mRNA_H-paniculata_contig18526.4567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18526.4567.1
Unique NamemRNA_H-paniculata_contig18526.4567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig18526.4567.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.310e-14
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 LIIRLLAQQQLFSAFMEPVDLVAYPSYGVMIKRPMDLQTMYYRVEAGVFGGI 156
            LIIRLLAQQQLF AF+EPVDLVA P YG +IKRPMDLQ+MYY+V+ G FGG+
Sbjct:  249 LIIRLLAQQQLFLAFLEPVDLVALPLYGALIKRPMDLQSMYYKVQFGSFGGL 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18526.4567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8B2_9PHAE1.310e-1476.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18526contigH-paniculata_contig18526:2018..4067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size634
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18526.4567.1prot_H-paniculata_contig18526.4567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18526 2018..4067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929434.1369839-CDS-H-paniculata_contig18526:2017..20851622929434.1369839-CDS-H-paniculata_contig18526:2017..2085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18526 2018..2085 +
1691480859.6446295-CDS-H-paniculata_contig18526:2017..20851691480859.6446295-CDS-H-paniculata_contig18526:2017..2085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18526 2018..2085 +
1622929434.156227-CDS-H-paniculata_contig18526:2700..31461622929434.156227-CDS-H-paniculata_contig18526:2700..3146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18526 2701..3146 +
1691480859.6550186-CDS-H-paniculata_contig18526:2700..31461691480859.6550186-CDS-H-paniculata_contig18526:2700..3146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18526 2701..3146 +
1622929434.176032-CDS-H-paniculata_contig18526:3948..40671622929434.176032-CDS-H-paniculata_contig18526:3948..4067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18526 3949..4067 +
1691480859.6645317-CDS-H-paniculata_contig18526:3948..40671691480859.6645317-CDS-H-paniculata_contig18526:3948..4067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18526 3949..4067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18526.4567.1

>prot_H-paniculata_contig18526.4567.1 ID=prot_H-paniculata_contig18526.4567.1|Name=mRNA_H-paniculata_contig18526.4567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
LIIRLLAQQQLFSAFMEPVDLVAYPSYGVMIKRPMDLQTMYYRVEAGVFG
GIRARPRPAPAPTAPVAPALAYSSAPAPASSPTTLAVQPAVGSVAAGLPG
SMVISPGAVGGYGGDYGGSARFGGATLVRTEDMVVGGGSGVANGAVANGN
VVRDSGGVGGAFGNGAHVGSPVGFGAAPAVVGQWQGVDSAGQQPQPQHVQ
RNFGGGGGNGG
back to top

mRNA from alignment at H-paniculata_contig18526:2018..4067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18526.4567.1 ID=mRNA_H-paniculata_contig18526.4567.1|Name=mRNA_H-paniculata_contig18526.4567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2050bp|location=Sequence derived from alignment at H-paniculata_contig18526:2018..4067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATCATTCGTCTGCTCGCCCAGCAGCAGCTGTTCTCGGCGTTCATGGA
GCCCGTTGATCTGGTCGCGTGAGTATGTACTCTGTAGCCGTACAAACAGT
TCTCAACATTCCAGATTTGCGCTTTCAAGAACCGTGTCGCGAAACAAGGA
AGCTCGTGGTACGACACAGAAAGAGGTGCCTCGGTTGCCAGCTAACTCCC
CTCCCTTGCCCTCCCCTCACACGTTGTCTTGTTCTTTGAAATCTGCAAGT
GGACTTTTGTCTACGATGTTTTGGGCTGGTGCGTGCGGAAGAAAGTATCC
AGCCCACTGCGCGTTCGGTATATCTTATTGTTTACAAGGGACATCGTGAC
GTACCCCGCCCCCCCCATGGCTTTTGGCTATCAAATGTGGATCAAGCGCT
TTCGTTCCTCCTCACAAGAAGACATCGACGTTACGCGGAATCTAAATATT
TCAACGACCATTAAGTGTGGCATTTTTGCTTTTTGGTTGTTTTCATGATA
TCGTATGTATGGGTTTTACTCACCTAAAAGTTTGCTCATGACGATGTACA
TTTAGCCGTAATTCTTTACCGTATAACCTAAAATATACTTTCCGAATTTT
TCATAGGACGAGATTAGTCGGATATCAGTAAACGGGTGGAGCGGTCAGTA
ACCCCCCTCTTCCCCCCCCATCCCTGATACCAGATATCCCTCGTATGGCG
TGATGATCAAGCGTCCCATGGACTTGCAGACAATGTACTATAGGGTGGAA
GCGGGAGTATTCGGAGGCATCCGCGCGCGGCCGCGTCCCGCCCCCGCGCC
GACAGCTCCCGTCGCCCCCGCCCTGGCGTATTCCTCTGCTCCGGCTCCCG
CCTCTTCCCCTACAACCCTGGCGGTCCAGCCTGCGGTCGGCTCTGTAGCA
GCGGGGTTGCCGGGGTCTATGGTGATCTCGCCGGGTGCCGTTGGTGGCTA
CGGTGGTGATTATGGTGGTAGTGCTCGTTTCGGTGGGGCGACGCTAGTCC
GGACGGAGGACATGGTTGTCGGGGGGGGGAGTGGTGTCGCAAACGGCGCG
GTTGCTAACGGGAATGTTGTGAGGGACAGCGGTGGGGTCGGTGGTGCGTT
CGGTAACGGCGCTCACGTCGGCAGTCCGGGTGAGTGAGAGGAGGAGGCTG
GGGTGTGACTCAAGAGTAGGGAGTGTTGTTGATATTGGGGGGGCAGGGGG
GCGAGGGGGTACTCATGTTTGGCATGCCGTAGTTTTCGGACCGTTTACCA
GACGTTCTCGATGGACAGAGCTTTGCTCCTCTTGGGTGAGGGGCGTCAGC
ATCTTGATACCAAGCATCTTGAAGTAGCCAGATTTGTTATCCACAAACTA
ACCAAACTCGTGGAGGGTGAATCCGTTGTACCCATGTTGGGGTTACGCAG
GTGACTTCAATAAGCAGATGCATACCCTTGTCAACAAAAGTAAAATCAAT
GGGGAGGAGAGGGGAAGCGGCATGTTCATTGAATAGGCACTCAATGGGTT
ACCACCTTCACAAGGAAGATCACTGTATCACTCGCATGTGTACTGTGCGT
AGACAGGATATGAACTGTAAGCGAACACCTGACAGAAGTAATTAACCTTA
TGCATCCACCAAGCCTCATTCACAAGTCAACCTACTTTGACACTTGCCAC
AGGTAATAGCTCTATAAACCTAGTACAATTTTTTTTTGTCGTATCCATGT
TAAGGTCGTGCAGCCGAGTTGAAATTTTCTTTCTGAAAGTTCTTGTTCAT
GTACATTCAGGGATACCGCAGGCGTGTTCACGAATTGAAGAACCGCTGAC
GGTGTCGTCGTGATGGGACAGCATTTTCGTTTCTCCATTTCGACGGCGTA
ACCTTACTTCCGCATCCTCTCTTGTACACACTGGTTTCCCTTTATTCCTT
CCTCCCTCCCACATTCTGTTATTATCCATAGTGGGCTTCGGTGCCGCGCC
GGCTGTTGTAGGCCAATGGCAAGGAGTAGACTCTGCGGGGCAACAGCCAC
AGCCACAGCATGTACAACGTAACTTCGGCGGTGGCGGCGGTAACGGCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18526:2018..4067+

>mRNA_H-paniculata_contig18526.4567.1 ID=mRNA_H-paniculata_contig18526.4567.1|Name=mRNA_H-paniculata_contig18526.4567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig18526:2018..4067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATCATTCGTCTGCTCGCCCAGCAGCAGCTGTTCTCGGCGTTCATGGA
GCCCGTTGATCTGGTCGCCTGATCATTCGTCTGCTCGCCCAGCAGCAGCT
GTTCTCGGCGTTCATGGAGCCCGTTGATCTGGTCGCATATCCCTCGTATG
GCGTGATGATCAAGCGTCCCATGGACTTGCAGACAATGTACTATAGGGTG
GAAGCGGGAGTATTCGGAGGCATCCGCGCGCGGCCGCGTCCCGCCCCCGC
GCCGACAGCTCCCGTCGCCCCCGCCCTGGCGTATTCCTCTGCTCCGGCTC
CCGCCTCTTCCCCTACAACCCTGGCGGTCCAGCCTGCGGTCGGCTCTGTA
GCAGCGGGGTTGCCGGGGTCTATGGTGATCTCGCCGGGTGCCGTTGGTGG
CTACGGTGGTGATTATGGTGGTAGTGCTCGTTTCGGTGGGGCGACGCTAG
TCCGGACGGAGGACATGGTTGTCGGGGGGGGGAGTGGTGTCGCAAACGGC
GCGGTTGCTAACGGGAATGTTGTGAGGGACAGCGGTGGGGTCGGTGGTGC
GTTCGGTAACGGCGCTCACGTCGGCAGTCCGGATATCCCTCGTATGGCGT
GATGATCAAGCGTCCCATGGACTTGCAGACAATGTACTATAGGGTGGAAG
CGGGAGTATTCGGAGGCATCCGCGCGCGGCCGCGTCCCGCCCCCGCGCCG
ACAGCTCCCGTCGCCCCCGCCCTGGCGTATTCCTCTGCTCCGGCTCCCGC
CTCTTCCCCTACAACCCTGGCGGTCCAGCCTGCGGTCGGCTCTGTAGCAG
CGGGGTTGCCGGGGTCTATGGTGATCTCGCCGGGTGCCGTTGGTGGCTAC
GGTGGTGATTATGGTGGTAGTGCTCGTTTCGGTGGGGCGACGCTAGTCCG
GACGGAGGACATGGTTGTCGGGGGGGGGAGTGGTGTCGCAAACGGCGCGG
TTGCTAACGGGAATGTTGTGAGGGACAGCGGTGGGGTCGGTGGTGCGTTC
GGTAACGGCGCTCACGTCGGCAGTCCGGTGGGCTTCGGTGCCGCGCCGGC
TGTTGTAGGCCAATGGCAAGGAGTAGACTCTGCGGGGCAACAGCCACAGC
CACAGCATGTACAACGTAACTTCGGCGGTGGCGGCGGTAACGGCGGGTGG
GCTTCGGTGCCGCGCCGGCTGTTGTAGGCCAATGGCAAGGAGTAGACTCT
GCGGGGCAACAGCCACAGCCACAGCATGTACAACGTAACTTCGGCGGTGG
CGGCGGTAACGGCGGG
back to top