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ9_ECTSI) HSP 1 Score: 441 bits (1133), Expect = 1.870e-131 Identity = 271/520 (52.12%), Postives = 307/520 (59.04%), Query Frame = 1
Query: 1 GSPWEEGETTAVGGVGVGXXXXXXXXXXXXXXXAPCRVMQGFLRKRGAGRLWGVAEEWSYRWVVLRDDGRLLWYLSVPADSWEVPNGHLSLRGARISYADGDLVRGGLREDEIRGGELFPLVLEVDADQVETKNRDQHAAETRQQRXXXXXXXXXXXXXXXXXXVKVRNDSNQQSLTSTSPAFSSASSSFTRPLCPPCPXXXXXXXXXXXXLGEGRRRRVVFLSVWGKEEREQWADALSR----QGYATGG----EQKLELGKELRLKAGQFRRKELERLLREPEEVLARPHEAFALLVGARGGEGGGVTRAEFCKVASQYLLPMCDVYTAGTVFDALCPNRLDVPDNAGP-SYPEGLEELLGLIGEGTEAGGADGVRTGRVSAEVLGGRGGGGRRLTFDAFERYARALSRAFRTSIAYPAWEDLRMRLDLHPMEVLIMWEEFVVEADRSSASSQMQMDLMALAGGAGTLFLTDRHLFLHFSKRQQVRVVPLGTIKKVRASTSRAGLFTVEDVIELVGCE 1533
G W GET A+GG P VMQGFLRKR A R WG + W YRWVVLRDDGRLLWYLSVPAD WEVPNG+L LRGA +S+++ L+R LREDE + QQ EG RR VVFLS WG EER +W +ALS+ G GG E + + G+ELRL+A + RRK L RLL PEEVL+ PHEAFALLVG GG GGGVTR EFC+ A ++LLPMCDVYTAGTVFDALCP R DVPDN GP S EGLEELL L+GEG +A G DGVRTGRV AE L G+G G RLTFD F RYA ALSRAFR S ++P+WEDLR+RL LHP+E LIM EEFV EA RSS S Q+DLMALAG +G LFLTDRHL LHF KRQQ RVVPLG+++ VR S+SRAG FTV+D IEL GCE
Sbjct: 322 GGAW--GETAAIGG------RVAAAGVRVITASPPRSVMQGFLRKRAAARSWGSSGVWEYRWVVLRDDGRLLWYLSVPADPWEVPNGYLCLRGAGVSFSESVLLRNHLREDEPQ---------------------------------------------------------QQQ---------------------------------------EGERR-VVFLSTWGTEERAEWVEALSKYTESSGSGGGGSGKNEPRADCGRELRLRAEERRRKGLARLLETPEEVLSNPHEAFALLVG--GGSGGGVTRGEFCESAGKHLLPMCDVYTAGTVFDALCPKRTDVPDNPGPGSSGEGLEELLDLMGEGAQARGVDGVRTGRVHAEALAGQGIG-ERLTFDVFRRYAEALSRAFRPSDSHPSWEDLRIRLGLHPLEALIMGEEFVAEAPRSSFS---QLDLMALAGWSGNLFLTDRHLVLHFPKRQQARVVPLGSVQDVRGSSSRAGPFTVDDAIELFGCE 730
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE) HSP 1 Score: 291 bits (745), Expect = 3.470e-82 Identity = 237/589 (40.24%), Postives = 296/589 (50.25%), Query Frame = 1
Query: 2473 VRSRALVRVTNPPVRPLLFCSCPHLPNRDEILRNFLLSTGASS--RSDVMRTTQKQESSGPTPP----------------------------------------QRLPAVMQMRRRRWLLTLARFMARPREYEKRREASIRGFTPQKFRQEWELFWELFDPISDAFDTKVRELLEWRRPLRSLTVMSALLLVAYFDLVRYGIPLVLLGNVAYIYAVGVAETSTRRGP--------DSLRRGPGTPGGLVTPSTNSKHGHIRHPSPHGANLPETTGS--GTPTTALFSTATIVREHNNGIDISIPTVATSLAETTXXXXXXXXXXXXXXXXXXXXGAAAGRGIKATAALSPDSTRQVSSSSLPANHRPVAXXXXXXXXXXXXXXXXXXXXXSNNRGADVA----RPVSGSSSDSGKEGSAALSAMAASVVALEASNGPGIGTVAAVTATAAADGEGGVLPQXXXXXXXXXXXHEGLFSRVKGIQDQAGKMQAKLHTYNARLLRVKSLHAWSDPGRTRAWIAVVSSVAAVLAILPARYTFSAVVIFLFTDPIRPKGKTIPEVLLEDFWQGLPVESTTHSNVRMAAIYSRHD 4071
+RSRAL + T RPLLF S +PNR EI+R FL S G ++ R D + L + R RRWLLTLARFMARPRE+E RR A++R FTPQKFRQEWELFWEL DP+ D + ++LL+W+ P++SL+VM+ LLLVAY DLVRY IPL LL NVAYIY VG T ++ R+ P G H R S G E GS P + + G + P + S A T G + G ++ A+ + +VS+S A+ VA GAD + P +G ++ G+ S SVV P A ++ + G XXXXXXXXXXX G+ SRVKG+QD+AG+ QAKLH YNA LLRVKSLHAWSDPGRT+ W A VS +AAVLAI+PARYTF+A+V+FLFT+PIRP+ K I E+LLEDFW+GLPVES TH+NVRMAAIYSRHD
Sbjct: 1 MRSRALSKATRSGARPLLFLSSKGIPNRHEIVRAFLESAGTNNGGRDDYSGSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDELDERSRRRGRRWLLTLARFMARPREFELRRAAAVRTFTPQKFRQEWELFWELVDPVFDGLEKATKDLLQWKNPMQSLSVMTGLLLVAYHDLVRYAIPLALLANVAYIYGVGCITTDGXXXXXXQADLFGNAPRKRPAVEG-----DGQQLQQHTRRRSSGGRLGAEGDGSRRSRPPSPV-----------PGSRLQRPAPSPSAAVTAGGTAPGVQRLAASSRMAAARGGGSAEGEPSSVAVRA-ADGEVSAS---ASRGGVA-------------------------GADESWVREAPAAGETNAHGQGASG-------SVVT------PRAWGEAEMSRAGKSSGGPAXXXXXXXXXXXXXXXXGGIISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHD 531
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: A0A6H5LAP6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP6_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.490e-51 Identity = 166/334 (49.70%), Postives = 193/334 (57.78%), Query Frame = 1
Query: 1 GSPWEEGETTAVGGVGVGXXXXXXXXXXXXXXXAPCRVMQGFLRKRGAGRLWGVAEEWSYRWVVLRDDGRLLWYLSVPADSWEVPNGHLSLRGARISYADGDLVRGGLREDEIRGGELFPLVLEV--DADQVETKNRDQHAAETRQQRXXXXXXXXXXXXXXXXXXVKVRNDSNQQSLTSTSPAFSSASSSFTRPLCPPCPXXXXXXXXXXXXLGEGRRRRVVFLSVWGKEEREQWADALSR------QGYATGGEQ--KLELGKELRLKAGQFRRKELERLLREPEEVLARPHEAFALLVGARGGEGGGVTRAEFCKVASQYLLPMCDVYTAG 972
G W GET A+GG P RVMQGFLRKR A R WG + W YRWVVLRDDGRLLWYLSVPAD WEVPNG+L LRGAR+S+++G L+R LREDE++G L P V++V D A +Q XXXXXXXXXXXXXXX R XXXXXXXXXXXX EG RR VVFLS WG EER +W +ALS G A GG+ + + G+ELRL+A + RRK L RLL PEEVL+ PHEAFALLVG+ G GGGVTR EFC+ + P C V++ G
Sbjct: 120 GGAW--GETAAIGG----RVAAAGVRARVTTASPPRRVMQGFLRKRAAARSWGSSGVWEYRWVVLRDDGRLLWYLSVPADPWEVPNGYLCLRGARVSFSEGVLLRNNLREDEVQGDRLCPFVVDVIEHGDGXXXXXSGGDPAVLQQAHWQQXXXXXXXXXXXXXXXXXGRGXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXEGERR-VVFLSTWGTEERAEWVEALSMYTQSSGSGGAGGGKNDPRADRGRELRLRAEERRRKGLGRLLETPEEVLSNPHEAFALLVGS--GSGGGVTRGEFCEGVHR---PRCGVHSGG 427
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: D8LLQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI) HSP 1 Score: 173 bits (438), Expect = 1.150e-46 Identity = 82/108 (75.93%), Postives = 97/108 (89.81%), Query Frame = 1
Query: 3748 IQDQAGKMQAKLHTYNARLLRVKSLHAWSDPGRTRAWIAVVSSVAAVLAILPARYTFSAVVIFLFTDPIRPKGKTIPEVLLEDFWQGLPVESTTHSNVRMAAIYSRHD 4071
+QD+AG+ QAKLH YNA LLRVKSLHAWSDPGRT+ W A VS +AA+LAI+PARYTF+A+V+FLFT+P+RPK K I E+LLEDFW+GLPVES TH+NVRMAAIYSRHD
Sbjct: 1 MQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAALLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHD 108
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: A0A6H5L884_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L884_9PHAE) HSP 1 Score: 172 bits (437), Expect = 2.010e-43 Identity = 98/159 (61.64%), Postives = 112/159 (70.44%), Query Frame = 1
Query: 1066 IGEGTEAGGADGVRTGRVSAEVLGGRGGGGR------------------RLTFDAFERYARALSRAFRTSIAYPAWEDLRMRLDLHPMEVLIMWEEFVVEADRSSASSQMQMDLMALAGGAGTLFLTDRHLFLHFSKRQQVRVVPLGTIKKVRASTSRA 1488
+GEGTEA G DGVRTGRV AE L G G G R RLTFD F RY+ ALSRAFR S ++P+WEDLR+RL LHP+E LIM EEFV E RSS+S Q+DLMALAG +G LFLTDRHL LHF KRQQ RVVPLG+++ VR S+SRA
Sbjct: 1 MGEGTEARGVDGVRTGRVHAEALAGHGIGERYPVRSLDTASDGVANTELRLTFDVFRRYSEALSRAFRPSDSHPSWEDLRIRLGLHPLESLIMGEEFVAEVPRSSSS---QLDLMALAGWSGNLFLTDRHLLLHFPKRQQARVVPLGSVQDVRGSSSRA 156
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: D8LLQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ7_ECTSI) HSP 1 Score: 129 bits (325), Expect = 2.090e-31 Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 2722 MARPREYEKRREASIRGFTPQKFRQEWELFWELFDPISDAFDTKVRELLEWRRPLRSLTVMSALLLVAYFDLVRYGIPLVLLGNVAYIYA 2991
MARPRE+E RR A++R FTPQKFRQEWELFWEL DP+ D + +LL+W+ P++SL+VM+ LLLVAY DLVRY IPL LL NVAYIYA
Sbjct: 1 MARPREFELRRAAAVRAFTPQKFRQEWELFWELVDPVFDGLEKTTEDLLQWKNPVQSLSVMTGLLLVAYHDLVRYAIPLALLANVAYIYA 90
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: A0A835YWJ6_9STRA (PRT_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ6_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.840e-27 Identity = 53/98 (54.08%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 3769 MQAKLHTYNARLLRVKSLHAWSDPGRTRAWIAVVSSVAAVLAILPARYTFSAVVIFLFTDPIRPKGKTIPEVLLEDFWQGLPVESTTHSNVRMAAIYS 4062
MQAKLH YN LL+++SL AW+DP RT+ ++ + A +LA +P RYT++ V+FLFT P+R KT+PE+LL+DFW+GLPV+S H+N+ MAAIY+
Sbjct: 1 MQAKLHAYNVALLKLRSLVAWTDPTRTKVFVLFLLFAALLLATIPLRYTWAGAVVFLFTKPLRSMKKTVPELLLDDFWRGLPVDSALHTNLDMAAIYT 98
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: D8LLQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 3.540e-16 Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1
Query: 3919 SAVVIFLFTDPIRPKGKTIPEVLLEDFWQGLPVESTTHSNVRMAAIYSRHD 4071
+A+V+FLFT+P+RPK K I E+LLEDFW+GLPVES TH+NVRMAAIYSRHD
Sbjct: 103 AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHD 153
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Match: A0A7S3UQL6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQL6_HETAK) HSP 1 Score: 54.7 bits (130), Expect = 4.170e-5 Identity = 24/58 (41.38%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 3889 LAILPARYTFSAVVIFLFTDPIRPKGKTIPEVLLEDFWQGLPVESTTHSNVRMAAIYS 4062
LA+ PARY ++A V+F F+ P+R +P +LL F++G+P S TH++++M +IY+
Sbjct: 8 LALCPARYLYTAGVLFFFSKPLRDDKPPLPIILLLHFFKGIPTGSHTHTHLQMESIYN 65 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1856.4576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1856.4576.1 >prot_H-paniculata_contig1856.4576.1 ID=prot_H-paniculata_contig1856.4576.1|Name=mRNA_H-paniculata_contig1856.4576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1348bp MQGFLRKRGAGRLWGVAEEWSYRWVVLRDDGRLLWYLSVPADSWEVPNGHback to top mRNA from alignment at H-paniculata_contig1856:540..22047+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1856.4576.1 ID=mRNA_H-paniculata_contig1856.4576.1|Name=mRNA_H-paniculata_contig1856.4576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=21508bp|location=Sequence derived from alignment at H-paniculata_contig1856:540..22047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1856:540..22047+ >mRNA_H-paniculata_contig1856.4576.1 ID=mRNA_H-paniculata_contig1856.4576.1|Name=mRNA_H-paniculata_contig1856.4576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8088bp|location=Sequence derived from alignment at H-paniculata_contig1856:540..22047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |