mRNA_H-paniculata_contig1853.4569.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1853.4569.1
Unique NamemRNA_H-paniculata_contig1853.4569.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1853.4569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1853contigH-paniculata_contig1853:15407..16938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_011360.1
Exons2
Model size199
Hectar predicted targeting categoryother localisation
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929434.2773008-CDS-H-paniculata_contig1853:15406..155671622929434.2773008-CDS-H-paniculata_contig1853:15406..15567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1853 15407..15567 +
1691480859.6844332-CDS-H-paniculata_contig1853:15406..155671691480859.6844332-CDS-H-paniculata_contig1853:15406..15567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1853 15407..15567 +
1622929434.2970886-CDS-H-paniculata_contig1853:16902..169361622929434.2970886-CDS-H-paniculata_contig1853:16902..16936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1853 16903..16936 +
1691480859.7003376-CDS-H-paniculata_contig1853:16902..169361691480859.7003376-CDS-H-paniculata_contig1853:16902..16936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1853 16903..16936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1853.4569.1prot_H-paniculata_contig1853.4569.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1853 15407..16936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1853.4569.1

>prot_H-paniculata_contig1853.4569.1 ID=prot_H-paniculata_contig1853.4569.1|Name=mRNA_H-paniculata_contig1853.4569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
STPAVRPKATVRELAHTLDPRLFAFKPGDSCDIEGCGVWSEDHVHRAPGC
DCEIDSEVYLLRSEY
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mRNA from alignment at H-paniculata_contig1853:15407..16938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1853.4569.1 ID=mRNA_H-paniculata_contig1853.4569.1|Name=mRNA_H-paniculata_contig1853.4569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1532bp|location=Sequence derived from alignment at H-paniculata_contig1853:15407..16938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACCCCCGCGGTCAGGCCGAAAGCTACCGTGCGGGAGCTGGCGCACAC
CCTCGATCCTCGCCTTTTTGCCTTCAAACCCGGTGATTCATGCGACATTG
AAGGGTGCGGGGTTTGGAGTGAAGATCATGTGCACCGGGCGCCTGGTTGC
GACTGTGAAATGTGAGCAAACGACGGACAGTTGATATGACGAGGGGTGGC
AACCACGAGGCACAACGGGGGGGGGTACTCATGTTTTGCATGCCACAGTT
ATTAGACTTGATGTTCATGATTTGACCATTGATCATGCGTGAGAATATGG
CTCAAAACATGTACGAACACATGTGGAGAACGTTGTCCATAACCATCGAT
CAAAATTGGAGGTATGATGCTCACTCGTGTTTAGTTCTTCTGAGTGACTG
ATTGGTTGATTCCTCAAGCCGATCATATTCGGGAAGCTATTCGTGCGTTA
TGACCGCGCCCCTACCCCCCCCCCCCCCGGCCTCTATCGTTTCACGACGC
TGCAAGCATTCAAGCATTTGCGGATCCACTGCCGAAGGACGTAAAATGCG
CTAATTTCTGCTGAGACGGGGAGGGGGGCGTAAATGATCATGTTATGTTT
TACATGTCTCAGCAAAAAAGTAATTCGTTGCCTGTGTGAACTCGAGATGA
CGGAATATCGTTCCCATAAGTAGGCCTATTTCCCTCCAGCAACTAGCAAC
AATCCGCGGTTAATATATTTCTTCTCGCATATTTTGACTTGTATATATTC
TGCGTTGCGTAGTTTTCGCATTAGAGGATGACTACCGTAGAGTACACAAA
TTTCGAATGCTACGAAGTAGTTTGCACCGCGAAGTTTCCATAGCATATAG
TTCGCCGTTTTACCATACCAAATGGACCATATATTTACATGTTTACTACT
TGGCAAATGCCAGGTACAGTCAGCCTTCATGTTTTTCAATGAATCACTCT
CTTGAAAAAGAGAGACCTATCTACTTACTCGTAAAAAGGGTTTGTCAACG
GCCGATCGTTCCTTTCTACCTTGCCACGGAGGGGTTCTGCGCATTCTGAC
GCACCAGTCACACGGCAGAATAAATGGTCGTCGTCGGGTAGTGCATGGAG
TGGAGAGACCTTCAACTCCCATCGCGTCCGCATACGTATCTTCTCTCCCG
TACATCCGGATATATTTCCTTGTGTCGATTAGCACTTGCATCCTGCTAAG
CACTAAACTCACTTTCATGTTTCCCTCATCGGGGCCAGGATGTTTTTATT
GTGTTTGTTTTCTTATTGTTAGTTCTACATAAAAAAACAACAAATTAGGT
GAGCGGAAAATTATACAACTTTGTCTACTATATACAAGTCGGAGATTATT
GAGTTGGTATGAAACCATTCTTTACACTCCAATGAGATAGCTTTCGGGTT
GGTTCAACAGGCGTTTACACTCGTTGTAAATTTATCGTTTTCTTTCTTCT
TCTCCTCCGCGGCGGTGATGCGTTCGTGTCAATTTTGGTCCTTCAGAGAC
AGCGAGGTTTACCTCCTTCGGAGCGAATACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1853:15407..16938+

>mRNA_H-paniculata_contig1853.4569.1 ID=mRNA_H-paniculata_contig1853.4569.1|Name=mRNA_H-paniculata_contig1853.4569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig1853:15407..16938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACCCCCGCGGTCAGGCCGAAAGCTACCGTGCGGGAGCTGGCGCACAC
CCTCGATCCTCGCCTTTTTGCCTTCAAACCCGGTGATTCATGCGACATTG
AAGGGTGCGGGGTTTGGAGTGAAGATCATGTGCACCGGGCGCCTGGTTGC
GACTGTGAAATAGCACCCCCGCGGTCAGGCCGAAAGCTACCGTGCGGGAG
CTGGCGCACACCCTCGATCCTCGCCTTTTTGCCTTCAAACCCGGTGATTC
ATGCGACATTGAAGGGTGCGGGGTTTGGAGTGAAGATCATGTGCACCGGG
CGCCTGGTTGCGACTGTGAAATAGACAGCGAGGTTTACCTCCTTCGGAGC
GAATACAGACAGCGAGGTTTACCTCCTTCGGAGCGAATAC
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