mRNA_H-paniculata_contig18555.4575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18555.4575.1
Unique NamemRNA_H-paniculata_contig18555.4575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18555.4575.1 vs. uniprot
Match: D7FTZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ2_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 2.690e-48
Identity = 87/120 (72.50%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:    1 QAALVSLALYVLQHPETLGETIVLGKKLVQSILDDPDTVQQVTDMSLKVMSDARFQKGAADLVVAVGQSDEVYGAVTELASRVIQDPKVRETLSAMLSASSHKVLEDQEVLDHSKEFVAQ 360
            QAALVSLALYVLQHP+T  ET VL KKL+++ILDDPDTV QVTDM LKV+   +F++GA++LVVA+GQS EVYGAV +LASRVIQDPKV+ TLS +LSASS +VL+DQ V DHSK FVAQ
Sbjct:   53 QAALVSLALYVLQHPDTRAETKVLAKKLIKAILDDPDTVLQVTDMVLKVIRTPQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQ 172
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BLAST of mRNA_H-paniculata_contig18555.4575.1 vs. uniprot
Match: A0A6H5K116_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K116_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.960e-23
Identity = 61/120 (50.83%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:    1 QAALVSLALYVLQHPETLGETIVLGKKLVQSILDDPDTVQQVTDMSLKVMSDARFQKGAADLVVAVGQSDEVYGAVTELASRVIQDPKVRETLSAMLSASSHKVLEDQEVLDHSKEFVAQ 360
            QAALVSLALYVLQHP+T                       QVTDM+LKV+ + +F++GA++LVVA+GQS+EVYGA             V+ TLS +LSASS +VL+DQ V DHSK FVAQ
Sbjct:  328 QAALVSLALYVLQHPDTRAXXXXXXXXXXXXXXXXXXXXXQVTDMALKVIRNPQFRQGASELVVALGQSEEVYGAXXXXXXXXXXXXXVQATLSTVLSASSREVLQDQVVFDHSKVFVAQ 447
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BLAST of mRNA_H-paniculata_contig18555.4575.1 vs. uniprot
Match: A0A835YV69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV69_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.980e-12
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:    1 QAALVSLALYVLQHPETLGETIVLGKKLVQSILDDPDTVQQVTDMSLKVMSDARFQKGAADLVVAVGQSDEVYGAVTELASRVIQDPKVRETLSAMLSASSHKVLEDQEVLDHSKEFVAQ 360
            QAA+VSLA +VLQHP+TL E   L +KL+  ++ +       T  +  V++  +       L       D VY A  ++ SR+I +P+V+E +S +++  SH VL D +VL H K+FVA+
Sbjct:  103 QAAIVSLASHVLQHPDTLQEVHALAQKLIAQLVKEA----AATLRTCTVLASLKHTHLKCIL-------DHVYEAFLDMVSRIIAEPRVKEQVSLIMADGSHHVLADADVLQHGKDFVAE 211
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BLAST of mRNA_H-paniculata_contig18555.4575.1 vs. uniprot
Match: W7TJZ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.780e-8
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  211 EVYGAVTELASRVIQDPKVRETLSAMLSASSHKVLEDQEVLDHSKEFVAQ 360
            +VY AV EL++R++ +PKV   ++ +L ASSHKVLED +V+DHSK FVA+
Sbjct:   23 QVYTAVVELSARLVAEPKVLTAVNELLLASSHKVLEDPQVVDHSKTFVAE 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18555.4575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTZ2_ECTSI2.690e-4872.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K116_9PHAE1.960e-2350.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV69_9STRA1.980e-1236.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TJZ8_9STRA3.780e-856.00Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18555contigH-paniculata_contig18555:152..3143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue2e-37
Seed eggNOG ortholog2880.D7FTZ2
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CKXH@1,2SE2H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18555.4575.1prot_H-paniculata_contig18555.4575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18555 152..3143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929435.0698266-CDS-H-paniculata_contig18555:151..2021622929435.0698266-CDS-H-paniculata_contig18555:151..202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 152..202 -
1691480859.947868-CDS-H-paniculata_contig18555:151..2021691480859.947868-CDS-H-paniculata_contig18555:151..202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 152..202 -
1622929435.0877311-CDS-H-paniculata_contig18555:769..8651622929435.0877311-CDS-H-paniculata_contig18555:769..865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 770..865 -
1691480859.962691-CDS-H-paniculata_contig18555:769..8651691480859.962691-CDS-H-paniculata_contig18555:769..865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 770..865 -
1622929435.1118026-CDS-H-paniculata_contig18555:2672..27621622929435.1118026-CDS-H-paniculata_contig18555:2672..2762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 2673..2762 -
1691480859.9740384-CDS-H-paniculata_contig18555:2672..27621691480859.9740384-CDS-H-paniculata_contig18555:2672..2762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 2673..2762 -
1622929435.1256943-CDS-H-paniculata_contig18555:3020..31431622929435.1256943-CDS-H-paniculata_contig18555:3020..3143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 3021..3143 -
1691480859.9824195-CDS-H-paniculata_contig18555:3020..31431691480859.9824195-CDS-H-paniculata_contig18555:3020..3143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18555 3021..3143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18555.4575.1

>prot_H-paniculata_contig18555.4575.1 ID=prot_H-paniculata_contig18555.4575.1|Name=mRNA_H-paniculata_contig18555.4575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
QAALVSLALYVLQHPETLGETIVLGKKLVQSILDDPDTVQQVTDMSLKVM
SDARFQKGAADLVVAVGQSDEVYGAVTELASRVIQDPKVRETLSAMLSAS
SHKVLEDQEVLDHSKEFVAQ
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mRNA from alignment at H-paniculata_contig18555:152..3143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18555.4575.1 ID=mRNA_H-paniculata_contig18555.4575.1|Name=mRNA_H-paniculata_contig18555.4575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2992bp|location=Sequence derived from alignment at H-paniculata_contig18555:152..3143- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCTGCGCTGGTGAGCTTGGCGTTGTATGTTCTGCAACATCCAGAGAC
GCTTGGCGAGACCATCGTGCTGGGCAAGAAACTCGTCCAATCTATACTGG
ACGATCCAGATACAGTGCAGCAGGTATCTAAGAAGAGCGCATATATATAT
ATATATTAGTATATATATAAACCACAACTATAGGGCGACAGGGCCTCCTC
CTTCCTCGATAGTAAATATAGTGTTCGACTCTCGCGACACATTTTTGTAT
TTTTAGTGCATGAAGAACTTGTTGTTGTCATATATGATTCATCATTATTA
TCACCAGTATTGTATTTATTTATTTTTTAACATGAAAGTTAATTTTCCCT
GTTGCTGTTCATATCGTATTTGACTTTGAAGGTGACCGACATGTCTCTGA
AGGTCATGTCAGATGCACGCTTCCAGAAGGGAGCGGCTGACCTTGTCGTG
GCTGTCGGACAAAGCGACGAGGTGAGCACATAGTACACGTGAGGTACTCT
CTCGCTGGCGTAGACCAGGAGCCACCAGCTGTTTGTTTCTGTACGAGACA
AAAGTCCAATCGCTCACCCCCGCGGGTCGATGATGAAAATTCCCACCGCG
TATTGCCATAAGCACCTTTTATCTTGTGACCGCGGGTCTGTGTGATCGAG
CTAAAGTGTTCAATAATAATAATGATAGTACCACAGACAACATATCATCG
GCGCATGGGGAGCCTCGTCCCCAACAGTTGAGATTGTGTGCTGCACATGC
CTGCCTTCCTTCTATGTTCTAGTGGTTTGGGTGCGGTCTGCTTTTGGCCG
CCCTTCGGTGTACCCGGGGGCGATTGCTAATGTATACGGTGTGCTGCTCT
CTTCGGACCAAATCGAGGAAACTCGCCGCAGTTGTAGGTTTAGATGTGGG
TGACGGTGTGTGCAGCAACCACCCTCCGGTGATGATATCATCGATTATTT
TTCAAGTCGAACTTTTTCGAGAGTTGCGGCGCTGGGTAAGCTGTTTTCTG
ATGGGTATCGAAGGATCGTCGTCGGAGGACTGTCGGATCTTTACCTCTTG
CGTCGGAAACTTGATTATCGGGGGGGTTTCAACACAAGAGGCATTTTAAC
TATCAAGCGGAAAGAAGAATCCGATCGCCTACAAAATATATAAAAAGGAA
GCTTCCACCGCTCTTGGGTAATGAAAAAAAAAAATTGCCTGGGGTGGTAG
TATTGTCTAAAAGCAGTTCTGTCGATGGGGGGGGGGATTTTTGTCTTGGG
AAATACTTTGCTGTGTGTATGCCCGAAAGGTCATTCGACAATGCTGTGGC
GACGGAACGTCGTCGCGGGTTTGACATTGTGCACGCACATGAAGATATAT
ACAAGGATTTTCCTTCTTGGTTGAGGGATTTATAGCAGTGGAATTTTGAA
CCCTCACGACATGGGACCCTGGACAAAATAAGATGAAATAAACCTGACAG
TCCCGCGACAAAACCGCCGCGGTAAGAGCCGGGTCGAGGGGGATCTAGAA
CAAACGTAAGGAGTATGACTATAGCACCTATCTCACCCCCCCGACCCCTC
TACCTTCGCGGAGGCGTCGAGTGCATGTTAAAAAATTCGGGTAGGGCATC
ATTTCTAGAGAAGGATTGCGAAAGGATTATTACACCTGGTCCGGTGCCGT
GCCATCGGGGTTAATTGTGTTTTGCTGCAAGTTGGGCATAGTGCTTGCTT
CCTTTGGGTACTAGCGTCACCCAACAGCTGGTAAAGTGTGTTGCAAAGCA
CGCAACGGGTTGGTACATGACCAACAAATCATTCATTATGCATGGCGTTT
AGCGTCGATTAATACGCTTTGGTCGTGTCAGATCTTGTCTATTTTGTCCC
CCCAAGCGGGTTTGGTTCGGCTGTGAGTAATCGATTTGGTTCGGCTGTGG
ACGTGTGTTTTCGCTCTGTCGGAAACACTGCTATCGGTTAGGGGCCCTTG
GCTCGATTCAGTTCAAACGGCTGATGATTCGGACCGGGGCGGAGAAGCAA
GTGCGATGCGGATGAGTGACGAATCATATGAAAAATGAAAAAACAAAATA
AAATGAAGAGCAAATAACTACTTGAGGCCTGCCTTGCAGAGGTATTTTAG
AAGAATAGAAGCAAAGAAGGGTCTTCCATTTACAAATCCATGCCCTTTTT
TTGGGGGGGGAGGGGGGTCTAGTAACACCCTATCAACAAAAAAAGAACTC
ACTCACACGAAAAAGAAGAGAGTTCATCAAGGAAGGGAAAGCAGAATTTG
CTTCTTAAAATGCCTTGTCTATCTTCAGGTGTATGGCGCTGTGACGGAAT
TGGCGTCCAGGGTTATTCAGGACCCGAAAGTTCGTGAGACGCTGAGCGCT
ATGCTGTCTGCTTCTTCACACAAGGTACGGGATAAGAGATAGATATGTGC
ATGGCGCAATTGACGACTGAGATGAACGCGTATGATGTCGAGTCAGATCT
TGATGCTTCACACCTGCCTTGTGAAGGTCATCATCTAGTTGCTAGATCAA
GGCGAGTGAAGGCCGGGCACCACGTCCCTAGTAGGATTTTTTTTTTTTTT
TTTAATACACATCGACAAGAGGCAGCACCAAAAATCGAGTATTTCTGAGC
AAAGCACCAAATTTTTGCGATTCGTGTTGAACTGTCACATATTTGCATAG
CTTTTGCTCCTTCCCCCAGGATCTCGTTTTACTCCTGGATGACTGATGAC
CTGACCGCTTCGGGAAGGGTAGATAGTAATGTCTAGAAAACGCGATGAGT
TCGGCAGAATTTTGGATCAACCTCACAGCTAGTCAGCAAGCGAGGCACAC
ATGTCATGTTACGGTGTTGCAGCGCTGTACACGTTTTCGATGCTCGAAGT
AGTGTTTTTTCAGTATGAGTGGGGATTGCTCATGGGTGCGTGAGAAAATC
GCTCGTACTGTACGTACCTGTTCCGTTATATTTCTGGTCAGGTGCTGGAG
GATCAGGAGGTATTGGATCACTCAAAGGAGTTTGTAGCACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18555:152..3143-

>mRNA_H-paniculata_contig18555.4575.1 ID=mRNA_H-paniculata_contig18555.4575.1|Name=mRNA_H-paniculata_contig18555.4575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig18555:152..3143- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCTGCGCTGGTGAGCTTGGCGTTGTATGTTCTGCAACATCCAGAGAC
GCTTGGCGAGACCATCGTGCTGGGCAAGAAACTCGTCCAATCTATACTGG
ACGATCCAGATACAGTGCAGCAGCAGGCTGCGCTGGTGAGCTTGGCGTTG
TATGTTCTGCAACATCCAGAGACGCTTGGCGAGACCATCGTGCTGGGCAA
GAAACTCGTCCAATCTATACTGGACGATCCAGATACAGTGCAGCAGGTGA
CCGACATGTCTCTGAAGGTCATGTCAGATGCACGCTTCCAGAAGGGAGCG
GCTGACCTTGTCGTGGCTGTCGGACAAAGCGACGAGGTGACCGACATGTC
TCTGAAGGTCATGTCAGATGCACGCTTCCAGAAGGGAGCGGCTGACCTTG
TCGTGGCTGTCGGACAAAGCGACGAGGTGTATGGCGCTGTGACGGAATTG
GCGTCCAGGGTTATTCAGGACCCGAAAGTTCGTGAGACGCTGAGCGCTAT
GCTGTCTGCTTCTTCACACAAGGTGTATGGCGCTGTGACGGAATTGGCGT
CCAGGGTTATTCAGGACCCGAAAGTTCGTGAGACGCTGAGCGCTATGCTG
TCTGCTTCTTCACACAAGGTGCTGGAGGATCAGGAGGTATTGGATCACTC
AAAGGAGTTTGTAGCACAGGTGCTGGAGGATCAGGAGGTATTGGATCACT
CAAAGGAGTTTGTAGCACAG
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