prot_H-paniculata_contig18526.4567.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18526.4567.1
Unique Nameprot_H-paniculata_contig18526.4567.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length211
Homology
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BLAST of mRNA_H-paniculata_contig18526.4567.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.310e-14
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:    1 LIIRLLAQQQLFSAFMEPVDLVAYPSYGVMIKRPMDLQTMYYRVEAGVFGGI 52
            LIIRLLAQQQLF AF+EPVDLVA P YG +IKRPMDLQ+MYY+V+ G FGG+
Sbjct:  249 LIIRLLAQQQLFLAFLEPVDLVALPLYGALIKRPMDLQSMYYKVQFGSFGGL 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18526.4567.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8B2_9PHAE1.310e-1476.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 6..50
e-value: 3.0E-6
score: 27.2
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 7..49
score: 9.725
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 1..53
e-value: 2.3E-9
score: 38.9
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18526contigH-paniculata_contig18526:2018..4067 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18526.4567.1mRNA_H-paniculata_contig18526.4567.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18526 2018..4067 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18526.4567.1 ID=prot_H-paniculata_contig18526.4567.1|Name=mRNA_H-paniculata_contig18526.4567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
LIIRLLAQQQLFSAFMEPVDLVAYPSYGVMIKRPMDLQTMYYRVEAGVFG
GIRARPRPAPAPTAPVAPALAYSSAPAPASSPTTLAVQPAVGSVAAGLPG
SMVISPGAVGGYGGDYGGSARFGGATLVRTEDMVVGGGSGVANGAVANGN
VVRDSGGVGGAFGNGAHVGSPVGFGAAPAVVGQWQGVDSAGQQPQPQHVQ
RNFGGGGGNGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf